Experiment set1S69 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; ambient oxygen

200 most important genes:

  gene name fitness t score description  
MPMX19_02980 -3.0 -3.4 Hydrogen cyanide synthase subunit HcnA compare
MPMX19_00020 -1.8 -2.3 hypothetical protein compare
MPMX19_03694 -1.8 -2.3 hypothetical protein compare
MPMX19_03906 -1.7 -11.4 Pca regulon regulatory protein compare
MPMX19_00126 -1.6 -3.2 hypothetical protein compare
MPMX19_04948 -1.6 -2.6 HTH-type transcriptional regulator GltR compare
MPMX19_02267 -1.5 -1.8 hypothetical protein compare
MPMX19_00128 -1.5 -10.2 hypothetical protein compare
MPMX19_00530 -1.5 -3.5 Orotate phosphoribosyltransferase compare
MPMX19_05825 -1.5 -3.2 hypothetical protein compare
MPMX19_00705 -1.4 -3.1 Cell division coordinator CpoB compare
MPMX19_06180 -1.3 -2.8 Sensor histidine kinase RegB compare
MPMX19_04010 -1.3 -2.6 Isoaspartyl peptidase compare
MPMX19_04954 -1.2 -3.3 Putative hydro-lyase compare
MPMX19_04171 -1.2 -2.3 16S ribosomal RNA compare
MPMX19_01054 -1.1 -4.6 Aspartate carbamoyltransferase compare
MPMX19_02303 -1.1 -2.4 hypothetical protein compare
MPMX19_02136 -1.1 -1.3 Phage shock protein A compare
MPMX19_00131 -1.1 -2.6 hypothetical protein compare
MPMX19_04863 -1.1 -2.1 Transcriptional regulatory protein LnrK compare
MPMX19_02268 -1.1 -3.0 hypothetical protein compare
MPMX19_04898 -1.1 -2.9 Transcriptional regulatory protein LnrK compare
MPMX19_05747 -1.1 -2.6 Transcriptional regulatory protein DegU compare
MPMX19_01613 -1.1 -2.0 hypothetical protein compare
MPMX19_06426 -1.1 -3.4 hypothetical protein compare
MPMX19_06193 -1.0 -2.0 Flagellar hook-basal body complex protein FliE compare
MPMX19_03276 -1.0 -2.5 hypothetical protein compare
MPMX19_00304 -1.0 -2.4 Phosphatidylcholine synthase compare
MPMX19_02235 -1.0 -2.9 tRNA-Ala compare
MPMX19_05044 -1.0 -1.9 hypothetical protein compare
MPMX19_03693 -1.0 -2.8 hypothetical protein compare
MPMX19_02531 -1.0 -1.9 hypothetical protein compare
MPMX19_05143 -1.0 -0.9 hypothetical protein compare
MPMX19_01297 -1.0 -1.8 hypothetical protein compare
MPMX19_02951 -1.0 -1.5 Deoxyribose-phosphate aldolase 1 compare
MPMX19_00181 -1.0 -3.2 hypothetical protein compare
MPMX19_04869 -1.0 -3.4 DNA polymerase I compare
MPMX19_01585 -1.0 -2.4 Zinc uptake regulation protein compare
MPMX19_00841 -1.0 -1.5 Holo-[acyl-carrier-protein] synthase compare
MPMX19_01703 -0.9 -1.4 hypothetical protein compare
MPMX19_02177 -0.9 -3.0 Succinylornithine transaminase/acetylornithine aminotransferase compare
MPMX19_05505 -0.9 -2.3 Leucine-responsive regulatory protein compare
MPMX19_02737 -0.9 -3.9 Tryptophan synthase alpha chain compare
MPMX19_05252 -0.9 -1.7 Carbon monoxide dehydrogenase medium chain compare
MPMX19_03871 -0.9 -1.6 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_00976 -0.9 -1.9 ATP-dependent RNA helicase RhlE compare
MPMX19_01883 -0.9 -4.4 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_03575 -0.9 -2.6 HTH-type transcriptional regulator NimR compare
