Experiment set1S70 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; ambient oxygen

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_05690 +1.4 10.5 Protein phosphotransferase ChpT compare
MPMX19_01349 +1.4 10.3 hypothetical protein compare
MPMX19_02460 +1.2 11.4 Motility protein A compare
MPMX19_01493 +1.2 4.6 Flagellar assembly protein FliX compare
MPMX19_01480 +1.2 6.0 hypothetical protein compare
MPMX19_01482 +1.1 9.4 hypothetical protein compare
MPMX19_04198 +1.1 9.8 hypothetical protein compare
MPMX19_01955 +1.0 2.2 Putative anti-sigma factor antagonist compare
MPMX19_05685 +1.0 7.6 Protein-glutamate methylesterase/protein-glutamine glutaminase 2 compare
MPMX19_00708 +1.0 8.6 hypothetical protein compare
MPMX19_00212 +1.0 8.6 Nitrogen fixation regulation protein FixK compare
MPMX19_04088 +1.0 4.4 Signal recognition particle 54 kDa protein compare
MPMX19_01781 +1.0 8.1 Enoyl-[acyl-carrier-protein] reductase [NADH] FabI compare
MPMX19_00515 +1.0 7.4 hypothetical protein compare
MPMX19_00438 +1.0 8.3 (R)-specific enoyl-CoA hydratase compare
MPMX19_05622 +0.9 7.2 Sensor histidine kinase RegB compare
MPMX19_00868 +0.9 8.2 Sensor kinase CckA compare
MPMX19_05623 +0.9 4.7 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_04225 +0.9 4.5 hypothetical protein compare
MPMX19_05379 +0.8 3.6 hypothetical protein compare
MPMX19_05687 +0.8 5.0 Chemotaxis protein CheW compare
MPMX19_06520 +0.8 3.0 Nitrate import ATP-binding protein NrtC compare
MPMX19_06763 +0.8 2.9 hypothetical protein compare
MPMX19_04090 +0.8 6.1 Anaerobic nitric oxide reductase transcription regulator NorR compare
MPMX19_03072 +0.8 1.7 hypothetical protein compare
MPMX19_01495 +0.8 2.7 hypothetical protein compare
MPMX19_04093 +0.8 3.3 hypothetical protein compare
MPMX19_01479 +0.8 4.9 hypothetical protein compare
MPMX19_06585 +0.8 7.2 hypothetical protein compare
MPMX19_06759 +0.8 2.2 Taurine import ATP-binding protein TauB compare
MPMX19_04531 +0.8 3.2 hypothetical protein compare
MPMX19_05254 +0.7 1.2 Carbon monoxide dehydrogenase small chain compare
MPMX19_06456 +0.7 1.4 hypothetical protein compare
MPMX19_06979 +0.7 2.5 hypothetical protein compare
MPMX19_01864 +0.7 2.2 Regulatory protein AtoC compare
MPMX19_00208 +0.7 1.9 hypothetical protein compare
MPMX19_02746 +0.7 5.4 Peptidyl-lysine N-acetyltransferase Pat compare
MPMX19_06519 +0.7 1.4 HTH-type transcriptional repressor NagR compare
MPMX19_01494 +0.7 4.8 Flagellar P-ring protein compare
MPMX19_06193 +0.7 2.1 Flagellar hook-basal body complex protein FliE compare
MPMX19_00725 +0.7 4.0 Transcriptional regulatory protein ros compare
MPMX19_01401 +0.7 2.1 Ubiquinone biosynthesis accessory factor UbiK compare
MPMX19_01283 +0.7 2.4 hypothetical protein compare
MPMX19_04682 +0.7 1.5 hypothetical protein compare
MPMX19_02811 +0.7 2.9 Long-chain-alcohol dehydrogenase 1 compare
MPMX19_01445 +0.7 2.6 hypothetical protein compare
MPMX19_06272 +0.7 1.3 hypothetical protein compare
MPMX19_05430 +0.7 2.1 HTH-type transcriptional regulator DmlR compare
