Experiment set1S73 for Methylophilus sp. DMC18

Compare to:

Methanol carbon source

200 most important genes:

  gene name fitness t score description  
GFF2602 -4.1 -5.5 Glutamate racemase compare
GFF2313 -3.7 -3.6 hypothetical protein compare
GFF2023 -3.3 -3.9 Sensory histidine kinase/phosphatase NtrB compare
GFF2777 -3.0 -3.6 RNA polymerase sigma-54 factor compare
GFF2024 -2.9 -4.4 DNA-binding transcriptional regulator NtrC compare
GFF1305 -2.9 -2.0 Lon protease compare
GFF2310 -2.7 -4.0 Glycine cleavage system H protein compare
GFF981 -2.6 -2.9 Protein SphX compare
GFF2126 -2.5 -3.3 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
GFF1638 -2.5 -2.4 Putative glucose-6-phosphate 1-epimerase compare
GFF1685 -2.4 -2.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
GFF858 -2.4 -2.8 Thiamine-phosphate synthase compare
GFF2323 -2.3 -3.1 putative cystine transporter YijE compare
GFF2312 -2.2 -3.6 hypothetical protein compare
GFF2175 -2.1 -3.1 hypothetical protein compare
GFF57 -2.1 -3.6 Response regulator UvrY compare
GFF589 -2.1 -3.8 hypothetical protein compare
GFF291 -2.1 -2.4 hypothetical protein compare
GFF580 -2.0 -7.1 dTDP-glucose 4,6-dehydratase compare
GFF1727 -2.0 -3.2 hypothetical protein compare
GFF293 -2.0 -3.7 hypothetical protein compare
GFF1302 -2.0 -2.6 Trigger factor compare
GFF214 -1.9 -9.3 Nitrate regulatory protein compare
GFF2762 -1.9 -5.0 Maltodextrin phosphorylase compare
GFF2105 -1.9 -3.0 tRNA modification GTPase MnmE compare
GFF1086 -1.9 -6.5 hypothetical protein compare
GFF1503 -1.9 -2.4 hypothetical protein compare
GFF2790 -1.8 -3.6 hypothetical protein compare
GFF2176 -1.8 -4.3 Lipoyl synthase compare
GFF2442 -1.7 -3.4 hypothetical protein compare
GFF292 -1.7 -3.0 hypothetical protein compare
GFF1191 -1.7 -3.7 Dual-specificity RNA methyltransferase RlmN compare
GFF2566 -1.7 -6.6 Arginine biosynthesis bifunctional protein ArgJ compare
GFF712 -1.7 -4.1 LL-diaminopimelate aminotransferase compare
GFF687 -1.6 -2.8 hypothetical protein compare
GFF620 -1.6 -3.9 Exoribonuclease 2 compare
GFF2325 -1.6 -3.7 Crossover junction endodeoxyribonuclease RuvC compare
GFF229 -1.6 -2.6 5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase compare
GFF2843 -1.5 -2.8 Diacylglycerol kinase compare
GFF1946 -1.5 -2.1 hypothetical protein compare
GFF2177 -1.5 -7.3 Octanoyltransferase compare
GFF330 -1.4 -6.5 Soluble pyridine nucleotide transhydrogenase compare
GFF1628 -1.4 -4.9 Deoxyuridine 5'-triphosphate nucleotidohydrolase compare
GFF615 -1.4 -3.5 Peroxide operon regulator compare
GFF2746 -1.4 -4.3 Fructose-1,6-bisphosphatase class 1 compare
GFF568 -1.4 -5.4 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase compare
GFF1749 -1.4 -3.6 Cytochrome c biogenesis protein CcsA compare
GFF683 -1.4 -3.9 tRNA dimethylallyltransferase compare
GFF1056 -1.4 -7.4 Bifunctional uridylyltransferase/uridylyl-removing enzyme compare
