Experiment set1S65 for Methylophilus sp. DMC18

Compare to:

Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x

200 most important genes:

  gene name fitness t score description  
GFF2571 -1.8 -3.5 Peptidyl-prolyl cis-trans isomerase cyp18 compare
GFF2748 -1.8 -2.3 Bifunctional PGK/TIM compare
GFF2442 -1.6 -3.0 hypothetical protein compare
GFF687 -1.6 -2.7 hypothetical protein compare
GFF688 -1.6 -3.3 hypothetical protein compare
GFF1302 -1.5 -2.3 Trigger factor compare
GFF1213 -1.5 -3.1 Ribosomal large subunit pseudouridine synthase D compare
GFF1503 -1.5 -2.1 hypothetical protein compare
GFF668 -1.4 -3.5 Coenzyme PQQ synthesis protein B compare
GFF589 -1.4 -3.7 hypothetical protein compare
GFF293 -1.4 -3.3 hypothetical protein compare
GFF1949 -1.4 -3.1 hypothetical protein compare
GFF1727 -1.3 -2.5 hypothetical protein compare
GFF2325 -1.3 -2.9 Crossover junction endodeoxyribonuclease RuvC compare
GFF858 -1.2 -2.8 Thiamine-phosphate synthase compare
GFF1191 -1.2 -3.1 Dual-specificity RNA methyltransferase RlmN compare
GFF192 -1.2 -2.7 hypothetical protein compare
GFF2105 -1.2 -2.3 tRNA modification GTPase MnmE compare
GFF1685 -1.2 -1.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
GFF2657 -1.2 -3.7 hypothetical protein compare
GFF2175 -1.2 -2.5 hypothetical protein compare
GFF2323 -1.1 -2.7 putative cystine transporter YijE compare
GFF1638 -1.1 -2.0 Putative glucose-6-phosphate 1-epimerase compare
GFF489 -1.1 -1.7 Cadmium, cobalt and zinc/H(+)-K(+) antiporter compare
GFF2327 -1.1 -1.1 Holliday junction ATP-dependent DNA helicase RuvB compare
GFF685 -1.1 -3.3 hypothetical protein compare
GFF1378 -1.1 -1.5 hypothetical protein compare
GFF964 -1.1 -3.4 hypothetical protein compare
GFF800 -1.1 -8.0 Sensor histidine kinase RcsC compare
GFF580 -1.0 -4.0 dTDP-glucose 4,6-dehydratase compare
GFF2283 -1.0 -3.0 Beta-barrel assembly-enhancing protease compare
GFF131 -1.0 -4.5 Sulfate transport system permease protein CysT compare
GFF1946 -0.9 -1.5 hypothetical protein compare
GFF835 -0.9 -3.4 Molybdopterin adenylyltransferase compare
GFF2457 -0.9 -1.8 Transcriptional regulator MraZ compare
GFF832 -0.9 -1.5 Sulfur carrier protein TusA compare
GFF1628 -0.9 -3.2 Deoxyuridine 5'-triphosphate nucleotidohydrolase compare
GFF1626 -0.9 -1.3 50S ribosomal protein L33 compare
GFF2578 -0.9 -1.8 putative glycosyltransferase compare
GFF841 -0.8 -2.7 Protein RecA compare
GFF601 -0.8 -2.5 Putative metal chaperone YciC compare
GFF1749 -0.8 -2.3 Cytochrome c biogenesis protein CcsA compare
GFF1535 -0.8 -2.6 Tyrosine recombinase XerC compare
GFF684 -0.8 -3.7 hypothetical protein compare
GFF2310 -0.8 -2.1 Glycine cleavage system H protein compare
GFF88 -0.8 -1.9 Response regulator UvrY compare
GFF620 -0.8 -2.1 Exoribonuclease 2 compare
GFF995 -0.8 -3.7 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme compare
GFF264 -0.7 -4.0 N-acetylmuramate/N-acetylglucosamine kinase compare
GFF1305 -0.7 -1.6 Lon protease compare
GFF464 -0.7 -2.6 hypothetical protein compare
GFF1086 -0.7 -3.3 hypothetical protein compare
GFF132 -0.7 -3.2 Vitamin B12 import ATP-binding protein BtuD compare
GFF807 -0.7 -1.6 Cytochrome subunit of sulfide dehydrogenase compare
GFF842 -0.7 -1.3 Regulatory protein RecX compare
GFF2796 -0.7 -2.4 Carboxymethylenebutenolidase compare
GFF985 -0.7 -1.9 hypothetical protein compare
GFF483 -0.7 -1.4 hypothetical protein compare
GFF1445 -0.6 -3.8 putative xanthine dehydrogenase subunit A compare
GFF2322 -0.6 -1.7 hypothetical protein compare
GFF2524 -0.6 -2.5 hypothetical protein compare
GFF421 -0.6 -1.4 Response regulator PleD compare
GFF130 -0.6 -3.1 Molybdate-binding protein ModA compare
GFF2157 -0.6 -1.1 hypothetical protein compare
