Experiment set1S71 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; ambient oxygen

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_05690 +1.6 11.2 Protein phosphotransferase ChpT compare
MPMX19_01479 +1.5 9.9 hypothetical protein compare
MPMX19_01349 +1.5 11.7 hypothetical protein compare
MPMX19_01480 +1.5 9.0 hypothetical protein compare
MPMX19_04198 +1.5 12.8 hypothetical protein compare
MPMX19_01482 +1.4 11.4 hypothetical protein compare
MPMX19_02460 +1.4 13.1 Motility protein A compare
MPMX19_00708 +1.3 10.7 hypothetical protein compare
MPMX19_04088 +1.3 4.8 Signal recognition particle 54 kDa protein compare
MPMX19_05685 +1.3 9.9 Protein-glutamate methylesterase/protein-glutamine glutaminase 2 compare
MPMX19_01494 +1.2 9.4 Flagellar P-ring protein compare
MPMX19_06510 +1.2 4.4 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_04225 +1.2 7.7 hypothetical protein compare
MPMX19_06580 +1.2 6.6 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_06581 +1.2 9.5 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 compare
MPMX19_01486 +1.2 8.3 Flagellar L-ring protein compare
MPMX19_01493 +1.2 2.9 Flagellar assembly protein FliX compare
MPMX19_00438 +1.2 10.0 (R)-specific enoyl-CoA hydratase compare
MPMX19_01781 +1.1 9.7 Enoyl-[acyl-carrier-protein] reductase [NADH] FabI compare
MPMX19_06545 +1.1 10.5 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
MPMX19_06544 +1.1 10.0 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
MPMX19_01495 +1.1 3.9 hypothetical protein compare
MPMX19_06577 +1.1 8.8 hypothetical protein compare
MPMX19_01481 +1.1 9.2 Flagellar motor switch protein FliM compare
MPMX19_00868 +1.1 10.2 Sensor kinase CckA compare
MPMX19_04090 +1.0 8.3 Anaerobic nitric oxide reductase transcription regulator NorR compare
MPMX19_04204 +1.0 7.7 D-alanine--D-alanyl carrier protein ligase compare
MPMX19_01485 +1.0 8.6 hypothetical protein compare
MPMX19_04199 +1.0 7.9 Pseudaminic acid synthase compare
MPMX19_04206 +1.0 6.2 3-oxoacyl-[acyl-carrier-protein] synthase 3 compare
MPMX19_00854 +1.0 9.5 hypothetical protein compare
MPMX19_01484 +1.0 7.1 Flagellar basal-body rod protein FlgG compare
MPMX19_00864 +1.0 4.3 Flagellar hook-basal body complex protein FliE compare
MPMX19_06585 +1.0 9.3 hypothetical protein compare
MPMX19_03976 +1.0 6.2 hypothetical protein compare
MPMX19_04212 +1.0 8.6 Photosystem I assembly protein Ycf3 compare
MPMX19_04205 +1.0 3.4 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_04258 +1.0 3.3 hypothetical protein compare
MPMX19_06456 +1.0 2.7 hypothetical protein compare
MPMX19_00311 +1.0 9.0 hypothetical protein compare
MPMX19_06197 +1.0 1.3 hypothetical protein compare
MPMX19_05586 +1.0 2.3 hypothetical protein compare
MPMX19_04224 +1.0 9.1 hypothetical protein compare
MPMX19_04209 +1.0 8.2 Lipopolysaccharide assembly protein B compare
MPMX19_04222 +0.9 8.5 hypothetical protein compare
MPMX19_01483 +0.9 8.0 Flagellar basal-body rod protein FlgG compare
MPMX19_00212 +0.9 8.0 Nitrogen fixation regulation protein FixK compare
