Experiment set1S733 for Pantoea agglomerans CFBP13505 P0401

Compare to:

D-Fructose carbon source

200 most important genes:

  gene name fitness t score description  
PagCFBP13505_RS01195 -6.6 -6.4 imidazole glycerol phosphate synthase subunit HisH compare
PagCFBP13505_RS01190 -6.6 -4.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PagCFBP13505_RS15165 -6.4 -6.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
PagCFBP13505_RS01210 -6.3 -7.5 histidinol dehydrogenase compare
PagCFBP13505_RS21750 -6.2 -10.3 phosphoserine phosphatase compare
PagCFBP13505_RS07020 -6.0 -4.2 tryptophan synthase subunit alpha compare
PagCFBP13505_RS21895 -5.9 -11.4 homoserine kinase compare
PagCFBP13505_RS12985 -5.8 -6.9 3-isopropylmalate dehydratase small subunit compare
PagCFBP13505_RS06995 -5.8 -10.4 anthranilate synthase component 1 compare
PagCFBP13505_RS01185 -5.8 -12.9 imidazole glycerol phosphate synthase subunit HisF compare
PagCFBP13505_RS16990 -5.7 -16.4 amino-acid N-acetyltransferase compare
PagCFBP13505_RS18430 -5.7 -13.4 acetylglutamate kinase compare
PagCFBP13505_RS20935 -5.7 -15.5 branched-chain amino acid transaminase compare
PagCFBP13505_RS20915 -5.6 -20.1 ketol-acid reductoisomerase compare
PagCFBP13505_RS01200 -5.6 -6.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
PagCFBP13505_RS20930 -5.5 -15.1 dihydroxy-acid dehydratase compare
PagCFBP13505_RS07015 -5.5 -15.5 tryptophan synthase subunit beta compare
PagCFBP13505_RS21890 -5.5 -17.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
PagCFBP13505_RS04465 -5.4 -11.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
PagCFBP13505_RS07005 -5.4 -8.7 anthranilate phosphoribosyltransferase compare
PagCFBP13505_RS21900 -5.4 -9.7 threonine synthase compare
PagCFBP13505_RS03405 -5.3 -20.1 asparagine synthase B compare
PagCFBP13505_RS22580 -5.3 -12.0 phosphoribosylamine--glycine ligase compare
PagCFBP13505_RS15975 -5.3 -8.8 phosphoglycerate dehydrogenase compare
PagCFBP13505_RS00230 -5.3 -20.0 amidophosphoribosyltransferase compare
PagCFBP13505_RS11290 -5.3 -3.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PagCFBP13505_RS12990 -5.3 -13.5 3-isopropylmalate dehydratase large subunit compare
PagCFBP13505_RS18420 -5.2 -16.0 argininosuccinate lyase compare
PagCFBP13505_RS22330 -5.1 -16.6 homoserine O-succinyltransferase compare
PagCFBP13505_RS18460 -5.1 -19.4 cystathionine gamma-synthase compare
PagCFBP13505_RS18425 -5.0 -14.8 argininosuccinate synthase compare
PagCFBP13505_RS17110 -5.0 -20.4 diaminopimelate decarboxylase compare
PagCFBP13505_RS15070 -5.0 -14.0 phosphoribosylformylglycinamidine cyclo-ligase compare
PagCFBP13505_RS12995 -5.0 -13.2 3-isopropylmalate dehydrogenase compare
PagCFBP13505_RS14820 -5.0 -17.2 phosphoribosylformylglycinamidine synthase compare
PagCFBP13505_RS07010 -5.0 -5.9 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
PagCFBP13505_RS00750 -5.0 -8.4 1-phosphofructokinase compare
PagCFBP13505_RS18435 -4.9 -13.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
PagCFBP13505_RS05115 -4.9 -4.8 dihydroorotase compare
