Experiment set1S63 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; high oxygen

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_01479 +1.1 6.1 hypothetical protein compare
MPMX19_05690 +1.1 7.7 Protein phosphotransferase ChpT compare
MPMX19_01349 +1.1 8.5 hypothetical protein compare
MPMX19_04088 +1.0 5.0 Signal recognition particle 54 kDa protein compare
MPMX19_05622 +1.0 7.8 Sensor histidine kinase RegB compare
MPMX19_00212 +1.0 8.3 Nitrogen fixation regulation protein FixK compare
MPMX19_04198 +1.0 8.4 hypothetical protein compare
MPMX19_05623 +1.0 4.9 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_02460 +0.9 8.4 Motility protein A compare
MPMX19_05586 +0.9 1.7 hypothetical protein compare
MPMX19_01482 +0.9 7.0 hypothetical protein compare
MPMX19_06577 +0.8 6.3 hypothetical protein compare
MPMX19_03823 +0.8 3.3 hypothetical protein compare
MPMX19_01484 +0.8 5.4 Flagellar basal-body rod protein FlgG compare
MPMX19_00858 +0.8 3.5 Flagellar biosynthetic protein FliP compare
MPMX19_03635 +0.8 1.5 DNA-binding transcriptional activator DecR compare
MPMX19_04393 +0.8 2.9 hypothetical protein compare
MPMX19_04225 +0.8 4.3 hypothetical protein compare
MPMX19_06545 +0.8 6.9 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
MPMX19_01480 +0.7 3.8 hypothetical protein compare
MPMX19_03655 +0.7 1.6 hypothetical protein compare
MPMX19_02865 +0.7 2.7 hypothetical protein compare
MPMX19_06197 +0.7 1.6 hypothetical protein compare
MPMX19_04087 +0.7 2.0 Flagellum site-determining protein YlxH compare
MPMX19_01481 +0.7 5.6 Flagellar motor switch protein FliM compare
MPMX19_00244 +0.7 2.8 hypothetical protein compare
MPMX19_06544 +0.7 5.8 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
MPMX19_06506 +0.7 2.2 hypothetical protein compare
MPMX19_01493 +0.7 2.2 Flagellar assembly protein FliX compare
MPMX19_04199 +0.7 4.7 Pseudaminic acid synthase compare
MPMX19_06297 +0.7 1.2 hypothetical protein compare
MPMX19_05234 +0.7 3.0 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_04206 +0.7 4.1 3-oxoacyl-[acyl-carrier-protein] synthase 3 compare
MPMX19_03439 +0.7 1.1 hypothetical protein compare
MPMX19_03891 +0.7 2.8 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_02811 +0.7 2.4 Long-chain-alcohol dehydrogenase 1 compare
MPMX19_05575 +0.7 2.8 hypothetical protein compare
MPMX19_05685 +0.7 4.8 Protein-glutamate methylesterase/protein-glutamine glutaminase 2 compare
MPMX19_03504 +0.6 1.7 Sulfur carrier protein FdhD compare
MPMX19_06207 +0.6 2.6 hypothetical protein compare
MPMX19_03195 +0.6 1.7 hypothetical protein compare
MPMX19_04985 +0.6 1.2 HTH-type transcriptional regulator DmlR compare
MPMX19_04332 +0.6 2.9 hypothetical protein compare
MPMX19_04271 +0.6 1.6 Response regulator rcp1 compare
MPMX19_02109 +0.6 3.0 hypothetical protein compare
MPMX19_03072 +0.6 1.4 hypothetical protein compare
MPMX19_05205 +0.6 2.4 hypothetical protein compare
MPMX19_01811 +0.6 1.6 hypothetical protein compare
MPMX19_00708 +0.6 5.2 hypothetical protein compare
MPMX19_00725 +0.6 3.8 Transcriptional regulatory protein ros compare
MPMX19_05813 +0.6 1.5 2-hydroxy-3-oxopropionate reductase compare
MPMX19_04120 +0.6 2.4 hypothetical protein compare
MPMX19_04212 +0.6 5.2 Photosystem I assembly protein Ycf3 compare
MPMX19_00186 +0.6 1.0 hypothetical protein compare
MPMX19_06156 +0.6 2.3 hypothetical protein compare
MPMX19_01012 +0.6 2.3 Cyclic pyranopterin monophosphate synthase compare
MPMX19_04207 +0.6 2.0 hypothetical protein compare
MPMX19_02039 +0.6 3.3 hypothetical protein compare
MPMX19_04986 +0.6 1.9 hypothetical protein compare
MPMX19_04700 +0.6 2.2 Adaptive-response sensory-kinase SasA compare
MPMX19_03800 +0.6 1.9 hypothetical protein compare
MPMX19_03734 +0.6 0.7 RutC family protein YjgH compare
