Experiment set1S72 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; ambient oxygen

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_05690 +1.6 12.0 Protein phosphotransferase ChpT compare
MPMX19_01349 +1.6 12.9 hypothetical protein compare
MPMX19_01479 +1.6 9.9 hypothetical protein compare
MPMX19_04198 +1.6 13.8 hypothetical protein compare
MPMX19_04225 +1.5 7.1 hypothetical protein compare
MPMX19_01482 +1.5 12.9 hypothetical protein compare
MPMX19_01480 +1.5 8.8 hypothetical protein compare
MPMX19_04199 +1.4 10.0 Pseudaminic acid synthase compare
MPMX19_04204 +1.4 10.3 D-alanine--D-alanyl carrier protein ligase compare
MPMX19_06577 +1.4 10.9 hypothetical protein compare
MPMX19_04258 +1.3 5.2 hypothetical protein compare
MPMX19_02460 +1.3 12.5 Motility protein A compare
MPMX19_04094 +1.3 10.3 Flagellar M-ring protein compare
MPMX19_05685 +1.3 10.4 Protein-glutamate methylesterase/protein-glutamine glutaminase 2 compare
MPMX19_01484 +1.3 8.0 Flagellar basal-body rod protein FlgG compare
MPMX19_06581 +1.3 9.5 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 compare
MPMX19_00866 +1.3 8.6 Flagellar biosynthetic protein FliR compare
MPMX19_05687 +1.2 7.5 Chemotaxis protein CheW compare
MPMX19_04090 +1.2 9.7 Anaerobic nitric oxide reductase transcription regulator NorR compare
MPMX19_06545 +1.2 11.4 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
MPMX19_04200 +1.2 8.1 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase compare
MPMX19_06544 +1.2 10.4 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
MPMX19_05254 +1.2 3.2 Carbon monoxide dehydrogenase small chain compare
MPMX19_04088 +1.2 5.1 Signal recognition particle 54 kDa protein compare
MPMX19_01485 +1.2 9.1 hypothetical protein compare
MPMX19_01483 +1.2 9.1 Flagellar basal-body rod protein FlgG compare
MPMX19_00863 +1.2 8.1 Flagellar basal-body rod protein FlgC compare
MPMX19_00438 +1.2 10.0 (R)-specific enoyl-CoA hydratase compare
MPMX19_05679 +1.2 8.7 Flagellum-specific ATP synthase compare
MPMX19_00472 +1.2 2.3 Protein HesB, heterocyst compare
MPMX19_01481 +1.2 9.7 Flagellar motor switch protein FliM compare
MPMX19_00708 +1.2 9.7 hypothetical protein compare
MPMX19_04222 +1.2 10.3 hypothetical protein compare
MPMX19_00864 +1.1 4.2 Flagellar hook-basal body complex protein FliE compare
MPMX19_04206 +1.1 6.6 3-oxoacyl-[acyl-carrier-protein] synthase 3 compare
MPMX19_04000 +1.1 4.6 Flagellar motor switch protein FliG compare
MPMX19_06585 +1.1 10.8 hypothetical protein compare
MPMX19_04205 +1.1 4.7 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_01486 +1.1 8.1 Flagellar L-ring protein compare
MPMX19_00311 +1.1 10.3 hypothetical protein compare
MPMX19_04093 +1.1 4.0 hypothetical protein compare
MPMX19_00868 +1.1 10.4 Sensor kinase CckA compare
MPMX19_01495 +1.1 3.5 hypothetical protein compare
MPMX19_03976 +1.1 5.5 hypothetical protein compare
MPMX19_01494 +1.1 7.8 Flagellar P-ring protein compare
MPMX19_04089 +1.1 9.2 Flagellar biosynthesis protein FlhA compare
MPMX19_00854 +1.1 9.9 hypothetical protein compare