PagCFBP13505_RS16805 -4.9 -11.4 phosphoadenylyl-sulfate reductase compare
PagCFBP13505_RS20925 -4.8 -13.5 threonine ammonia-lyase, biosynthetic compare
PagCFBP13505_RS01205 -4.8 -14.4 histidinol-phosphate transaminase compare
PagCFBP13505_RS09390 -4.7 -20.0 sulfite reductase subunit alpha compare
PagCFBP13505_RS16810 -4.7 -16.4 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
PagCFBP13505_RS16775 -4.7 -10.4 adenylyl-sulfate kinase compare
PagCFBP13505_RS22575 -4.6 -12.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
PagCFBP13505_RS08965 -4.6 -8.1 2-iminobutanoate/2-iminopropanoate deaminase compare
PagCFBP13505_RS04625 -4.6 -4.5 quinone-dependent dihydroorotate dehydrogenase compare
PagCFBP13505_RS01180 -4.6 -8.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
PagCFBP13505_RS09385 -4.6 -27.0 hypothetical protein compare
PagCFBP13505_RS18440 -4.5 -14.1 acetylornithine deacetylase compare
PagCFBP13505_RS04415 -4.4 -13.2 leucine-responsive transcriptional regulator Lrp compare
PagCFBP13505_RS08950 -4.4 -8.3 ornithine carbamoyltransferase compare
PagCFBP13505_RS13005 -4.4 -2.3 leu operon leader peptide compare
PagCFBP13505_RS05225 -4.4 -4.2 ribonuclease E compare
PagCFBP13505_RS08955 -4.4 -7.2 aspartate carbamoyltransferase compare
PagCFBP13505_RS04685 -4.3 -6.5 porin OmpA compare
PagCFBP13505_RS11210 -4.3 -2.9 adenylosuccinate synthase compare
PagCFBP13505_RS12880 -4.2 -8.5 carbamoyl-phosphate synthase large subunit compare
PagCFBP13505_RS03620 -4.2 -6.4 Tol-Pal system protein TolB compare
PagCFBP13505_RS18445 -4.2 -18.5 phosphoenolpyruvate carboxylase compare
PagCFBP13505_RS06900 -4.2 -4.1 orotidine-5'-phosphate decarboxylase compare
PagCFBP13505_RS12265 -4.2 -4.6 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
PagCFBP13505_RS16815 -4.1 -20.3 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
PagCFBP13505_RS07000 -4.1 -5.7 glutamine amidotransferase compare
PagCFBP13505_RS13365 -4.1 -3.9 RNA polymerase-binding protein DksA compare
PagCFBP13505_RS12875 -4.1 -3.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
PagCFBP13505_RS03560 -4.1 -2.8 2-oxoglutarate dehydrogenase E1 component compare
PagCFBP13505_RS12270 -4.0 -8.8 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
PagCFBP13505_RS13000 -4.0 -11.7 2-isopropylmalate synthase compare
PagCFBP13505_RS19970 -4.0 -10.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
PagCFBP13505_RS15525 -3.9 -5.6 thioredoxin TrxA compare
PagCFBP13505_RS10205 -3.9 -5.5 pyrroline-5-carboxylate reductase compare
PagCFBP13505_RS11345 -3.9 -12.1 class 1 fructose-bisphosphatase compare
PagCFBP13505_RS20835 -3.7 -8.4 manganese efflux pump MntP compare
PagCFBP13505_RS10040 -3.7 -7.4 glutamate 5-kinase compare
PagCFBP13505_RS17870 -3.7 -4.3 inorganic phosphate transporter PitA compare
PagCFBP13505_RS01215 -3.5 -6.2 ATP phosphoribosyltransferase compare
PagCFBP13505_RS00755 -3.4 -15.6 PTS fructose transporter subunit IIBC compare
PagCFBP13505_RS18890 -3.3 -16.2 nitrogen regulation protein NR(II) compare
