Experiment set1S634 for Mucilaginibacter yixingensis YX-36 DSM 26809
Kanamycin sulfate stress 0.05 mg/ml
Group: stressMedia: R2A + Kanamycin sulfate (0.05 mg/ml)
Culturing: Mucilaginibacter_YX36_ML5a, tube, Aerobic, at 30 (C), shaken=200 rpm
By: Marta Torres on 4/20/23
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Specific Phenotypes
For 5 genes in this experiment
For stress Kanamycin sulfate in Mucilaginibacter yixingensis YX-36 DSM 26809
For stress Kanamycin sulfate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| LMPTP YfkJ cluster | 1 |
| Pyruvate metabolism I: anaplerotic reactions, PEP | 1 |
| tRNA processing | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pyruvate metabolism
- Carbon fixation in photosynthetic organisms
- Biosynthesis of terpenoids and steroids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Biosynthesis of alkaloids derived from histidine and purine
- Biosynthesis of alkaloids derived from terpenoid and polyketide
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| C4 photosynthetic carbon assimilation cycle, NADP-ME type | 7 | 4 | 2 |
| methylgallate degradation | 6 | 2 | 1 |
| C4 photosynthetic carbon assimilation cycle, PEPCK type | 14 | 6 | 2 |
| protocatechuate degradation I (meta-cleavage pathway) | 8 | 3 | 1 |
| superpathway of vanillin and vanillate degradation | 10 | 3 | 1 |
| syringate degradation | 12 | 3 | 1 |
| gluconeogenesis I | 13 | 11 | 1 |