MPMX19_04212 +1.1 9.1 Photosystem I assembly protein Ycf3 compare
MPMX19_05623 +1.1 5.4 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_04223 +1.0 9.1 hypothetical protein compare
MPMX19_01493 +1.0 3.2 Flagellar assembly protein FliX compare
MPMX19_00212 +1.0 9.1 Nitrogen fixation regulation protein FixK compare
MPMX19_04224 +1.0 9.8 hypothetical protein compare
MPMX19_05714 +1.0 6.8 hypothetical protein compare
MPMX19_06547 +1.0 6.4 hypothetical protein compare
MPMX19_06580 +1.0 5.7 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_04622 +1.0 7.5 hypothetical protein compare
MPMX19_04209 +1.0 8.5 Lipopolysaccharide assembly protein B compare
MPMX19_00867 +1.0 8.6 Flagellar biosynthetic protein FlhB compare
MPMX19_04087 +1.0 3.0 Flagellum site-determining protein YlxH compare
MPMX19_06584 +1.0 8.9 Asparagine synthetase [glutamine-hydrolyzing] 1 compare
MPMX19_03786 +1.0 3.0 hypothetical protein compare
MPMX19_01781 +1.0 7.9 Enoyl-[acyl-carrier-protein] reductase [NADH] FabI compare
MPMX19_04551 +1.0 2.3 HTH-type transcriptional repressor RspR compare
MPMX19_05622 +0.9 7.4 Sensor histidine kinase RegB compare
MPMX19_05678 +0.9 6.0 hypothetical protein compare
MPMX19_04207 +0.9 3.7 hypothetical protein compare
MPMX19_01496 +0.9 6.4 hypothetical protein compare
MPMX19_01497 +0.9 4.2 hypothetical protein compare
MPMX19_02778 +0.9 3.0 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_05688 +0.9 6.1 Sensor histidine kinase RcsC compare
MPMX19_00862 +0.8 6.5 hypothetical protein compare
MPMX19_06582 +0.8 7.4 hypothetical protein compare
MPMX19_02039 +0.8 3.3 hypothetical protein compare
MPMX19_01811 +0.8 2.9 hypothetical protein compare
MPMX19_00515 +0.8 6.2 hypothetical protein compare
MPMX19_02668 +0.8 6.1 RNA polymerase sigma-54 factor 2 compare
MPMX19_06808 +0.8 2.3 HTH-type transcriptional regulator DmlR compare
MPMX19_06644 +0.8 7.2 GDP-mannose 4,6-dehydratase compare
MPMX19_06763 +0.8 3.4 hypothetical protein compare
MPMX19_04579 +0.8 3.3 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX19_02815 +0.8 2.6 2-keto-4-pentenoate hydratase compare
MPMX19_00853 +0.8 5.4 hypothetical protein compare
MPMX19_06734 +0.8 7.2 Alginate biosynthesis protein AlgA compare
MPMX19_04092 +0.8 4.9 Flagellar motor switch protein FliN compare
MPMX19_03699 +0.8 2.2 Maltose/maltodextrin import ATP-binding protein MalK compare
MPMX19_06578 +0.8 5.2 hypothetical protein compare
MPMX19_04624 +0.8 5.1 hypothetical protein compare
MPMX19_06510 +0.7 2.2 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_00129 +0.7 1.0 hypothetical protein compare
MPMX19_01955 +0.7 1.4 Putative anti-sigma factor antagonist compare
MPMX19_01702 +0.7 2.2 Inorganic triphosphatase compare
MPMX19_04091 +0.7 4.7 Chemotaxis protein PomA compare
MPMX19_04779 +0.7 2.3 hypothetical protein compare
MPMX19_00923 +0.7 2.0 hypothetical protein compare
MPMX19_05333 +0.7 2.0 Thymidine phosphorylase compare
MPMX19_02499 +0.7 2.1 hypothetical protein compare
MPMX19_00210 +0.7 3.5 hypothetical protein compare