MPMX19_01014 -0.9 -3.1 Indole-3-glycerol phosphate synthase compare
MPMX19_06230 -0.9 -1.6 hypothetical protein compare
MPMX19_01053 -0.9 -2.7 Dihydroorotase compare
MPMX19_02527 -0.9 -2.9 hypothetical protein compare
MPMX19_00472 -0.9 -1.8 Protein HesB, heterocyst compare
MPMX19_03635 -0.9 -1.1 DNA-binding transcriptional activator DecR compare
MPMX19_00748 -0.8 -2.9 Organic hydroperoxide resistance transcriptional regulator compare
MPMX19_00319 -0.8 -1.2 hypothetical protein compare
MPMX19_03141 -0.8 -1.3 hypothetical protein compare
MPMX19_03193 -0.8 -2.7 hypothetical protein compare
MPMX19_05872 -0.8 -2.1 Redox-sensitive transcriptional activator SoxR compare
MPMX19_02388 -0.8 -3.1 hypothetical protein compare
MPMX19_00694 -0.8 -1.9 2',3'-cyclic-nucleotide 2'-phosphodiesterase compare
MPMX19_02702 -0.8 -2.5 hypothetical protein compare
MPMX19_00094 -0.8 -1.3 hypothetical protein compare
MPMX19_06746 -0.8 -1.5 Chemotaxis protein CheW compare
MPMX19_00006 -0.8 -3.1 Heat shock protein 15 compare
MPMX19_00766 -0.8 -1.2 hypothetical protein compare
MPMX19_00574 -0.8 -2.6 hypothetical protein compare
MPMX19_03198 -0.8 -2.0 hypothetical protein compare
MPMX19_05438 -0.8 -1.0 hypothetical protein compare
MPMX19_03425 -0.8 -1.7 hypothetical protein compare
MPMX19_02466 -0.8 -1.5 Octopine permease ATP-binding protein P compare
MPMX19_01376 -0.8 -1.7 hypothetical protein compare
MPMX19_00366 -0.8 -2.0 hypothetical protein compare
MPMX19_02979 -0.7 -2.8 Hydrogen cyanide synthase subunit HcnB compare
MPMX19_03213 -0.7 -2.0 hypothetical protein compare
MPMX19_01560 -0.7 -2.1 3'-5' exonuclease DinG compare
MPMX19_00478 -0.7 -1.1 putative protein RP812 compare
MPMX19_00025 -0.7 -1.1 hypothetical protein compare
MPMX19_01321 -0.7 -2.5 tRNA-Cys compare
MPMX19_05119 -0.7 -5.4 Glucose-6-phosphate 1-dehydrogenase compare
MPMX19_05915 -0.7 -1.8 Flagellar M-ring protein compare
MPMX19_01323 -0.7 -2.2 hypothetical protein compare
MPMX19_03784 -0.7 -2.0 hypothetical protein compare
MPMX19_01426 -0.7 -1.3 hypothetical protein compare
MPMX19_06345 -0.7 -2.4 Pyruvate synthase subunit PorC compare
MPMX19_01510 -0.7 -2.6 hypothetical protein compare
MPMX19_04477 -0.7 -2.1 hypothetical protein compare
MPMX19_05100 -0.7 -2.2 hypothetical protein compare
MPMX19_01720 -0.7 -1.8 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB compare
MPMX19_00503 -0.7 -2.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
MPMX19_01718 -0.7 -1.4 Ribosomal large subunit pseudouridine synthase C compare
MPMX19_05727 -0.7 -3.4 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_01884 -0.7 -1.5 Phosphoribosylformylglycinamidine synthase subunit PurQ compare
MPMX19_01654 -0.7 -4.0 HTH-type transcriptional regulator IscR compare
MPMX19_00695 -0.7 -1.8 putative transcriptional regulatory protein compare
MPMX19_04429 -0.7 -2.3 N-acetylmuramoyl-L-alanine amidase AmiA compare
MPMX19_03531 -0.7 -2.3 PCP degradation transcriptional activation protein compare
MPMX19_02105 -0.7 -1.5 hypothetical protein compare
MPMX19_06202 -0.6 -1.0 hypothetical protein compare