PagCFBP13505_RS00745 -3.3 -8.1 fused PTS fructose transporter subunit IIA/HPr protein compare
PagCFBP13505_RS22280 -3.2 -13.8 glucose-6-phosphate isomerase compare
PagCFBP13505_RS09350 -3.2 -4.2 RNA polymerase factor sigma-54 compare
PagCFBP13505_RS15295 -3.0 -10.5 HTH-type transcriptional regulator MetR compare
PagCFBP13505_RS00090 -2.9 -4.1 phosphohistidine phosphatase SixA compare
PagCFBP13505_RS09130 -2.8 -7.8 ribosome maturation factor RimP compare
PagCFBP13505_RS02850 -2.8 -6.6 formyltetrahydrofolate deformylase compare
PagCFBP13505_RS18745 -2.8 -5.7 orotate phosphoribosyltransferase compare
PagCFBP13505_RS22185 -2.6 -4.1 hypothetical protein compare
PagCFBP13505_RS19035 -2.6 -4.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
PagCFBP13505_RS20010 -2.6 -3.0 bile acid:sodium symporter compare
PagCFBP13505_RS16785 -2.5 -10.4 sulfate adenylyltransferase subunit CysD compare
PagCFBP13505_RS16780 -2.4 -14.7 sulfate adenylyltransferase subunit CysN compare
PagCFBP13505_RS16555 -2.4 -5.7 bifunctional chorismate mutase/prephenate dehydratase compare
PagCFBP13505_RS03535 -2.4 -6.4 citrate synthase compare
PagCFBP13505_RS12805 -2.4 -9.1 DUF1493 family protein compare
PagCFBP13505_RS21885 -2.3 -4.0 thr operon leader peptide compare
PagCFBP13505_RS17350 -2.3 -2.8 tetratricopeptide repeat-containing protein compare
PagCFBP13505_RS00345 -2.3 -6.3 NADH-quinone oxidoreductase subunit C/D compare
PagCFBP13505_RS19985 -2.3 -11.2 cysteine synthase A compare
PagCFBP13505_RS18895 -2.2 -9.5 nitrogen regulation protein NR(I) compare
PagCFBP13505_RS16790 -2.2 -7.0 uroporphyrinogen-III C-methyltransferase compare
PagCFBP13505_RS12900 -2.1 -4.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
PagCFBP13505_RS03625 -2.1 -3.0 peptidoglycan-associated lipoprotein Pal compare
PagCFBP13505_RS15215 -2.0 -3.4 NAD(P)H-flavin reductase compare
PagCFBP13505_RS02060 -1.9 -8.2 flagella biosynthesis regulatory protein FliZ compare
PagCFBP13505_RS08330 -1.9 -2.3 helix-turn-helix domain-containing protein compare
PagCFBP13505_RS16670 -1.9 -6.2 recombinase RecA compare
PagCFBP13505_RS19980 -1.9 -2.2 hypothetical protein compare
PagCFBP13505_RS15880 -1.9 -1.7 site-specific tyrosine recombinase XerD compare
PagCFBP13505_RS02535 -1.9 -7.0 carboxy terminal-processing peptidase compare
PagCFBP13505_RS03555 -1.8 -4.0 succinate dehydrogenase iron-sulfur subunit compare
PagCFBP13505_RS14350 -1.8 -7.7 DUF1852 domain-containing protein compare
PagCFBP13505_RS05610 -1.8 -4.2 pyridoxamine 5'-phosphate oxidase compare
PagCFBP13505_RS02880 -1.6 -2.4 NAD-dependent epimerase compare
PagCFBP13505_RS04125 -1.6 -4.5 DNA starvation/stationary phase protection protein Dps compare
PagCFBP13505_RS14600 -1.6 -7.3 magnesium-translocating P-type ATPase compare
PagCFBP13505_RS21625 -1.6 -10.4 aspartate aminotransferase family protein compare
PagCFBP13505_RS14345 -1.6 -5.6 methionine synthase compare
PagCFBP13505_RS12915 -1.6 -6.6 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
PagCFBP13505_RS00780 -1.6 -6.3 LysR family transcriptional regulator compare
