Experiment set1S68 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; ambient oxygen

200 most important genes:

  gene name fitness t score description  
MPMX19_01718 -2.3 -3.1 Ribosomal large subunit pseudouridine synthase C compare
MPMX19_03752 -2.3 -3.0 hypothetical protein compare
MPMX19_00530 -2.2 -4.2 Orotate phosphoribosyltransferase compare
MPMX19_01796 -2.1 -2.8 hypothetical protein compare
MPMX19_01714 -1.8 -2.1 tRNA-modifying protein YgfZ compare
MPMX19_01394 -1.8 -1.7 hypothetical protein compare
MPMX19_00705 -1.7 -3.2 Cell division coordinator CpoB compare
MPMX19_01545 -1.7 -1.1 Lon protease compare
MPMX19_06179 -1.7 -2.2 putative SURF1-like protein compare
MPMX19_00122 -1.6 -3.2 hypothetical protein compare
MPMX19_05834 -1.6 -2.3 Hydrogen peroxide-inducible genes activator compare
MPMX19_06985 -1.5 -1.9 L-malyl-CoA/beta-methylmalyl-CoA lyase compare
MPMX19_02664 -1.5 -1.7 Arabinose 5-phosphate isomerase KdsD compare
MPMX19_06819 -1.5 -2.8 hypothetical protein compare
MPMX19_05044 -1.4 -2.3 hypothetical protein compare
MPMX19_03906 -1.4 -9.5 Pca regulon regulatory protein compare
MPMX19_02980 -1.3 -1.8 Hydrogen cyanide synthase subunit HcnA compare
MPMX19_00266 -1.3 -2.3 hypothetical protein compare
MPMX19_00128 -1.3 -8.6 hypothetical protein compare
MPMX19_01249 -1.3 -1.5 Periplasmic serine endoprotease DegP compare
MPMX19_02618 -1.3 -2.2 Transcriptional regulatory protein BaeR compare
MPMX19_06327 -1.2 -1.8 hypothetical protein compare
MPMX19_01597 -1.2 -1.5 23S rRNA (uridine(2479)-2'-O)-methyltransferase compare
MPMX19_05442 -1.2 -2.5 Ribosomal large subunit pseudouridine synthase D compare
MPMX19_04210 -1.2 -1.8 hypothetical protein compare
MPMX19_01560 -1.2 -2.6 3'-5' exonuclease DinG compare
MPMX19_04948 -1.2 -1.9 HTH-type transcriptional regulator GltR compare
MPMX19_03197 -1.2 -2.6 hypothetical protein compare
MPMX19_05143 -1.2 -1.4 hypothetical protein compare
MPMX19_04522 -1.1 -2.2 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_00236 -1.1 -2.7 HTH-type transcriptional regulator IscR compare
MPMX19_00126 -1.1 -2.6 hypothetical protein compare
MPMX19_02267 -1.1 -1.5 hypothetical protein compare
MPMX19_02378 -1.1 -2.3 hypothetical protein compare
MPMX19_01084 -1.1 -3.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX19_01883 -1.1 -4.8 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_06460 -1.1 -2.3 DNA-invertase hin compare
MPMX19_06419 -1.1 -2.3 IS110 family transposase ISHne3 compare
MPMX19_03194 -1.1 -2.0 hypothetical protein compare
MPMX19_01247 -1.1 -2.0 Transcriptional regulatory protein DegU compare
MPMX19_01059 -1.1 -1.1 hypothetical protein compare
MPMX19_04701 -1.1 -1.2 Transcriptional regulatory protein FixJ compare
MPMX19_01054 -1.0 -3.8 Aspartate carbamoyltransferase compare
MPMX19_00297 -1.0 -1.5 4-carboxy-4-hydroxy-2-oxoadipate aldolase compare
MPMX19_00794 -1.0 -2.6 Transcriptional activator protein CopR compare
MPMX19_03586 -1.0 -2.4 HTH-type transcriptional repressor ComR compare
MPMX19_05224 -1.0 -2.6 hypothetical protein compare