GFF1248 -0.6 -2.7 N-acetyl-D-glucosamine kinase compare
GFF2436 -0.6 -3.3 GTP 3',8-cyclase compare
GFF2843 -0.6 -1.2 Diacylglycerol kinase compare
GFF1446 -0.6 -2.7 Purine catabolism protein PucB compare
GFF970 -0.6 -2.7 hypothetical protein compare
GFF49 -0.6 -1.0 hypothetical protein compare
GFF292 -0.6 -1.3 hypothetical protein compare
GFF392 -0.6 -1.1 hypothetical protein compare
GFF749 -0.6 -4.2 Acetaldehyde dehydrogenase 2 compare
GFF2626 -0.6 -1.9 hypothetical protein compare
GFF2638 -0.6 -1.4 hypothetical protein compare
GFF290 -0.6 -1.1 hypothetical protein compare
GFF1987 -0.6 -1.3 hypothetical protein compare
GFF1758 -0.6 -2.0 hypothetical protein compare
GFF1866 -0.5 -0.8 Biopolymer transport protein ExbD compare
GFF1200 -0.5 -1.5 hypothetical protein compare
GFF1050 -0.5 -1.2 15-cis-phytoene synthase compare
GFF639 -0.5 -2.4 Malate:quinone oxidoreductase compare
GFF1262 -0.5 -2.0 hypothetical protein compare
GFF962 -0.5 -2.5 Cadmium-induced protein CadI compare
GFF2296 -0.5 -1.9 hypothetical protein compare
GFF1034 -0.5 -1.4 Molybdopterin synthase sulfur carrier subunit compare
GFF2695 -0.5 -1.1 Outer membrane lipoprotein pcp compare
GFF2334 -0.5 -2.5 Cell division coordinator CpoB compare
GFF1855 -0.5 -1.1 hypothetical protein compare
GFF1035 -0.5 -1.5 hypothetical protein compare
GFF2282 -0.5 -3.0 Cyclic pyranopterin monophosphate synthase compare
GFF1435 -0.5 -1.1 hypothetical protein compare
GFF2809 -0.5 -1.7 hypothetical protein compare
GFF822 -0.5 -2.3 hypothetical protein compare
GFF2259 -0.5 -2.5 Thiopurine S-methyltransferase compare
GFF770 -0.5 -1.5 hypothetical protein compare
GFF2534 -0.5 -1.9 Vitamin B12 import ATP-binding protein BtuD compare
GFF799 -0.5 -1.6 hypothetical protein compare
GFF1201 -0.5 -1.8 hypothetical protein compare
GFF1208 -0.5 -0.9 hypothetical protein compare
GFF765 -0.5 -1.3 Ribosomal RNA small subunit methyltransferase D compare
GFF8 -0.5 -2.1 hypothetical protein compare
GFF916 -0.5 -2.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
GFF1126 -0.5 -0.9 Hypoxanthine-guanine phosphoribosyltransferase compare
GFF1542 -0.5 -1.0 hypothetical protein compare
GFF683 -0.5 -1.6 tRNA dimethylallyltransferase compare
GFF1534 -0.5 -1.3 hypothetical protein compare
GFF896 -0.4 -2.1 Protein YffB compare
GFF298 -0.4 -2.1 hypothetical protein compare
GFF1425 -0.4 -2.5 Adaptive-response sensory-kinase SasA compare
GFF291 -0.4 -0.8 hypothetical protein compare
GFF1244 -0.4 -2.3 1,4-alpha-glucan branching enzyme GlgB compare
GFF678 -0.4 -2.5 hypothetical protein compare
GFF1256 -0.4 -2.0 hypothetical protein compare
GFF680 -0.4 -1.9 hypothetical protein compare
GFF1442 -0.4 -1.9 2-haloacrylate reductase compare
GFF276 -0.4 -1.0 Cold shock-like protein CspA compare
GFF122 -0.4 -2.4 Electron transfer flavoprotein-ubiquinone oxidoreductase compare
GFF91 -0.4 -1.9 hypothetical protein compare
GFF2762 -0.4 -1.7 Maltodextrin phosphorylase compare
GFF1647 -0.4 -2.4 HTH-type transcriptional regulator TtgR compare
GFF2137 -0.4 -1.2 dITP/XTP pyrophosphatase compare
GFF2456 -0.4 -2.4 hypothetical protein compare
GFF690 -0.4 -1.4 hypothetical protein compare
GFF2658 -0.4 -1.5 GTP pyrophosphokinase compare
GFF2434 -0.4 -1.7 Molybdopterin molybdenumtransferase compare
GFF671 -0.4 -1.2 PqqA peptide cyclase compare
GFF1141 -0.4 -1.3 Persistence and stress-resistance toxin PasT compare
GFF1531 -0.4 -2.5 Bicarbonate transport system permease protein CmpB compare
GFF2067 -0.4 -2.0 hypothetical protein compare
GFF1836 -0.4 -2.6 hypothetical protein compare
GFF814 -0.4 -1.7 hypothetical protein compare
GFF505 -0.4 -0.7 hypothetical protein compare
GFF1457 -0.4 -2.5 Periplasmic pH-dependent serine endoprotease DegQ compare