GFF2334 -1.4 -6.0 Cell division coordinator CpoB compare
GFF579 -1.4 -5.7 Acetolactate synthase isozyme 3 large subunit compare
GFF2735 -1.4 -5.1 Elongation factor 4 compare
GFF1301 -1.4 -4.1 2-iminobutanoate/2-iminopropanoate deaminase compare
GFF2322 -1.3 -3.2 hypothetical protein compare
GFF199 -1.3 -2.4 Nitrite reductase (NADH) small subunit compare
GFF685 -1.3 -3.9 hypothetical protein compare
GFF1213 -1.3 -3.1 Ribosomal large subunit pseudouridine synthase D compare
GFF1535 -1.3 -3.9 Tyrosine recombinase XerC compare
GFF688 -1.3 -3.2 hypothetical protein compare
GFF2796 -1.3 -4.2 Carboxymethylenebutenolidase compare
GFF1744 -1.3 -4.7 Queuine tRNA-ribosyltransferase compare
GFF674 -1.2 -5.2 Phosphoenolpyruvate synthase regulatory protein compare
GFF891 -1.2 -3.2 hypothetical protein compare
GFF2283 -1.2 -3.6 Beta-barrel assembly-enhancing protease compare
GFF2178 -1.2 -5.4 hypothetical protein compare
GFF382 -1.2 -8.0 hypothetical protein compare
GFF1328 -1.2 -3.1 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
GFF2326 -1.1 -2.7 Holliday junction ATP-dependent DNA helicase RuvA compare
GFF1126 -1.1 -2.2 Hypoxanthine-guanine phosphoribosyltransferase compare
GFF281 -1.1 -2.7 Protein InaA compare
GFF767 -1.1 -4.3 Ferredoxin compare
GFF1907 -1.1 -2.0 50S ribosomal protein L25 compare
GFF207 -1.1 -5.6 hypothetical protein compare
GFF842 -1.1 -2.0 Regulatory protein RecX compare
GFF841 -1.1 -3.2 Protein RecA compare
GFF1949 -1.1 -2.7 hypothetical protein compare
GFF131 -1.0 -4.7 Sulfate transport system permease protein CysT compare
GFF1639 -1.0 -3.1 hypothetical protein compare
GFF202 -1.0 -3.3 Assimilatory nitrite reductase [NAD(P)H] small subunit compare
GFF1693 -1.0 -2.6 Chaperone protein DnaJ compare
GFF2090 -1.0 -2.2 ATP synthase epsilon chain compare
GFF2327 -1.0 -1.8 Holliday junction ATP-dependent DNA helicase RuvB compare
GFF2576 -1.0 -4.6 Phosphate regulon transcriptional regulatory protein PhoB compare
GFF357 -1.0 -3.0 hypothetical protein compare
GFF1244 -1.0 -4.6 1,4-alpha-glucan branching enzyme GlgB compare
GFF571 -1.0 -5.4 hypothetical protein compare
GFF338 -1.0 -7.1 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex compare
GFF2324 -1.0 -2.2 Transcriptional regulatory protein PmpR compare
GFF2265 -1.0 -2.7 PTS system mannose-specific EIIAB component compare
GFF938 -0.9 -5.3 Triosephosphate isomerase compare
GFF321 -0.9 -3.8 Amylosucrase compare
GFF2578 -0.9 -1.9 putative glycosyltransferase compare
GFF339 -0.9 -8.0 Pyruvate dehydrogenase E1 component compare
GFF309 -0.9 -3.9 Outer membrane protein assembly factor BamE compare
GFF585 -0.9 -5.7 Glucose-1-phosphate cytidylyltransferase compare
GFF1050 -0.9 -2.1 15-cis-phytoene synthase compare
GFF1168 -0.9 -1.6 hypothetical protein compare
GFF2718 -0.9 -5.5 Phosphate regulon sensor protein PhoR compare