MPMX19_05224 -0.6 -2.1 hypothetical protein compare
MPMX19_02553 -0.6 -2.9 Protein-export protein SecB compare
MPMX19_05818 -0.6 -1.2 hypothetical protein compare
MPMX19_06004 -0.6 -1.2 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_01084 -0.6 -2.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX19_02424 -0.6 -1.5 hypothetical protein compare
MPMX19_03081 -0.6 -1.8 Protein FecR compare
MPMX19_04392 -0.6 -1.5 Bifunctional methionine biosynthesis protein MetXA/MetW compare
MPMX19_00790 -0.6 -1.1 hypothetical protein compare
MPMX19_01395 -0.6 -1.2 hypothetical protein compare
MPMX19_00608 -0.6 -0.7 hypothetical protein compare
MPMX19_04115 -0.6 -1.3 Sensor histidine kinase RcsC compare
MPMX19_04430 -0.6 -2.2 hypothetical protein compare
MPMX19_03727 -0.6 -2.8 hypothetical protein compare
MPMX19_01597 -0.6 -1.4 23S rRNA (uridine(2479)-2'-O)-methyltransferase compare
MPMX19_04822 -0.6 -2.3 Ornithine lipid N-methyltransferase compare
MPMX19_03870 -0.6 -1.4 L-aspartate dehydrogenase compare
MPMX19_05473 -0.6 -1.9 hypothetical protein compare
MPMX19_03005 -0.6 -1.6 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha compare
MPMX19_03556 -0.6 -1.9 Putative isomerase YbhH compare
MPMX19_01822 -0.6 -2.9 2-isopropylmalate synthase compare
MPMX19_00665 -0.6 -1.7 hypothetical protein compare
MPMX19_01777 -0.6 -1.7 2-aminoadipate transaminase compare
MPMX19_00482 -0.6 -2.3 Sensor histidine kinase RcsC compare
MPMX19_03642 -0.6 -1.4 hypothetical protein compare
MPMX19_04042 -0.6 -1.8 hypothetical protein compare
MPMX19_04554 -0.6 -1.9 Response regulator PleD compare
MPMX19_04647 -0.6 -1.6 hypothetical protein compare
MPMX19_00432 -0.6 -2.1 hypothetical protein compare
MPMX19_00149 -0.6 -2.6 hypothetical protein compare
MPMX19_04476 -0.6 -3.1 hypothetical protein compare
MPMX19_03609 -0.6 -1.5 HTH-type transcriptional repressor NagR compare
MPMX19_01304 -0.6 -3.9 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_06419 -0.6 -1.5 IS110 family transposase ISHne3 compare
MPMX19_04280 -0.6 -1.5 hypothetical protein compare
MPMX19_04963 -0.6 -1.2 Cysteine desulfurase IscS compare
MPMX19_01015 -0.6 -2.2 Anthranilate phosphoribosyltransferase compare
MPMX19_01247 -0.6 -1.0 Transcriptional regulatory protein DegU compare
MPMX19_01541 -0.6 -1.9 hypothetical protein compare
MPMX19_02646 -0.6 -1.3 hypothetical protein compare
MPMX19_06984 -0.6 -1.8 Mesaconyl-C(4)-CoA hydratase compare
MPMX19_00132 -0.6 -1.6 hypothetical protein compare
MPMX19_06911 -0.6 -2.6 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_03646 -0.5 -2.5 Histidinol-phosphate aminotransferase compare
MPMX19_01995 -0.5 -2.1 hypothetical protein compare
MPMX19_04104 -0.5 -3.0 hypothetical protein compare
MPMX19_00329 -0.5 -1.9 Putative membrane protein insertion efficiency factor compare
MPMX19_05464 -0.5 -3.3 hypothetical protein compare
MPMX19_05483 -0.5 -2.0 hypothetical protein compare
MPMX19_03612 -0.5 -1.8 hypothetical protein compare
MPMX19_03526 -0.5 -1.8 Quinate/shikimate dehydrogenase (NAD(+)) compare