MPMX19_02531 +0.7 1.8 hypothetical protein compare
MPMX19_05688 +0.7 4.7 Sensor histidine kinase RcsC compare
MPMX19_04204 +0.7 5.0 D-alanine--D-alanyl carrier protein ligase compare
MPMX19_05581 +0.7 1.7 hypothetical protein compare
MPMX19_04624 +0.7 4.3 hypothetical protein compare
MPMX19_00046 +0.7 1.8 hypothetical protein compare
MPMX19_03123 +0.7 1.4 Citrate lyase acyl carrier protein compare
MPMX19_05686 +0.7 2.6 Chemotaxis protein CheY compare
MPMX19_05679 +0.6 4.9 Flagellum-specific ATP synthase compare
MPMX19_00362 +0.6 2.6 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_05678 +0.6 4.5 hypothetical protein compare
MPMX19_01486 +0.6 4.4 Flagellar L-ring protein compare
MPMX19_02039 +0.6 3.1 hypothetical protein compare
MPMX19_01481 +0.6 5.0 Flagellar motor switch protein FliM compare
MPMX19_04209 +0.6 5.5 Lipopolysaccharide assembly protein B compare
MPMX19_06544 +0.6 5.3 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
MPMX19_04276 +0.6 2.3 hypothetical protein compare
MPMX19_01119 +0.6 2.6 hypothetical protein compare
MPMX19_00049 +0.6 2.9 hypothetical protein compare
MPMX19_02937 +0.6 1.6 hypothetical protein compare
MPMX19_04622 +0.6 4.8 hypothetical protein compare
MPMX19_06584 +0.6 5.8 Asparagine synthetase [glutamine-hydrolyzing] 1 compare
MPMX19_04085 +0.6 2.4 hypothetical protein compare
MPMX19_06545 +0.6 5.6 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
MPMX19_04199 +0.6 4.4 Pseudaminic acid synthase compare
MPMX19_06379 +0.6 2.1 hypothetical protein compare
MPMX19_01394 +0.6 1.0 hypothetical protein compare
MPMX19_04985 +0.6 0.8 HTH-type transcriptional regulator DmlR compare
MPMX19_04089 +0.6 5.0 Flagellar biosynthesis protein FlhA compare
MPMX19_00852 +0.6 1.6 hypothetical protein compare
MPMX19_03939 +0.6 2.1 Enoyl-CoA-hydratase compare
MPMX19_04738 +0.6 1.6 hypothetical protein compare
MPMX19_03073 +0.6 1.9 hypothetical protein compare
MPMX19_04267 +0.6 2.1 hypothetical protein compare
MPMX19_05621 +0.6 3.1 ABC transporter ATP-binding protein NatA compare
MPMX19_02444 +0.6 2.4 hypothetical protein compare
MPMX19_01918 +0.5 0.8 tRNA-Ala compare
MPMX19_00294 +0.5 2.7 Adaptive-response sensory-kinase SasA compare
MPMX19_03822 +0.5 1.5 Sulfur carrier protein FdhD compare
MPMX19_04224 +0.5 5.1 hypothetical protein compare
MPMX19_04733 +0.5 3.1 hypothetical protein compare
MPMX19_04968 +0.5 1.9 hypothetical protein compare
MPMX19_05162 +0.5 2.2 Ferrous-iron efflux pump FieF compare
MPMX19_02275 +0.5 1.7 hypothetical protein compare
MPMX19_01485 +0.5 4.1 hypothetical protein compare
MPMX19_00134 +0.5 2.0 hypothetical protein compare
MPMX19_00864 +0.5 2.3 Flagellar hook-basal body complex protein FliE compare
MPMX19_00854 +0.5 4.8 hypothetical protein compare
MPMX19_01951 +0.5 4.2 Chemotaxis protein methyltransferase compare
MPMX19_01484 +0.5 3.3 Flagellar basal-body rod protein FlgG compare
MPMX19_04893 +0.5 2.0 hypothetical protein compare
MPMX19_06581 +0.5 4.3 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 compare