GFF1035 -0.9 -2.6 hypothetical protein compare
GFF130 -0.9 -4.2 Molybdate-binding protein ModA compare
GFF1247 -0.9 -2.4 4-alpha-glucanotransferase compare
GFF2569 -0.8 -4.0 hypothetical protein compare
GFF1514 -0.8 -2.1 Cytosol aminopeptidase compare
GFF1170 -0.8 -1.7 Small ribosomal subunit biogenesis GTPase RsgA compare
GFF901 -0.8 -4.8 Low affinity potassium transport system protein kup compare
GFF331 -0.8 -5.8 hypothetical protein compare
GFF584 -0.8 -5.3 CDP-glucose 4,6-dehydratase compare
GFF2191 -0.8 -6.4 Phosphomethylpyrimidine synthase compare
GFF2266 -0.8 -2.6 RNase adapter protein RapZ compare
GFF1281 -0.8 -4.9 ATP-dependent RNA helicase RhlE compare
GFF1458 -0.8 -2.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
GFF419 -0.8 -2.0 hypothetical protein compare
GFF2435 -0.8 -1.6 Molybdenum cofactor guanylyltransferase compare
GFF924 -0.8 -2.6 Beta-hexosaminidase compare
GFF206 -0.8 -2.7 Siroheme synthase compare
GFF2054 -0.8 -1.7 hypothetical protein compare
GFF200 -0.8 -5.0 Nitrite reductase [NAD(P)H] compare
GFF2436 -0.8 -4.4 GTP 3',8-cyclase compare
GFF1480 -0.8 -6.8 Vitamin B12 transporter BtuB compare
GFF835 -0.8 -3.0 Molybdopterin adenylyltransferase compare
GFF2737 -0.8 -2.5 hypothetical protein compare
GFF1325 -0.8 -2.6 hypothetical protein compare
GFF1060 -0.8 -3.0 Peroxiredoxin compare
GFF201 -0.7 -5.3 Periplasmic nitrate reductase compare
GFF1190 -0.7 -2.8 hypothetical protein compare
GFF1542 -0.7 -1.8 hypothetical protein compare
GFF2282 -0.7 -4.3 Cyclic pyranopterin monophosphate synthase compare
GFF138 -0.7 -1.6 hypothetical protein compare
GFF1169 -0.7 -3.7 Methanol dehydrogenase [cytochrome c] subunit 1 compare
GFF1194 -0.7 -4.3 Formyltransferase/hydrolase complex Fhc subunit A compare
GFF2457 -0.7 -1.5 Transcriptional regulator MraZ compare
GFF290 -0.7 -1.3 hypothetical protein compare
GFF2839 -0.7 -4.5 L-threonine dehydratase biosynthetic IlvA compare
GFF1282 -0.7 -3.8 GTP-binding protein TypA/BipA compare
GFF680 -0.7 -2.8 hypothetical protein compare
GFF313 -0.7 -1.2 Transcription elongation factor GreA compare
GFF208 -0.7 -1.6 Bicarbonate transport ATP-binding protein CmpD compare
GFF2738 -0.7 -1.5 Ribonuclease 3 compare
GFF808 -0.6 -3.4 hypothetical protein compare
GFF2748 -0.6 -1.1 Bifunctional PGK/TIM compare
GFF1292 -0.6 -2.7 hypothetical protein compare
GFF209 -0.6 -3.3 Nitrate import permease protein NrtB compare
GFF2434 -0.6 -2.7 Molybdopterin molybdenumtransferase compare
GFF132 -0.6 -3.4 Vitamin B12 import ATP-binding protein BtuD compare
GFF889 -0.6 -1.3 Single-stranded-DNA-specific exonuclease RecJ compare
GFF1276 -0.6 -3.8 Vitamin B12 transporter BtuB compare
GFF2583 -0.6 -1.9 Nickel and cobalt resistance protein CnrB compare
GFF583 -0.6 -3.8 hypothetical protein compare
GFF1322 -0.6 -2.0 Glucose-1-phosphate thymidylyltransferase compare
GFF164 -0.6 -1.3 hypothetical protein compare