MPMX19_04115 -1.0 -1.5 Sensor histidine kinase RcsC compare
MPMX19_06508 -1.0 -3.0 Nitrilotriacetate monooxygenase component A compare
MPMX19_03141 -1.0 -2.0 hypothetical protein compare
MPMX19_05824 -1.0 -2.8 hypothetical protein compare
MPMX19_02981 -1.0 -3.8 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_03851 -1.0 -3.2 hypothetical protein compare
MPMX19_00182 -1.0 -1.5 hypothetical protein compare
MPMX19_05217 -1.0 -1.2 Flagellin compare
MPMX19_02544 -1.0 -2.5 hypothetical protein compare
MPMX19_03948 -0.9 -1.1 tRNA-Ser compare
MPMX19_00675 -0.9 -1.9 Peptidoglycan-associated lipoprotein compare
MPMX19_06381 -0.9 -1.4 putative manganese efflux pump MntP compare
MPMX19_01395 -0.9 -1.8 hypothetical protein compare
MPMX19_01822 -0.9 -3.8 2-isopropylmalate synthase compare
MPMX19_05387 -0.9 -1.6 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
MPMX19_06878 -0.9 -2.3 Putative amino-acid ABC transporter-binding protein YhdW compare
MPMX19_00830 -0.9 -3.7 Toxin FitB compare
MPMX19_01729 -0.9 -1.4 Ethylmalonyl-CoA/methylmalonyl-CoA epimerase compare
MPMX19_02978 -0.9 -3.2 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_00846 -0.9 -1.2 hypothetical protein compare
MPMX19_01630 -0.8 -2.6 Phosphoribosylamine--glycine ligase compare
MPMX19_01330 -0.8 -1.6 3-mercaptopyruvate sulfurtransferase compare
MPMX19_06808 -0.8 -1.2 HTH-type transcriptional regulator DmlR compare
MPMX19_00066 -0.8 -0.8 hypothetical protein compare
MPMX19_04392 -0.8 -1.7 Bifunctional methionine biosynthesis protein MetXA/MetW compare
MPMX19_03722 -0.8 -1.5 hypothetical protein compare
MPMX19_02180 -0.8 -2.5 hypothetical protein compare
MPMX19_00258 -0.8 -1.9 Protein ImuB compare
MPMX19_01884 -0.8 -1.8 Phosphoribosylformylglycinamidine synthase subunit PurQ compare
MPMX19_03915 -0.8 -1.7 hypothetical protein compare
MPMX19_00319 -0.8 -1.0 hypothetical protein compare
MPMX19_03756 -0.8 -1.6 hypothetical protein compare
MPMX19_01777 -0.8 -1.7 2-aminoadipate transaminase compare
MPMX19_00572 -0.8 -2.5 Type-4 uracil-DNA glycosylase compare
MPMX19_03499 -0.8 -2.1 Formate dehydrogenase, cytochrome b556(fdo) subunit compare
MPMX19_04647 -0.8 -1.6 hypothetical protein compare
MPMX19_04458 -0.8 -2.2 2-hydroxy-3-oxopropionate reductase compare
MPMX19_01277 -0.8 -3.8 hypothetical protein compare
MPMX19_02951 -0.8 -1.4 Deoxyribose-phosphate aldolase 1 compare
MPMX19_00191 -0.8 -2.2 hypothetical protein compare
MPMX19_06456 -0.8 -1.2 hypothetical protein compare
MPMX19_06723 -0.8 -2.4 hypothetical protein compare
MPMX19_03557 -0.8 -2.2 HTH-type transcriptional regulator CynR compare
MPMX19_03936 -0.8 -3.1 Acetyl-CoA acetyltransferase compare
MPMX19_02613 -0.8 -1.1 hypothetical protein compare
MPMX19_00089 -0.8 -1.5 hypothetical protein compare
MPMX19_00606 -0.8 -3.4 3-isopropylmalate dehydratase small subunit 1 compare
MPMX19_06414 -0.8 -2.4 hypothetical protein compare
MPMX19_01998 -0.8 -3.0 3-isopropylmalate dehydratase large subunit compare
MPMX19_02855 -0.8 -2.8 hypothetical protein compare