MPMX19_01956 +0.7 3.0 hypothetical protein compare
MPMX19_02874 +0.7 2.5 HTH-type transcriptional regulator SutR compare
MPMX19_03939 +0.7 2.1 Enoyl-CoA-hydratase compare
MPMX19_06272 +0.7 1.0 hypothetical protein compare
MPMX19_06464 +0.7 2.2 Tryptophan synthase beta chain compare
MPMX19_00142 +0.7 0.9 hypothetical protein compare
MPMX19_06759 +0.6 1.6 Taurine import ATP-binding protein TauB compare
MPMX19_01498 +0.6 5.2 hypothetical protein compare
MPMX19_03655 +0.6 1.2 hypothetical protein compare
MPMX19_04623 +0.6 3.3 hypothetical protein compare
MPMX19_06886 +0.6 3.0 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_05575 +0.6 2.6 hypothetical protein compare
MPMX19_05621 +0.6 3.4 ABC transporter ATP-binding protein NatA compare
MPMX19_04913 +0.6 1.6 hypothetical protein compare
MPMX19_00318 +0.6 3.0 hypothetical protein compare
MPMX19_06856 +0.6 3.3 Riboflavin transporter compare
MPMX19_01645 +0.6 1.5 HTH-type transcriptional regulator GltC compare
MPMX19_06648 +0.6 3.4 hypothetical protein compare
MPMX19_01394 +0.6 1.4 hypothetical protein compare
MPMX19_01947 +0.6 2.0 Chemotaxis protein CheY compare
MPMX19_06197 +0.6 1.3 hypothetical protein compare
MPMX19_00858 +0.6 3.0 Flagellar biosynthetic protein FliP compare
MPMX19_02746 +0.6 4.3 Peptidyl-lysine N-acetyltransferase Pat compare
MPMX19_02787 +0.6 2.2 (R)-benzylsuccinyl-CoA dehydrogenase compare
MPMX19_01159 +0.6 5.1 Presqualene diphosphate synthase compare
MPMX19_04276 +0.6 1.9 hypothetical protein compare
MPMX19_03735 +0.6 1.7 Transposon Tn10 TetC protein compare
MPMX19_02085 +0.6 2.1 hypothetical protein compare
MPMX19_03728 +0.6 1.2 hypothetical protein compare
MPMX19_04799 +0.6 2.3 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_03825 +0.6 1.5 IS5 family transposase IS4811 compare
MPMX19_04986 +0.6 1.9 hypothetical protein compare
MPMX19_02492 +0.6 1.8 hypothetical protein compare
MPMX19_06690 +0.6 3.0 hypothetical protein compare
MPMX19_00852 +0.6 1.2 hypothetical protein compare
MPMX19_03618 +0.6 3.3 hypothetical protein compare
MPMX19_03001 +0.6 1.9 Ribulokinase compare
MPMX19_03900 +0.6 2.3 Hca operon transcriptional activator HcaR compare
MPMX19_04095 +0.6 2.2 hypothetical protein compare
MPMX19_04208 +0.6 2.2 flagellum biosynthesis repressor protein FlbT compare
MPMX19_02091 +0.6 2.5 hypothetical protein compare
MPMX19_06866 +0.5 1.9 HTH-type transcriptional regulator NimR compare
MPMX19_04687 +0.5 1.3 Atrazine chlorohydrolase compare
MPMX19_02865 +0.5 1.9 hypothetical protein compare
MPMX19_03816 +0.5 1.6 hypothetical protein compare
MPMX19_02806 +0.5 1.6 HTH-type transcriptional regulator DmlR compare
MPMX19_01949 +0.5 4.8 Chemotaxis protein CheW compare
MPMX19_04202 +0.5 1.7 Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system compare
MPMX19_04392 +0.5 1.6 Bifunctional methionine biosynthesis protein MetXA/MetW compare
MPMX19_06932 +0.5 2.0 hypothetical protein compare
MPMX19_06989 +0.5 1.6 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_05295 +0.5 1.6 hypothetical protein compare
