Experiment set1S65 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; high oxygen

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_05690 +1.2 8.1 Protein phosphotransferase ChpT compare
MPMX19_01349 +1.1 8.2 hypothetical protein compare
MPMX19_03631 +1.1 2.1 hypothetical protein compare
MPMX19_06197 +1.1 1.9 hypothetical protein compare
MPMX19_01482 +1.1 9.0 hypothetical protein compare
MPMX19_01493 +1.1 3.0 Flagellar assembly protein FliX compare
MPMX19_02460 +1.0 9.9 Motility protein A compare
MPMX19_01479 +1.0 5.6 hypothetical protein compare
MPMX19_04088 +1.0 4.8 Signal recognition particle 54 kDa protein compare
MPMX19_04225 +1.0 5.8 hypothetical protein compare
MPMX19_00212 +1.0 8.6 Nitrogen fixation regulation protein FixK compare
MPMX19_05685 +1.0 7.2 Protein-glutamate methylesterase/protein-glutamine glutaminase 2 compare
MPMX19_05623 +1.0 4.9 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_01480 +0.9 5.7 hypothetical protein compare
MPMX19_01497 +0.9 4.0 hypothetical protein compare
MPMX19_05622 +0.9 7.3 Sensor histidine kinase RegB compare
MPMX19_04258 +0.9 3.1 hypothetical protein compare
MPMX19_01729 +0.9 2.3 Ethylmalonyl-CoA/methylmalonyl-CoA epimerase compare
MPMX19_04199 +0.8 6.4 Pseudaminic acid synthase compare
MPMX19_01481 +0.8 7.0 Flagellar motor switch protein FliM compare
MPMX19_04198 +0.8 7.2 hypothetical protein compare
MPMX19_03439 +0.8 2.3 hypothetical protein compare
MPMX19_06545 +0.8 7.4 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
MPMX19_00866 +0.8 5.3 Flagellar biosynthetic protein FliR compare
MPMX19_04094 +0.8 6.2 Flagellar M-ring protein compare
MPMX19_06544 +0.8 6.7 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
MPMX19_04093 +0.8 3.1 hypothetical protein compare
MPMX19_04090 +0.8 6.0 Anaerobic nitric oxide reductase transcription regulator NorR compare
MPMX19_01483 +0.8 6.6 Flagellar basal-body rod protein FlgG compare
MPMX19_06577 +0.8 5.9 hypothetical protein compare
MPMX19_01486 +0.8 5.7 Flagellar L-ring protein compare
MPMX19_01864 +0.8 2.3 Regulatory protein AtoC compare
MPMX19_06610 +0.8 2.1 hypothetical protein compare
MPMX19_00864 +0.8 3.1 Flagellar hook-basal body complex protein FliE compare
MPMX19_04204 +0.8 5.2 D-alanine--D-alanyl carrier protein ligase compare
MPMX19_04551 +0.8 1.9 HTH-type transcriptional repressor RspR compare
MPMX19_05254 +0.8 1.9 Carbon monoxide dehydrogenase small chain compare
MPMX19_06353 +0.8 1.1 hypothetical protein compare
MPMX19_00478 +0.8 1.7 putative protein RP812 compare
MPMX19_01485 +0.8 6.0 hypothetical protein compare
MPMX19_04206 +0.7 3.8 3-oxoacyl-[acyl-carrier-protein] synthase 3 compare
MPMX19_01059 +0.7 1.7 hypothetical protein compare
MPMX19_06888 +0.7 2.7 hypothetical protein compare
MPMX19_06211 +0.7 2.3 tRNA-Ala compare
MPMX19_00868 +0.7 6.9 Sensor kinase CckA compare
MPMX19_03916 +0.7 2.4 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
MPMX19_04000 +0.7 2.5 Flagellar motor switch protein FliG compare
MPMX19_04200 +0.7 5.1 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase compare
MPMX19_06539 +0.7 1.9 hypothetical protein compare
MPMX19_05714 +0.7 5.3 hypothetical protein compare
MPMX19_06580 +0.7 3.8 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_06581 +0.7 5.2 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 compare
MPMX19_03939 +0.7 2.5 Enoyl-CoA-hydratase compare
MPMX19_03976 +0.7 4.0 hypothetical protein compare
MPMX19_01484 +0.7 4.5 Flagellar basal-body rod protein FlgG compare
MPMX19_00863 +0.7 4.5 Flagellar basal-body rod protein FlgC compare
MPMX19_06509 +0.7 2.6 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_04222 +0.7 5.9 hypothetical protein compare
MPMX19_04212 +0.7 5.6 Photosystem I assembly protein Ycf3 compare
MPMX19_00708 +0.7 5.2 hypothetical protein compare
MPMX19_04223 +0.7 6.0 hypothetical protein compare
MPMX19_03073 +0.7 2.7 hypothetical protein compare
MPMX19_00311 +0.7 6.0 hypothetical protein compare