MPMX19_02815 -0.7 -1.5 2-keto-4-pentenoate hydratase compare
MPMX19_00847 -0.7 -3.4 Ribosomal RNA large subunit methyltransferase M compare
MPMX19_03165 -0.7 -1.1 hypothetical protein compare
MPMX19_01585 -0.7 -1.8 Zinc uptake regulation protein compare
MPMX19_01076 -0.7 -1.2 Molybdopterin synthase catalytic subunit compare
MPMX19_06156 -0.7 -1.8 hypothetical protein compare
MPMX19_01304 -0.7 -4.7 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_01708 -0.7 -1.7 hypothetical protein compare
MPMX19_06001 -0.7 -2.5 hypothetical protein compare
MPMX19_02207 -0.7 -1.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
MPMX19_01047 -0.7 -2.3 Transcriptional regulatory protein ros compare
MPMX19_05352 -0.7 -1.5 putative cysteine-rich protein YhjQ compare
MPMX19_01088 -0.7 -2.5 hypothetical protein compare
MPMX19_02700 -0.7 -1.8 hypothetical protein compare
MPMX19_01365 -0.7 -1.3 hypothetical protein compare
MPMX19_02320 -0.7 -1.1 HTH-type transcriptional regulator GltR compare
MPMX19_00148 -0.7 -1.7 hypothetical protein compare
MPMX19_04265 -0.7 -1.2 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_06448 -0.7 -2.4 hypothetical protein compare
MPMX19_01487 -0.7 -1.6 hypothetical protein compare
MPMX19_02303 -0.7 -1.5 hypothetical protein compare
MPMX19_03420 -0.7 -1.6 hypothetical protein compare
MPMX19_01133 -0.7 -3.3 HTH-type transcriptional regulator PgrR compare
MPMX19_01297 -0.7 -1.2 hypothetical protein compare
MPMX19_00142 -0.7 -1.2 hypothetical protein compare
MPMX19_02268 -0.7 -2.0 hypothetical protein compare
MPMX19_04743 -0.7 -1.9 Formyltransferase/hydrolase complex subunit D compare
MPMX19_03599 -0.7 -2.8 2-amino-5-chloromuconic acid deaminase compare
MPMX19_03184 -0.7 -2.3 hypothetical protein compare
MPMX19_05733 -0.7 -1.6 Biopolymer transport protein ExbD compare
MPMX19_05333 -0.7 -1.4 Thymidine phosphorylase compare
MPMX19_01053 -0.7 -2.1 Dihydroorotase compare
MPMX19_06907 -0.7 -1.9 L-talarate/galactarate dehydratase compare
MPMX19_03891 -0.7 -1.8 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_06027 -0.7 -1.7 hypothetical protein compare
MPMX19_05070 -0.7 -2.4 hypothetical protein compare
MPMX19_03929 -0.7 -2.1 hypothetical protein compare
MPMX19_06804 -0.7 -0.7 hypothetical protein compare
MPMX19_02397 -0.7 -1.9 hypothetical protein compare
MPMX19_02580 -0.7 -1.2 Acetyltransferase compare
MPMX19_04171 -0.7 -1.3 16S ribosomal RNA compare
MPMX19_00841 -0.7 -1.0 Holo-[acyl-carrier-protein] synthase compare
MPMX19_06102 -0.7 -1.6 Membrane-bound lytic murein transglycosylase C compare
MPMX19_06506 -0.6 -1.5 hypothetical protein compare
MPMX19_00839 -0.6 -0.8 hypothetical protein compare
MPMX19_03552 -0.6 -1.4 hypothetical protein compare
MPMX19_03613 -0.6 -1.8 N-acetylglucosamine-6-phosphate deacetylase compare
MPMX19_04325 -0.6 -2.7 hypothetical protein compare
MPMX19_03862 -0.6 -2.1 hypothetical protein compare
MPMX19_01912 -0.6 -1.5 Acetyl-CoA acetyltransferase compare
MPMX19_02492 -0.6 -1.8 hypothetical protein compare
MPMX19_04348 -0.6 -2.7 hypothetical protein compare