MPMX19_06488 +0.5 1.0 Taurine-binding periplasmic protein compare
MPMX19_02668 +0.5 3.8 RNA polymerase sigma-54 factor 2 compare
MPMX19_05207 +0.5 1.1 Hemolysin secretion protein D, plasmid compare
MPMX19_01618 +0.5 4.1 hypothetical protein compare
MPMX19_06577 +0.5 4.2 hypothetical protein compare
MPMX19_03710 +0.5 2.1 Glycine cleavage system transcriptional activator compare
MPMX19_02313 +0.5 3.7 Oxygen-independent coproporphyrinogen III oxidase compare
MPMX19_02382 +0.5 2.7 hypothetical protein compare
MPMX19_06535 +0.5 1.6 hypothetical protein compare
MPMX19_01358 +0.5 1.6 Electron transfer flavoprotein subunit alpha compare
MPMX19_03976 +0.5 2.5 hypothetical protein compare
MPMX19_00311 +0.5 4.6 hypothetical protein compare
MPMX19_01645 +0.5 1.5 HTH-type transcriptional regulator GltC compare
MPMX19_06211 +0.5 1.4 tRNA-Ala compare
MPMX19_05505 +0.5 1.0 Leucine-responsive regulatory protein compare
MPMX19_00956 +0.5 2.2 hypothetical protein compare
MPMX19_02402 +0.5 0.9 hypothetical protein compare
MPMX19_06253 +0.5 1.3 hypothetical protein compare
MPMX19_01605 +0.5 3.7 Chemotaxis protein CheY compare
MPMX19_04212 +0.5 4.3 Photosystem I assembly protein Ycf3 compare
MPMX19_04838 +0.5 2.8 Heme oxygenase (staphylobilin-producing) compare
MPMX19_01128 +0.5 2.9 hypothetical protein compare
MPMX19_06648 +0.5 2.7 hypothetical protein compare
MPMX19_02532 +0.5 0.9 Cytochrome c-type biogenesis protein CcmE compare
MPMX19_04635 +0.5 2.3 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_00263 +0.5 1.2 hypothetical protein compare
MPMX19_01717 +0.5 2.3 Pyrophosphatase PpaX compare
MPMX19_01949 +0.5 4.3 Chemotaxis protein CheW compare
MPMX19_02674 +0.5 1.3 NADH:quinone reductase compare
MPMX19_04271 +0.5 1.3 Response regulator rcp1 compare
MPMX19_02565 +0.5 4.5 hypothetical protein compare
MPMX19_04633 +0.5 2.0 hypothetical protein compare
MPMX19_03262 +0.5 1.6 putative HTH-type transcriptional repressor ExuR compare
MPMX19_03281 +0.5 1.4 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_04447 +0.5 2.2 hypothetical protein compare
MPMX19_02842 +0.5 2.8 HTH-type transcriptional repressor RspR compare
MPMX19_03618 +0.5 2.9 hypothetical protein compare
MPMX19_04579 +0.5 1.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX19_05068 +0.5 1.7 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA compare
MPMX19_02733 +0.5 2.5 Regulatory protein LuxO compare
MPMX19_01926 +0.5 3.0 Small heat shock protein IbpA compare
MPMX19_06857 +0.5 2.6 Monomeric sarcosine oxidase compare
MPMX19_00879 +0.5 2.5 hypothetical protein compare
MPMX19_01954 +0.5 2.6 hypothetical protein compare
MPMX19_05152 +0.4 1.5 Phosphonoacetaldehyde hydrolase compare
MPMX19_01948 +0.4 3.7 Chemotaxis protein CheA compare
MPMX19_01947 +0.4 1.7 Chemotaxis protein CheY compare
MPMX19_04258 +0.4 2.0 hypothetical protein compare
MPMX19_04133 +0.4 3.1 Transcriptional regulatory protein tctD compare
MPMX19_00423 +0.4 2.0 (E)-2-((N-methylformamido)methylene)succinate hydrolase compare