MPMX19_02532 +0.7 1.9 Cytochrome c-type biogenesis protein CcmE compare
MPMX19_06585 +0.6 6.1 hypothetical protein compare
MPMX19_06195 +0.6 2.2 hypothetical protein compare
MPMX19_03421 +0.6 2.3 hypothetical protein compare
MPMX19_06202 +0.6 1.5 hypothetical protein compare
MPMX19_05688 +0.6 4.5 Sensor histidine kinase RcsC compare
MPMX19_06582 +0.6 5.7 hypothetical protein compare
MPMX19_04224 +0.6 5.9 hypothetical protein compare
MPMX19_00813 +0.6 1.8 HTH-type transcriptional regulator CysL compare
MPMX19_00854 +0.6 5.9 hypothetical protein compare
MPMX19_00907 +0.6 3.7 putative oxidoreductase YciK compare
MPMX19_06897 +0.6 2.7 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_01283 +0.6 2.4 hypothetical protein compare
MPMX19_05575 +0.6 2.7 hypothetical protein compare
MPMX19_00725 +0.6 3.9 Transcriptional regulatory protein ros compare
MPMX19_04202 +0.6 2.7 Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system compare
MPMX19_01494 +0.6 4.5 Flagellar P-ring protein compare
MPMX19_04209 +0.6 5.2 Lipopolysaccharide assembly protein B compare
MPMX19_02404 +0.6 2.2 LexA repressor compare
MPMX19_06661 +0.6 2.9 hypothetical protein compare
MPMX19_04120 +0.6 2.3 hypothetical protein compare
MPMX19_00858 +0.6 3.1 Flagellar biosynthetic protein FliP compare
MPMX19_06584 +0.6 5.4 Asparagine synthetase [glutamine-hydrolyzing] 1 compare
MPMX19_00438 +0.6 4.9 (R)-specific enoyl-CoA hydratase compare
MPMX19_03868 +0.6 2.0 Xylitol-binding protein compare
MPMX19_04265 +0.6 1.7 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_03816 +0.6 1.8 hypothetical protein compare
MPMX19_02039 +0.6 3.0 hypothetical protein compare
MPMX19_00862 +0.6 4.2 hypothetical protein compare
MPMX19_01781 +0.6 4.5 Enoyl-[acyl-carrier-protein] reductase [NADH] FabI compare
MPMX19_01617 +0.6 1.3 hypothetical protein compare
MPMX19_05687 +0.6 2.8 Chemotaxis protein CheW compare
MPMX19_06042 +0.6 3.4 hypothetical protein compare
MPMX19_00206 +0.6 4.2 Cytochrome c oxidase subunit 1, bacteroid compare
MPMX19_06773 +0.5 2.2 2-(R)-hydroxypropyl-CoM dehydrogenase compare
MPMX19_02746 +0.5 4.1 Peptidyl-lysine N-acetyltransferase Pat compare
MPMX19_02313 +0.5 3.8 Oxygen-independent coproporphyrinogen III oxidase compare
MPMX19_05679 +0.5 4.1 Flagellum-specific ATP synthase compare
MPMX19_04205 +0.5 2.6 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_00208 +0.5 1.2 hypothetical protein compare
MPMX19_03491 +0.5 1.1 putative FAD-linked oxidoreductase compare
MPMX19_04738 +0.5 1.5 hypothetical protein compare
MPMX19_00773 +0.5 2.0 hypothetical protein compare
MPMX19_05104 +0.5 1.7 hypothetical protein compare
MPMX19_06535 +0.5 2.3 hypothetical protein compare
MPMX19_00853 +0.5 3.8 hypothetical protein compare
MPMX19_04393 +0.5 1.7 hypothetical protein compare
MPMX19_04726 +0.5 1.5 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_00867 +0.5 4.4 Flagellar biosynthetic protein FlhB compare
MPMX19_04622 +0.5 3.8 hypothetical protein compare
MPMX19_02816 +0.5 1.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_06578 +0.5 3.7 hypothetical protein compare
MPMX19_02353 +0.5 2.3 hypothetical protein compare
MPMX19_03731 +0.5 2.4 hypothetical protein compare
MPMX19_04087 +0.5 1.6 Flagellum site-determining protein YlxH compare
MPMX19_04779 +0.5 1.5 hypothetical protein compare
MPMX19_02415 +0.5 2.1 Transcriptional regulatory protein WalR compare
MPMX19_05621 +0.5 2.6 ABC transporter ATP-binding protein NatA compare
MPMX19_05196 +0.5 2.3 Alpha-ketoglutarate-dependent taurine dioxygenase compare
MPMX19_06266 +0.5 1.5 hypothetical protein compare
MPMX19_00475 +0.5 1.4 hypothetical protein compare
MPMX19_03595 +0.5 3.2 C4-dicarboxylate transport protein 2 compare
MPMX19_05853 +0.5 1.7 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06381 +0.5 1.3 putative manganese efflux pump MntP compare
MPMX19_04624 +0.5 3.3 hypothetical protein compare
MPMX19_05762 +0.5 1.6 hypothetical protein compare
MPMX19_03100 +0.5 2.1 hypothetical protein compare
MPMX19_04207 +0.5 1.9 hypothetical protein compare