MPMX19_03768 -0.6 -1.2 hypothetical protein compare
MPMX19_04100 -0.6 -1.2 hypothetical protein compare
MPMX19_01780 -0.6 -3.0 Bacteriohemerythrin compare
MPMX19_04512 -0.6 -2.6 C4-dicarboxylate transport transcriptional regulatory protein DctD compare
MPMX19_03939 -0.6 -1.5 Enoyl-CoA-hydratase compare
MPMX19_03101 -0.6 -2.5 hypothetical protein compare
MPMX19_02658 -0.6 -4.5 Glutamate synthase [NADPH] small chain compare
MPMX19_02674 -0.6 -1.1 NADH:quinone reductase compare
MPMX19_03007 -0.6 -2.0 Arabinose import ATP-binding protein AraG compare
MPMX19_01556 -0.6 -3.0 hypothetical protein compare
MPMX19_03369 -0.6 -1.5 hypothetical protein compare
MPMX19_00044 -0.6 -1.5 hypothetical protein compare
MPMX19_02965 -0.6 -2.0 hypothetical protein compare
MPMX19_00304 -0.6 -1.5 Phosphatidylcholine synthase compare
MPMX19_00838 -0.6 -1.3 GTP pyrophosphokinase rsh compare
MPMX19_00748 -0.6 -2.0 Organic hydroperoxide resistance transcriptional regulator compare
MPMX19_02911 -0.6 -1.7 hypothetical protein compare
MPMX19_02553 -0.6 -2.5 Protein-export protein SecB compare
MPMX19_04246 -0.6 -1.4 hypothetical protein compare
MPMX19_00832 -0.6 -2.2 hypothetical protein compare
MPMX19_04677 -0.6 -2.0 Sulfate/thiosulfate import ATP-binding protein CysA compare
MPMX19_02687 -0.6 -2.4 hypothetical protein compare
MPMX19_04299 -0.6 -2.5 hypothetical protein compare
MPMX19_03922 -0.6 -2.3 Transcriptional activator HlyU compare
MPMX19_00795 -0.6 -2.4 Adaptive-response sensory-kinase SasA compare
MPMX19_00904 -0.6 -3.2 DNA repair protein RadA compare
MPMX19_00906 -0.6 -4.2 Amidophosphoribosyltransferase compare
MPMX19_01015 -0.6 -2.2 Anthranilate phosphoribosyltransferase compare
MPMX19_04554 -0.6 -1.8 Response regulator PleD compare
MPMX19_00414 -0.6 -1.2 Pyruvate dehydrogenase complex repressor compare
MPMX19_03523 -0.6 -2.1 hypothetical protein compare
MPMX19_03790 -0.6 -1.1 hypothetical protein compare
MPMX19_04013 -0.6 -1.5 hypothetical protein compare
MPMX19_04559 -0.6 -2.4 hypothetical protein compare
MPMX19_01596 -0.6 -1.9 hypothetical protein compare
MPMX19_04341 -0.6 -1.8 hypothetical protein compare
MPMX19_01987 -0.6 -2.1 Anhydro-N-acetylmuramic acid kinase compare
MPMX19_03775 -0.6 -2.2 hypothetical protein compare
MPMX19_03550 -0.6 -2.1 HTH-type transcriptional regulator DmlR compare
MPMX19_05445 -0.6 -0.9 tRNA-Glu compare
MPMX19_05016 -0.6 -1.0 Sensor histidine kinase RcsC compare
MPMX19_06370 -0.6 -2.6 hypothetical protein compare
MPMX19_05439 -0.6 -2.5 hypothetical protein compare
MPMX19_06983 -0.6 -2.3 putative FAD-linked oxidoreductase compare
MPMX19_01270 -0.6 -1.9 L-threonine ammonia-lyase compare
MPMX19_06134 -0.6 -1.5 hypothetical protein compare
MPMX19_01939 -0.5 -1.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
MPMX19_06180 -0.5 -1.1 Sensor histidine kinase RegB compare
MPMX19_00649 -0.5 -1.9 Phosphoadenosine phosphosulfate reductase compare
MPMX19_03211 -0.5 -2.5 hypothetical protein compare
MPMX19_00031 -0.5 -1.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm; ambient oxygen experiments