MPMX19_02514 +0.5 1.1 hypothetical protein compare
MPMX19_03637 +0.5 2.9 Nopaline-binding periplasmic protein compare
MPMX19_04458 +0.5 2.0 2-hydroxy-3-oxopropionate reductase compare
MPMX19_04968 +0.5 1.5 hypothetical protein compare
MPMX19_04863 +0.5 1.1 Transcriptional regulatory protein LnrK compare
MPMX19_04096 +0.5 3.1 hypothetical protein compare
MPMX19_06281 +0.5 2.1 hypothetical protein compare
MPMX19_06488 +0.5 1.5 Taurine-binding periplasmic protein compare
MPMX19_02664 +0.5 0.9 Arabinose 5-phosphate isomerase KdsD compare
MPMX19_06235 +0.5 1.5 Glycine cleavage system transcriptional activator compare
MPMX19_05656 +0.5 1.5 HTH-type transcriptional activator RhaR compare
MPMX19_04390 +0.5 1.7 hypothetical protein compare
MPMX19_06506 +0.5 1.3 hypothetical protein compare
MPMX19_05234 +0.5 1.7 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_02109 +0.5 2.2 hypothetical protein compare
MPMX19_05199 +0.5 2.4 Zinc transport protein ZntB compare
MPMX19_05065 +0.5 1.4 Farnesyl diphosphate synthase compare
MPMX19_00534 +0.5 3.1 hypothetical protein compare
MPMX19_00851 +0.5 3.4 hypothetical protein compare
MPMX19_03716 +0.5 2.0 hypothetical protein compare
MPMX19_01652 +0.5 1.5 hypothetical protein compare
MPMX19_04633 +0.5 1.8 hypothetical protein compare
MPMX19_03916 +0.5 1.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
MPMX19_01948 +0.5 3.9 Chemotaxis protein CheA compare
MPMX19_03965 +0.5 4.7 Poly(3-hydroxyalkanoate) polymerase subunit PhaC compare
MPMX19_05581 +0.5 0.7 hypothetical protein compare
MPMX19_02703 +0.5 1.1 hypothetical protein compare
MPMX19_05786 +0.5 2.1 HTH-type transcriptional repressor RspR compare
MPMX19_03846 +0.5 1.7 hypothetical protein compare
MPMX19_05745 +0.5 3.8 Sensor histidine kinase RcsC compare
MPMX19_04791 +0.5 1.2 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial compare
MPMX19_05652 +0.5 1.7 hypothetical protein compare
MPMX19_03766 +0.5 2.2 Sensor histidine kinase RcsC compare
MPMX19_06569 +0.5 1.3 hypothetical protein compare
MPMX19_05684 +0.5 3.2 Chemotaxis protein methyltransferase 1 compare
MPMX19_06216 +0.5 2.0 Inner membrane ABC transporter permease protein YtfT compare
MPMX19_06042 +0.5 2.7 hypothetical protein compare
MPMX19_04154 +0.5 1.8 hypothetical protein compare
MPMX19_03340 +0.5 1.6 hypothetical protein compare
MPMX19_06099 +0.5 3.6 hypothetical protein compare
MPMX19_01875 +0.5 1.8 hypothetical protein compare
MPMX19_02674 +0.5 1.1 NADH:quinone reductase compare
MPMX19_02811 +0.5 1.3 Long-chain-alcohol dehydrogenase 1 compare
MPMX19_00112 +0.5 2.0 Multidrug transporter EmrE compare
MPMX19_05839 +0.5 2.6 Chemoreceptor glutamine deamidase CheD compare
MPMX19_06579 +0.5 1.2 Carnitine monooxygenase oxygenase subunit compare
MPMX19_04985 +0.5 1.1 HTH-type transcriptional regulator DmlR compare
MPMX19_02565 +0.5 4.4 hypothetical protein compare
MPMX19_06594 +0.5 4.3 hypothetical protein compare
MPMX19_01617 +0.5 0.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm; ambient oxygen experiments