PagCFBP13505_RS00385 -1.5 -5.6 NADH-quinone oxidoreductase subunit L compare
PagCFBP13505_RS16735 -1.5 -7.3 murein hydrolase activator NlpD compare
PagCFBP13505_RS03540 -1.5 -3.5 succinate dehydrogenase cytochrome b556 subunit compare
PagCFBP13505_RS00190 -1.5 -6.4 4-phosphoerythronate dehydrogenase PdxB compare
PagCFBP13505_RS15495 -1.5 -6.1 dTDP-glucose 4,6-dehydratase compare
PagCFBP13505_RS06815 -1.5 -1.5 peptide ABC transporter ATP-binding protein SapF compare
PagCFBP13505_RS00390 -1.4 -3.6 NADH-quinone oxidoreductase subunit M compare
PagCFBP13505_RS05660 -1.3 -3.5 electron transport complex subunit E compare
PagCFBP13505_RS01350 -1.3 -3.2 helix-turn-helix transcriptional regulator compare
PagCFBP13505_RS21980 -1.3 -2.9 single-stranded DNA-binding protein compare
PagCFBP13505_RS00370 -1.3 -3.7 NADH-quinone oxidoreductase subunit NuoI compare
PagCFBP13505_RS20855 -1.3 -10.0 malate dehydrogenase (quinone) compare
PagCFBP13505_RS01145 -1.3 -3.2 NAD-dependent epimerase/dehydratase family protein compare
PagCFBP13505_RS03545 -1.2 -3.0 succinate dehydrogenase membrane anchor subunit compare
PagCFBP13505_RS00335 -1.2 -2.2 NADH-quinone oxidoreductase subunit A compare
PagCFBP13505_RS18835 -1.2 -2.9 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
PagCFBP13505_RS19560 -1.2 -2.0 muramoyltetrapeptide carboxypeptidase compare
PagCFBP13505_RS03550 -1.2 -4.6 succinate dehydrogenase flavoprotein subunit compare
PagCFBP13505_RS00200 -1.2 -2.6 tRNA pseudouridine(38-40) synthase TruA compare
PagCFBP13505_RS18690 -1.2 -3.5 glycosyltransferase family 4 protein compare
PagCFBP13505_RS00395 -1.2 -3.8 NADH-quinone oxidoreductase subunit NuoN compare
PagCFBP13505_RS00360 -1.1 -3.7 NADH-quinone oxidoreductase subunit NuoG compare
PagCFBP13505_RS04565 -1.1 -5.9 aspartate/tyrosine/aromatic aminotransferase compare
PagCFBP13505_RS15385 -1.1 -2.5 DUF484 domain-containing protein compare
PagCFBP13505_RS13015 -1.0 -3.1 acetolactate synthase small subunit compare
PagCFBP13505_RS04385 -1.0 -6.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PagCFBP13505_RS00355 -1.0 -3.3 NADH-quinone oxidoreductase subunit NuoF compare
PagCFBP13505_RS09415 -1.0 -6.0 cell division protein ZapE compare
PagCFBP13505_RS12905 -1.0 -3.6 Co2+/Mg2+ efflux protein ApaG compare
PagCFBP13505_RS02690 -1.0 -3.8 septum site-determining protein MinC compare
PagCFBP13505_RS14785 -1.0 -1.2 pyridoxine 5'-phosphate synthase compare
PagCFBP13505_RS02435 -1.0 -1.1 hypothetical protein compare
PagCFBP13505_RS00225 -1.0 -4.6 colicin V production protein compare
PagCFBP13505_RS18920 -1.0 -4.7 DNA polymerase I compare
PagCFBP13505_RS15895 -1.0 -3.0 FAD assembly factor SdhE compare
PagCFBP13505_RS03605 -1.0 -5.3 Tol-Pal system protein TolQ compare
PagCFBP13505_RS00340 -1.0 -3.1 NADH-quinone oxidoreductase subunit B compare
PagCFBP13505_RS11025 -1.0 -6.0 RNase E specificity factor CsrD compare
PagCFBP13505_RS18465 -1.0 -2.8 met regulon transcriptional regulator MetJ compare
PagCFBP13505_RS13465 -0.9 -3.4 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