GFF1491 -0.6 -2.5 hypothetical protein compare
GFF1904 -0.6 -2.4 Ribosome-binding ATPase YchF compare
GFF654 -0.6 -2.6 tRNA pseudouridine synthase A compare
GFF795 -0.6 -1.1 hypothetical protein compare
GFF242 -0.6 -1.9 hypothetical protein compare
GFF1231 -0.6 -3.5 hypothetical protein compare
GFF434 -0.6 -1.8 HTH-type transcriptional regulator IscR compare
GFF678 -0.6 -3.3 hypothetical protein compare
GFF278 -0.6 -2.4 Ribosomal large subunit pseudouridine synthase E compare
GFF1966 -0.6 -1.0 hypothetical protein compare
GFF2022 -0.6 -2.5 hypothetical protein compare
GFF287 -0.6 -1.2 hypothetical protein compare
GFF192 -0.6 -1.6 hypothetical protein compare
GFF210 -0.6 -3.6 Nitrate/nitrite binding protein NrtA compare
GFF1223 -0.6 -2.2 hypothetical protein compare
GFF360 -0.6 -1.8 RecBCD enzyme subunit RecB compare
GFF88 -0.6 -1.5 Response regulator UvrY compare
GFF1626 -0.6 -1.1 50S ribosomal protein L33 compare
GFF684 -0.6 -2.6 hypothetical protein compare
GFF458 -0.5 -3.8 hypothetical protein compare
GFF2449 -0.5 -2.2 hypothetical protein compare
GFF2695 -0.5 -1.2 Outer membrane lipoprotein pcp compare
GFF1131 -0.5 -1.6 Transcriptional regulatory protein OmpR compare
GFF676 -0.5 -2.2 hypothetical protein compare
GFF2224 -0.5 -4.0 Ammonia channel compare
GFF1141 -0.5 -1.8 Persistence and stress-resistance toxin PasT compare
GFF651 -0.5 -1.1 hypothetical protein compare
GFF995 -0.5 -2.7 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme compare
GFF572 -0.5 -4.2 hypothetical protein compare
GFF1296 -0.5 -2.6 hypothetical protein compare
GFF689 -0.5 -1.0 hypothetical protein compare
GFF264 -0.5 -2.9 N-acetylmuramate/N-acetylglucosamine kinase compare
GFF1193 -0.5 -2.7 hypothetical protein compare
GFF788 -0.5 -3.7 hypothetical protein compare
GFF354 -0.5 -2.7 Membrane-bound lytic murein transglycosylase F compare
GFF2342 -0.5 -1.7 Tyrosine recombinase XerD compare
GFF1238 -0.5 -1.6 Nucleoid-associated protein YbaB compare
GFF203 -0.5 -3.2 Serine/threonine-protein kinase PknD compare
GFF2568 -0.5 -2.9 Cell division coordinator CpoB compare
GFF1196 -0.5 -2.5 Formyltransferase/hydrolase complex Fhc subunit C compare
GFF1805 -0.5 -2.2 HTH-type transcriptional repressor ComR compare
GFF668 -0.5 -1.5 Coenzyme PQQ synthesis protein B compare
GFF2136 -0.5 -2.0 Ribonuclease PH compare
GFF925 -0.5 -2.5 hypothetical protein compare
GFF2296 -0.5 -1.8 hypothetical protein compare
GFF1460 -0.5 -2.8 Putative phosphoserine phosphatase 2 compare
GFF73 -0.5 -2.1 Transcriptional repressor NrdR compare
GFF2339 -0.5 -1.1 tRNA (guanine-N(1)-)-methyltransferase compare
GFF1113 -0.5 -2.5 Intermembrane transport lipoprotein PqiC compare
GFF1036 -0.5 -2.9 Lon protease compare


Specific Phenotypes

None in this experiment

For Methylophilus sp. DMC18 in carbon source experiments

For carbon source Methanol across organisms