MPMX19_04200 +0.9 6.4 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase compare
MPMX19_06381 +0.9 2.2 putative manganese efflux pump MntP compare
MPMX19_04089 +0.9 8.2 Flagellar biosynthesis protein FlhA compare
MPMX19_04094 +0.9 6.9 Flagellar M-ring protein compare
MPMX19_06582 +0.9 7.9 hypothetical protein compare
MPMX19_00866 +0.9 6.3 Flagellar biosynthetic protein FliR compare
MPMX19_00863 +0.9 6.5 Flagellar basal-body rod protein FlgC compare
MPMX19_05622 +0.9 7.1 Sensor histidine kinase RegB compare
MPMX19_04000 +0.9 2.9 Flagellar motor switch protein FliG compare
MPMX19_05687 +0.9 5.5 Chemotaxis protein CheW compare
MPMX19_04223 +0.9 8.0 hypothetical protein compare
MPMX19_05679 +0.9 7.0 Flagellum-specific ATP synthase compare
MPMX19_04726 +0.9 3.1 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_06584 +0.9 8.0 Asparagine synthetase [glutamine-hydrolyzing] 1 compare
MPMX19_01497 +0.8 3.8 hypothetical protein compare
MPMX19_04093 +0.8 3.3 hypothetical protein compare
MPMX19_04207 +0.8 3.7 hypothetical protein compare
MPMX19_00858 +0.8 4.2 Flagellar biosynthetic protein FliP compare
MPMX19_05714 +0.8 6.0 hypothetical protein compare
MPMX19_01947 +0.8 3.9 Chemotaxis protein CheY compare
MPMX19_00867 +0.8 7.2 Flagellar biosynthetic protein FlhB compare
MPMX19_05623 +0.8 3.5 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_04622 +0.8 6.2 hypothetical protein compare
MPMX19_04092 +0.8 5.1 Flagellar motor switch protein FliN compare
MPMX19_01059 +0.8 1.3 hypothetical protein compare
MPMX19_00515 +0.8 5.9 hypothetical protein compare
MPMX19_05686 +0.8 3.2 Chemotaxis protein CheY compare
MPMX19_05688 +0.8 5.8 Sensor histidine kinase RcsC compare
MPMX19_02668 +0.8 6.0 RNA polymerase sigma-54 factor 2 compare
MPMX19_00862 +0.7 5.6 hypothetical protein compare
MPMX19_00208 +0.7 2.3 hypothetical protein compare
MPMX19_04682 +0.7 1.9 hypothetical protein compare
MPMX19_04624 +0.7 5.3 hypothetical protein compare
MPMX19_06467 +0.7 3.2 hypothetical protein compare
MPMX19_03123 +0.7 1.9 Citrate lyase acyl carrier protein compare
MPMX19_05725 +0.7 1.9 hypothetical protein compare
MPMX19_03710 +0.7 3.2 Glycine cleavage system transcriptional activator compare
MPMX19_05379 +0.7 3.3 hypothetical protein compare
MPMX19_02039 +0.7 4.3 hypothetical protein compare
MPMX19_01729 +0.7 1.7 Ethylmalonyl-CoA/methylmalonyl-CoA epimerase compare
MPMX19_05678 +0.7 4.1 hypothetical protein compare
MPMX19_06773 +0.7 2.7 2-(R)-hydroxypropyl-CoM dehydrogenase compare
MPMX19_05104 +0.7 1.6 hypothetical protein compare
MPMX19_02746 +0.7 5.0 Peptidyl-lysine N-acetyltransferase Pat compare
MPMX19_06099 +0.7 5.5 hypothetical protein compare
MPMX19_04743 +0.7 2.0 Formyltransferase/hydrolase complex subunit D compare
MPMX19_06211 +0.6 1.5 tRNA-Ala compare
MPMX19_01159 +0.6 5.6 Presqualene diphosphate synthase compare
MPMX19_04091 +0.6 4.6 Chemotaxis protein PomA compare
MPMX19_05176 +0.6 1.7 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase compare