GFF2667 -0.4 -2.2 Thermostable monoacylglycerol lipase compare
GFF635 -0.4 -3.2 Ribonuclease R compare
GFF2260 -0.4 -2.1 hypothetical protein compare
GFF474 -0.4 -2.0 NADP-dependent malic enzyme compare
GFF660 -0.4 -2.2 Colicin V production protein compare
GFF229 -0.4 -0.9 5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase compare
GFF451 -0.4 -1.9 hypothetical protein compare
GFF2566 -0.4 -1.9 Arginine biosynthesis bifunctional protein ArgJ compare
GFF1037 -0.4 -1.3 Heat shock protein 15 compare
GFF1639 -0.4 -1.4 hypothetical protein compare
GFF691 -0.4 -0.9 hypothetical protein compare
GFF453 -0.4 -1.4 NAD(P)H dehydrogenase (quinone) compare
GFF448 -0.4 -1.5 Murein hydrolase activator NlpD compare
GFF1444 -0.4 -2.7 Isoquinoline 1-oxidoreductase subunit beta compare
GFF924 -0.4 -1.3 Beta-hexosaminidase compare
GFF632 -0.4 -2.2 putative metal-dependent hydrolase YcfH compare
GFF1053 -0.4 -1.5 Peptide deformylase compare
GFF2174 -0.4 -1.5 Glutathione synthetase compare
GFF1058 -0.4 -2.2 hypothetical protein compare
GFF2545 -0.4 -1.7 putative GST-like protein YibF compare
GFF139 -0.4 -1.5 hypothetical protein compare
GFF1890 -0.4 -1.3 hypothetical protein compare
GFF270 -0.4 -1.7 Xaa-Pro aminopeptidase compare
GFF1296 -0.4 -1.9 hypothetical protein compare
GFF146 -0.4 -1.4 Iron-sulfur cluster insertion protein ErpA compare
GFF1443 -0.4 -1.6 Isoquinoline 1-oxidoreductase subunit alpha compare
GFF2024 -0.4 -1.4 DNA-binding transcriptional regulator NtrC compare
GFF56 -0.4 -1.8 hypothetical protein compare
GFF1423 -0.4 -2.1 hypothetical protein compare
GFF2372 -0.4 -1.3 hypothetical protein compare
GFF738 -0.4 -0.8 hypothetical protein compare
GFF915 -0.4 -1.8 hypothetical protein compare
GFF1725 -0.4 -1.7 ECF RNA polymerase sigma factor SigM compare
GFF443 -0.4 -1.9 IS110 family transposase ISCARN111 compare
GFF977 -0.3 -1.4 Protein MgtC compare
GFF1049 -0.3 -2.1 Hydroxysqualene dehydroxylase compare
GFF233 -0.3 -1.9 hypothetical protein compare
GFF821 -0.3 -2.1 Magnesium and cobalt efflux protein CorC compare
GFF410 -0.3 -2.0 hypothetical protein compare
GFF328 -0.3 -2.0 hypothetical protein compare
GFF2570 -0.3 -1.7 Peptidyl-prolyl cis-trans isomerase B compare
GFF935 -0.3 -1.9 Flavodoxin FldP compare
GFF2579 -0.3 -1.5 hypothetical protein compare
GFF161 -0.3 -0.9 hypothetical protein compare
GFF711 -0.3 -2.0 hypothetical protein compare
GFF369 -0.3 -1.4 hypothetical protein compare
GFF2449 -0.3 -1.4 hypothetical protein compare
GFF145 -0.3 -0.7 Iron-binding protein IscA compare
GFF163 -0.3 -1.2 Cysteine desulfurase NifS compare
GFF1276 -0.3 -2.1 Vitamin B12 transporter BtuB compare
GFF1107 -0.3 -1.4 hypothetical protein compare
GFF1407 -0.3 -1.1 hypothetical protein compare
GFF2126 -0.3 -0.7 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
GFF1351 -0.3 -1.6 Chemotaxis protein CheW compare
GFF2371 -0.3 -1.4 hypothetical protein compare
GFF2745 -0.3 -1.1 tRNA threonylcarbamoyladenosine dehydratase compare
GFF1848 -0.3 -1.7 Type I secretion system ATP-binding protein PrsD compare
GFF625 -0.3 -1.6 hypothetical protein compare
GFF768 -0.3 -2.0 Lactoylglutathione lyase compare
GFF364 -0.3 -1.9 hypothetical protein compare
GFF92 -0.3 -1.3 hypothetical protein compare
GFF568 -0.3 -1.5 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase compare
GFF1292 -0.3 -1.5 hypothetical protein compare
GFF2824 -0.3 -1.5 Outer membrane protein TolC compare
GFF1982 -0.3 -1.3 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
GFF354 -0.3 -1.8 Membrane-bound lytic murein transglycosylase F compare


Specific Phenotypes

None in this experiment

For Methylophilus sp. DMC18 in supernatant experiments

For supernatant Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane across organisms