MPMX19_04986 +0.4 1.7 hypothetical protein compare
MPMX19_05585 +0.4 3.0 hypothetical protein compare
MPMX19_04223 +0.4 3.8 hypothetical protein compare
MPMX19_04551 +0.4 1.0 HTH-type transcriptional repressor RspR compare
MPMX19_03637 +0.4 2.5 Nopaline-binding periplasmic protein compare
MPMX19_04362 +0.4 1.3 Cytidine deaminase compare
MPMX19_04222 +0.4 3.8 hypothetical protein compare
MPMX19_00680 +0.4 1.2 Elongation factor P--(R)-beta-lysine ligase compare
MPMX19_02987 +0.4 1.1 hypothetical protein compare
MPMX19_01178 +0.4 3.9 hypothetical protein compare
MPMX19_01701 +0.4 3.0 hypothetical protein compare
MPMX19_00577 +0.4 2.2 Ribosomal RNA small subunit methyltransferase E compare
MPMX19_01217 +0.4 1.5 Ribosomal RNA small subunit methyltransferase C compare
MPMX19_01508 +0.4 1.6 hypothetical protein compare
MPMX19_00116 +0.4 2.2 Large-conductance mechanosensitive channel compare
MPMX19_06582 +0.4 3.8 hypothetical protein compare
MPMX19_04200 +0.4 2.9 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase compare
MPMX19_00417 +0.4 2.1 hypothetical protein compare
MPMX19_02109 +0.4 1.7 hypothetical protein compare
MPMX19_06734 +0.4 3.9 Alginate biosynthesis protein AlgA compare
MPMX19_05454 +0.4 1.2 hypothetical protein compare
MPMX19_00190 +0.4 1.4 hypothetical protein compare
MPMX19_04877 +0.4 2.6 hypothetical protein compare
MPMX19_00544 +0.4 1.1 hypothetical protein compare
MPMX19_05551 +0.4 1.5 Chemotaxis protein CheY compare
MPMX19_03109 +0.4 1.6 hypothetical protein compare
MPMX19_03050 +0.4 1.5 hypothetical protein compare
MPMX19_00716 +0.4 2.5 Hydrogenase maturation factor HypD compare
MPMX19_05195 +0.4 1.8 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_00475 +0.4 1.1 hypothetical protein compare
MPMX19_01344 +0.4 2.5 hypothetical protein compare
MPMX19_03039 +0.4 1.1 Cyclic AMP receptor protein compare
MPMX19_01483 +0.4 3.3 Flagellar basal-body rod protein FlgG compare
MPMX19_03112 +0.4 2.4 Ribonuclease BN compare
MPMX19_04707 +0.4 1.9 hypothetical protein compare
MPMX19_05202 +0.4 1.7 Tryptophan synthase beta chain compare
MPMX19_03866 +0.4 1.0 Ribose import permease protein RbsC compare
MPMX19_06099 +0.4 3.4 hypothetical protein compare
MPMX19_00730 +0.4 2.5 hypothetical protein compare
MPMX19_03803 +0.4 1.2 hypothetical protein compare
MPMX19_06481 +0.4 2.1 Thiosulfate sulfurtransferase GlpE compare
MPMX19_05022 +0.4 2.4 hypothetical protein compare
MPMX19_04680 +0.4 1.2 Inner membrane ABC transporter permease protein YdcV compare
MPMX19_04052 +0.4 2.9 putative sugar-binding periplasmic protein compare
MPMX19_04973 +0.4 2.1 hypothetical protein compare
MPMX19_06498 +0.4 1.4 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_04158 +0.4 2.2 hypothetical protein compare
MPMX19_05011 +0.4 2.0 tRNA (cytidine(34)-2'-O)-methyltransferase compare
MPMX19_02742 +0.4 1.0 hypothetical protein compare
MPMX19_02181 +0.4 1.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm; ambient oxygen experiments