MPMX19_00860 +0.6 2.1 hypothetical protein compare
MPMX19_06644 +0.6 5.8 GDP-mannose 4,6-dehydratase compare
MPMX19_05362 +0.6 1.9 hypothetical protein compare
MPMX19_04734 +0.6 2.9 5,6,7,8-tetrahydromethanopterin hydro-lyase compare
MPMX19_00852 +0.6 1.6 hypothetical protein compare
MPMX19_01955 +0.6 0.7 Putative anti-sigma factor antagonist compare
MPMX19_05181 +0.6 1.6 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_04986 +0.6 1.7 hypothetical protein compare
MPMX19_06914 +0.6 1.7 Acyl-CoA dehydrogenase FadE27 compare
MPMX19_05862 +0.6 3.1 3-carboxy-cis,cis-muconate cycloisomerase compare
MPMX19_01067 +0.6 1.2 hypothetical protein compare
MPMX19_00297 +0.6 1.6 4-carboxy-4-hydroxy-2-oxoadipate aldolase compare
MPMX19_06924 +0.6 2.4 hypothetical protein compare
MPMX19_05726 +0.6 1.8 hypothetical protein compare
MPMX19_00725 +0.6 3.8 Transcriptional regulatory protein ros compare
MPMX19_03435 +0.6 1.4 hypothetical protein compare
MPMX19_06874 +0.6 1.5 hypothetical protein compare
MPMX19_03934 +0.6 1.8 hypothetical protein compare
MPMX19_06917 +0.6 2.0 HTH-type transcriptional regulator PgrR compare
MPMX19_05068 +0.6 2.1 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA compare
MPMX19_06734 +0.6 5.2 Alginate biosynthesis protein AlgA compare
MPMX19_02424 +0.6 1.9 hypothetical protein compare
MPMX19_06230 +0.6 1.6 hypothetical protein compare
MPMX19_04202 +0.6 2.8 Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system compare
MPMX19_01948 +0.6 4.6 Chemotaxis protein CheA compare
MPMX19_06106 +0.6 2.6 Bacteriohemerythrin compare
MPMX19_01949 +0.6 5.0 Chemotaxis protein CheW compare
MPMX19_04623 +0.6 3.1 hypothetical protein compare
MPMX19_00853 +0.5 4.1 hypothetical protein compare
MPMX19_04644 +0.5 1.8 hypothetical protein compare
MPMX19_01864 +0.5 1.6 Regulatory protein AtoC compare
MPMX19_01617 +0.5 1.3 hypothetical protein compare
MPMX19_06594 +0.5 5.0 hypothetical protein compare
MPMX19_05224 +0.5 1.6 hypothetical protein compare
MPMX19_02094 +0.5 2.4 hypothetical protein compare
MPMX19_01083 +0.5 2.5 hypothetical protein compare
MPMX19_00718 +0.5 1.6 hypothetical protein compare
MPMX19_05152 +0.5 1.9 Phosphonoacetaldehyde hydrolase compare
MPMX19_01496 +0.5 4.0 hypothetical protein compare
MPMX19_01978 +0.5 1.3 hypothetical protein compare
MPMX19_03789 +0.5 2.6 hypothetical protein compare
MPMX19_01755 +0.5 2.5 hypothetical protein compare
MPMX19_00851 +0.5 3.5 hypothetical protein compare
MPMX19_05581 +0.5 1.3 hypothetical protein compare
MPMX19_06759 +0.5 1.8 Taurine import ATP-binding protein TauB compare
MPMX19_02816 +0.5 1.4 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_05352 +0.5 1.6 putative cysteine-rich protein YhjQ compare
MPMX19_06979 +0.5 1.2 hypothetical protein compare
MPMX19_06579 +0.5 1.4 Carnitine monooxygenase oxygenase subunit compare
MPMX19_06207 +0.5 1.5 hypothetical protein compare
MPMX19_02874 +0.5 2.1 HTH-type transcriptional regulator SutR compare
MPMX19_06578 +0.5 3.6 hypothetical protein compare
MPMX19_01766 +0.5 2.8 Phosphate-specific transport system accessory protein PhoU compare