MPMX19_02938 -0.5 -1.9 hypothetical protein compare
MPMX19_03586 -0.5 -1.6 HTH-type transcriptional repressor ComR compare
MPMX19_01329 -0.5 -2.0 Alanine--tRNA ligase compare
MPMX19_03890 -0.5 -1.8 Riboflavin transport system permease protein RibX compare
MPMX19_06236 -0.5 -1.4 hypothetical protein compare
MPMX19_01101 -0.5 -1.0 hypothetical protein compare
MPMX19_03252 -0.5 -1.9 hypothetical protein compare
MPMX19_00044 -0.5 -1.2 hypothetical protein compare
MPMX19_06762 -0.5 -0.8 Peptide deformylase compare
MPMX19_04128 -0.5 -2.2 Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA compare
MPMX19_02499 -0.5 -1.9 hypothetical protein compare
MPMX19_01866 -0.5 -1.5 Sulfur carrier protein CysO compare
MPMX19_04451 -0.5 -2.0 hypothetical protein compare
MPMX19_02618 -0.5 -0.9 Transcriptional regulatory protein BaeR compare
MPMX19_04699 -0.5 -1.4 hypothetical protein compare
MPMX19_02748 -0.5 -2.3 L-lactate dehydrogenase compare
MPMX19_03196 -0.5 -1.7 hypothetical protein compare
MPMX19_00504 -0.5 -2.1 ATP-dependent Clp protease adapter protein ClpS compare
MPMX19_06321 -0.5 -2.0 hypothetical protein compare
MPMX19_01601 -0.5 -2.5 DNA repair protein RecN compare
MPMX19_02981 -0.5 -2.2 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_06102 -0.5 -1.5 Membrane-bound lytic murein transglycosylase C compare
MPMX19_01912 -0.5 -1.4 Acetyl-CoA acetyltransferase compare
MPMX19_03219 -0.5 -2.1 putative ABC transporter ATP-binding protein YheS compare
MPMX19_06610 -0.5 -0.6 hypothetical protein compare
MPMX19_04950 -0.5 -2.3 High-affinity branched-chain amino acid transport system permease protein LivH compare
MPMX19_03295 -0.5 -1.3 HTH-type transcriptional regulator McbR compare
MPMX19_03608 -0.5 -2.0 N-acetylmuramic acid 6-phosphate etherase compare
MPMX19_02120 -0.5 -1.2 hypothetical protein compare
MPMX19_03182 -0.5 -1.6 hypothetical protein compare
MPMX19_02450 -0.5 -2.5 hypothetical protein compare
MPMX19_00133 -0.5 -2.9 hypothetical protein compare
MPMX19_02642 -0.5 -2.4 hypothetical protein compare
MPMX19_02711 -0.5 -2.1 Tyrosine recombinase XerC compare
MPMX19_05358 -0.5 -1.0 hypothetical protein compare
MPMX19_00906 -0.5 -3.8 Amidophosphoribosyltransferase compare
MPMX19_04903 -0.5 -1.8 hypothetical protein compare
MPMX19_00129 -0.5 -0.7 hypothetical protein compare
MPMX19_02607 -0.5 -1.7 hypothetical protein compare
MPMX19_05021 -0.5 -2.4 Methylmalonyl-CoA mutase compare
MPMX19_03722 -0.5 -0.9 hypothetical protein compare
MPMX19_05982 -0.5 -1.5 hypothetical protein compare
MPMX19_02538 -0.5 -1.1 hypothetical protein compare
MPMX19_02657 -0.5 -4.3 Glutamate synthase [NADPH] large chain compare
MPMX19_04571 -0.5 -1.4 hypothetical protein compare
MPMX19_05911 -0.5 -1.6 hypothetical protein compare
MPMX19_06546 -0.5 -1.1 hypothetical protein compare
MPMX19_00953 -0.5 -2.2 hypothetical protein compare
MPMX19_06508 -0.5 -1.7 Nitrilotriacetate monooxygenase component A compare
MPMX19_02334 -0.5 -1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm; ambient oxygen experiments