MPMX19_04257 +0.5 3.4 D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase compare
MPMX19_03455 +0.5 1.6 HTH-type transcriptional repressor NagR compare
MPMX19_06198 +0.5 2.2 hypothetical protein compare
MPMX19_01958 +0.5 3.6 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
MPMX19_05658 +0.5 1.1 hypothetical protein compare
MPMX19_01978 +0.5 1.0 hypothetical protein compare
MPMX19_01438 +0.5 2.7 hypothetical protein compare
MPMX19_06144 +0.5 1.1 hypothetical protein compare
MPMX19_03694 +0.4 1.1 hypothetical protein compare
MPMX19_06569 +0.4 1.8 hypothetical protein compare
MPMX19_00085 +0.4 1.7 hypothetical protein compare
MPMX19_00318 +0.4 2.4 hypothetical protein compare
MPMX19_04010 +0.4 1.6 Isoaspartyl peptidase compare
MPMX19_02149 +0.4 1.8 hypothetical protein compare
MPMX19_05060 +0.4 2.6 hypothetical protein compare
MPMX19_05930 +0.4 1.5 Dipeptidyl-peptidase 6 compare
MPMX19_00664 +0.4 1.0 hypothetical protein compare
MPMX19_01496 +0.4 3.0 hypothetical protein compare
MPMX19_05067 +0.4 1.5 hypothetical protein compare
MPMX19_03067 +0.4 2.1 hypothetical protein compare
MPMX19_02565 +0.4 4.1 hypothetical protein compare
MPMX19_06099 +0.4 3.3 hypothetical protein compare
MPMX19_05178 +0.4 1.8 Alkanesulfonate monooxygenase compare
MPMX19_06510 +0.4 1.5 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_06471 +0.4 2.0 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_01235 +0.4 1.0 hypothetical protein compare
MPMX19_00515 +0.4 3.1 hypothetical protein compare
MPMX19_01955 +0.4 0.9 Putative anti-sigma factor antagonist compare
MPMX19_06519 +0.4 0.9 HTH-type transcriptional repressor NagR compare
MPMX19_03083 +0.4 1.4 hypothetical protein compare
MPMX19_04986 +0.4 1.7 hypothetical protein compare
MPMX19_03825 +0.4 1.0 IS5 family transposase IS4811 compare
MPMX19_00190 +0.4 1.7 hypothetical protein compare
MPMX19_05205 +0.4 1.7 hypothetical protein compare
MPMX19_03866 +0.4 1.2 Ribose import permease protein RbsC compare
MPMX19_02069 +0.4 2.1 hypothetical protein compare
MPMX19_05379 +0.4 1.8 hypothetical protein compare
MPMX19_05011 +0.4 2.0 tRNA (cytidine(34)-2'-O)-methyltransferase compare
MPMX19_03715 +0.4 1.6 Response regulator ArlR compare
MPMX19_05745 +0.4 3.1 Sensor histidine kinase RcsC compare
MPMX19_06644 +0.4 3.7 GDP-mannose 4,6-dehydratase compare
MPMX19_03823 +0.4 1.3 hypothetical protein compare
MPMX19_05207 +0.4 0.8 Hemolysin secretion protein D, plasmid compare
MPMX19_00872 +0.4 1.4 hypothetical protein compare
MPMX19_05798 +0.4 1.1 HTH-type transcriptional repressor NanR compare
MPMX19_04825 +0.4 1.3 hypothetical protein compare
MPMX19_06691 +0.4 1.5 hypothetical protein compare
MPMX19_01178 +0.4 3.5 hypothetical protein compare
MPMX19_05470 +0.4 1.5 hypothetical protein compare
MPMX19_05578 +0.4 2.6 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_00207 +0.4 2.1 hypothetical protein compare
MPMX19_05678 +0.4 2.6 hypothetical protein compare
MPMX19_06928 +0.4 1.0 hypothetical protein compare
MPMX19_06460 +0.4 1.4 DNA-invertase hin compare
MPMX19_04572 +0.4 2.7 Putative protein-methionine-sulfoxide reductase subunit YedZ1 compare
MPMX19_03897 +0.4 1.2 hypothetical protein compare
MPMX19_01727 +0.4 1.5 hypothetical protein compare
MPMX19_04051 +0.4 1.9 Alcohol dehydrogenase compare
MPMX19_03972 +0.4 1.5 Enolase compare
MPMX19_04089 +0.4 3.3 Flagellar biosynthesis protein FlhA compare
MPMX19_04770 +0.4 1.9 Sialic acid-binding periplasmic protein SiaP compare
MPMX19_00626 +0.4 3.1 Energy-dependent translational throttle protein EttA compare
MPMX19_06990 +0.4 1.4 NADH oxidase compare
MPMX19_02084 +0.4 0.6 hypothetical protein compare
MPMX19_06547 +0.4 1.7 hypothetical protein compare
MPMX19_00822 +0.4 2.2 Divalent metal cation transporter MntH compare
MPMX19_04276 +0.4 1.3 hypothetical protein compare
MPMX19_01398 +0.4 2.8 hypothetical protein compare
MPMX19_03044 +0.4 1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm; high oxygen experiments