MPMX19_00822 +0.5 3.2 Divalent metal cation transporter MntH compare
MPMX19_01178 +0.5 4.4 hypothetical protein compare
MPMX19_06315 +0.5 1.6 ISL3 family transposase ISAli18 compare
MPMX19_03575 +0.5 1.7 HTH-type transcriptional regulator NimR compare
MPMX19_01652 +0.5 2.0 hypothetical protein compare
MPMX19_00956 +0.5 1.6 hypothetical protein compare
MPMX19_04276 +0.5 1.6 hypothetical protein compare
MPMX19_03618 +0.5 2.7 hypothetical protein compare
MPMX19_03127 +0.5 1.0 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase compare
MPMX19_03095 +0.5 0.9 hypothetical protein compare
MPMX19_00861 +0.5 3.6 hypothetical protein compare
MPMX19_06610 +0.5 1.2 hypothetical protein compare
MPMX19_03816 +0.5 1.5 hypothetical protein compare
MPMX19_01089 +0.5 2.9 hypothetical protein compare
MPMX19_04043 +0.5 1.8 Aldehyde-alcohol dehydrogenase compare
MPMX19_01498 +0.5 3.8 hypothetical protein compare
MPMX19_06042 +0.5 2.8 hypothetical protein compare
MPMX19_04549 +0.5 2.0 L-cystine-binding protein FliY compare
MPMX19_05430 +0.5 1.6 HTH-type transcriptional regulator DmlR compare
MPMX19_04633 +0.5 1.9 hypothetical protein compare
MPMX19_05684 +0.5 3.0 Chemotaxis protein methyltransferase 1 compare
MPMX19_06526 +0.5 2.2 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_01956 +0.5 2.2 hypothetical protein compare
MPMX19_02063 +0.4 2.0 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_04114 +0.4 2.1 hypothetical protein compare
MPMX19_05745 +0.4 3.6 Sensor histidine kinase RcsC compare
MPMX19_05798 +0.4 1.3 HTH-type transcriptional repressor NanR compare
MPMX19_04737 +0.4 2.0 Methenyltetrahydromethanopterin cyclohydrolase compare
MPMX19_02880 +0.4 2.5 hypothetical protein compare
MPMX19_01394 +0.4 1.1 hypothetical protein compare
MPMX19_05599 +0.4 1.6 hypothetical protein compare
MPMX19_01605 +0.4 3.1 Chemotaxis protein CheY compare
MPMX19_01012 +0.4 1.6 Cyclic pyranopterin monophosphate synthase compare
MPMX19_00244 +0.4 1.9 hypothetical protein compare
MPMX19_05082 +0.4 1.5 hypothetical protein compare
MPMX19_01616 +0.4 1.0 hypothetical protein compare
MPMX19_06297 +0.4 0.8 hypothetical protein compare
MPMX19_03093 +0.4 1.7 Manganese import ATP-binding protein ScaC compare
MPMX19_05199 +0.4 2.3 Zinc transport protein ZntB compare
MPMX19_04208 +0.4 1.8 flagellum biosynthesis repressor protein FlbT compare
MPMX19_02865 +0.4 1.2 hypothetical protein compare
MPMX19_04670 +0.4 1.8 hypothetical protein compare
MPMX19_03819 +0.4 2.0 NADP-reducing hydrogenase subunit HndA compare
MPMX19_06864 +0.4 2.0 hypothetical protein compare
MPMX19_06776 +0.4 1.4 hypothetical protein compare
MPMX19_04120 +0.4 1.6 hypothetical protein compare
MPMX19_01401 +0.4 1.2 Ubiquinone biosynthesis accessory factor UbiK compare
MPMX19_02313 +0.4 2.8 Oxygen-independent coproporphyrinogen III oxidase compare
MPMX19_03527 +0.4 1.5 hypothetical protein compare
MPMX19_00152 +0.4 1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm; ambient oxygen experiments