PagCFBP13505_RS20920 -0.9 -1.9 HTH-type transcriptional activator IlvY compare
PagCFBP13505_RS08910 -0.9 -4.3 leucyl aminopeptidase compare
PagCFBP13505_RS15190 -0.9 -2.8 Trk system potassium transporter TrkH compare
PagCFBP13505_RS10085 -0.9 -2.0 cold-shock protein compare
PagCFBP13505_RS11990 -0.9 -3.0 hypothetical protein compare
PagCFBP13505_RS16740 -0.9 -4.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
PagCFBP13505_RS03755 -0.9 -4.8 6-phosphogluconolactonase compare
PagCFBP13505_RS16100 -0.9 -2.5 YggS family pyridoxal phosphate-dependent enzyme compare
PagCFBP13505_RS09100 -0.9 -5.9 polyribonucleotide nucleotidyltransferase compare
PagCFBP13505_RS15535 -0.9 -3.6 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
PagCFBP13505_RS00330 -0.9 -4.3 transcriptional regulator LrhA compare
PagCFBP13505_RS11995 -0.9 -1.1 hypothetical protein compare
PagCFBP13505_RS12585 -0.9 -1.0 type II toxin-antitoxin system HicB family antitoxin compare
PagCFBP13505_RS10995 -0.9 -2.1 DUF997 family protein compare
PagCFBP13505_RS17755 -0.9 -2.1 tRNA-Val compare
PagCFBP13505_RS19505 -0.9 -1.9 DUF1493 family protein compare
PagCFBP13505_RS13025 -0.9 -1.9 division/cell wall cluster transcriptional repressor MraZ compare
PagCFBP13505_RS05935 -0.9 -2.0 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
PagCFBP13505_RS04410 -0.9 -3.0 thioredoxin-disulfide reductase compare
PagCFBP13505_RS18830 -0.8 -1.1 DNA-directed RNA polymerase subunit omega compare
PagCFBP13505_RS19495 -0.8 -2.5 hypothetical protein compare
PagCFBP13505_RS18845 -0.8 -3.8 ATP-dependent DNA helicase RecG compare
PagCFBP13505_RS13355 -0.8 -4.0 polynucleotide adenylyltransferase PcnB compare
PagCFBP13505_RS19455 -0.8 -2.3 two-component system response regulator PhoP compare
PagCFBP13505_RS19850 -0.8 -1.6 ArsC family reductase compare
PagCFBP13505_RS15065 -0.8 -4.6 phosphoribosylglycinamide formyltransferase compare
PagCFBP13505_RS06575 -0.8 -3.6 fumarate/nitrate reduction transcriptional regulator Fnr compare
PagCFBP13505_RS11280 -0.8 -2.5 peptidyl-prolyl cis-trans isomerase compare
PagCFBP13505_RS05280 -0.8 -2.4 aminodeoxychorismate lyase compare
PagCFBP13505_RS10500 -0.8 -3.6 cytochrome o ubiquinol oxidase subunit IV compare
PagCFBP13505_RS17090 -0.8 -1.8 PTS sugar transporter subunit IIB compare
PagCFBP13505_RS03290 -0.7 -2.7 ribosome silencing factor compare
PagCFBP13505_RS13370 -0.7 -2.6 hypothetical protein compare
PagCFBP13505_RS04170 -0.7 -2.0 DNA-binding protein compare
PagCFBP13505_RS02530 -0.7 -3.5 RNA chaperone ProQ compare
PagCFBP13505_RS14735 -0.7 -5.3 L-aspartate oxidase compare
PagCFBP13505_RS19450 -0.7 -3.9 two-component system sensor histidine kinase PhoQ compare
PagCFBP13505_RS11930 -0.7 -1.7 accessory factor UbiK family protein compare
PagCFBP13505_RS00460 -0.7 -1.8 transcriptional regulator RcsB compare


Specific Phenotypes

None in this experiment

For Pantoea agglomerans CFBP13505 P0401 in carbon source experiments

For carbon source D-Fructose across organisms