MPMX19_06785 +0.6 1.9 L-idonate 5-dehydrogenase (NAD(P)(+)) compare
MPMX19_02779 +0.6 1.5 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_06581 +0.6 4.0 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 compare
MPMX19_04540 +0.6 3.0 hypothetical protein compare
MPMX19_06777 +0.6 1.9 hypothetical protein compare
MPMX19_05762 +0.6 1.9 hypothetical protein compare
MPMX19_00534 +0.6 3.6 hypothetical protein compare
MPMX19_02492 +0.6 1.8 hypothetical protein compare
MPMX19_04743 +0.6 1.9 Formyltransferase/hydrolase complex subunit D compare
MPMX19_00866 +0.6 3.6 Flagellar biosynthetic protein FliR compare
MPMX19_00868 +0.6 5.1 Sensor kinase CckA compare
MPMX19_01958 +0.6 4.3 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
MPMX19_05068 +0.6 2.1 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA compare
MPMX19_04090 +0.6 4.2 Anaerobic nitric oxide reductase transcription regulator NorR compare
MPMX19_06661 +0.5 2.5 hypothetical protein compare
MPMX19_01483 +0.5 4.4 Flagellar basal-body rod protein FlgG compare
MPMX19_00318 +0.5 2.6 hypothetical protein compare
MPMX19_01117 +0.5 2.6 GTPase HflX compare
MPMX19_06464 +0.5 2.1 Tryptophan synthase beta chain compare
MPMX19_05224 +0.5 1.8 hypothetical protein compare
MPMX19_05005 +0.5 2.4 hypothetical protein compare
MPMX19_06379 +0.5 1.9 hypothetical protein compare
MPMX19_04204 +0.5 4.0 D-alanine--D-alanyl carrier protein ligase compare
MPMX19_04968 +0.5 1.6 hypothetical protein compare
MPMX19_01604 +0.5 3.0 hypothetical protein compare
MPMX19_06281 +0.5 1.8 hypothetical protein compare
MPMX19_04094 +0.5 3.9 Flagellar M-ring protein compare
MPMX19_04092 +0.5 3.5 Flagellar motor switch protein FliN compare
MPMX19_00619 +0.5 2.1 Diacetyl reductase [(S)-acetoin forming] compare
MPMX19_04200 +0.5 3.6 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase compare
MPMX19_01485 +0.5 4.0 hypothetical protein compare
MPMX19_04973 +0.5 2.9 hypothetical protein compare
MPMX19_04209 +0.5 4.6 Lipopolysaccharide assembly protein B compare
MPMX19_02806 +0.5 1.3 HTH-type transcriptional regulator DmlR compare
MPMX19_04081 +0.5 0.9 hypothetical protein compare
MPMX19_00544 +0.5 1.5 hypothetical protein compare
MPMX19_00438 +0.5 4.2 (R)-specific enoyl-CoA hydratase compare
MPMX19_04224 +0.5 4.9 hypothetical protein compare
MPMX19_06042 +0.5 2.6 hypothetical protein compare
MPMX19_00663 +0.5 1.7 hypothetical protein compare
MPMX19_03450 +0.5 1.3 hypothetical protein compare
MPMX19_05551 +0.5 2.0 Chemotaxis protein CheY compare
MPMX19_00577 +0.5 2.7 Ribosomal RNA small subunit methyltransferase E compare
MPMX19_02746 +0.5 3.7 Peptidyl-lysine N-acetyltransferase Pat compare
MPMX19_02313 +0.5 3.6 Oxygen-independent coproporphyrinogen III oxidase compare
MPMX19_04089 +0.5 4.3 Flagellar biosynthesis protein FlhA compare
MPMX19_03963 +0.5 3.0 hypothetical protein compare
MPMX19_06221 +0.5 2.1 L-2-keto-3-deoxyarabonate dehydratase compare
MPMX19_04240 +0.5 2.0 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_04223 +0.5 4.4 hypothetical protein compare
MPMX19_06584 +0.5 4.5 Asparagine synthetase [glutamine-hydrolyzing] 1 compare
MPMX19_06471 +0.5 2.0 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_03109 +0.5 1.9 hypothetical protein compare
MPMX19_06585 +0.5 4.5 hypothetical protein compare
MPMX19_06381 +0.5 1.1 putative manganese efflux pump MntP compare
MPMX19_04013 +0.5 2.0 hypothetical protein compare
MPMX19_03420 +0.5 1.3 hypothetical protein compare
MPMX19_05918 +0.5 2.5 Flagellar biosynthetic protein FliP compare
MPMX19_02565 +0.5 4.6 hypothetical protein compare
MPMX19_04025 +0.5 1.8 hypothetical protein compare
MPMX19_00311 +0.5 4.4 hypothetical protein compare
MPMX19_03710 +0.5 2.3 Glycine cleavage system transcriptional activator compare
MPMX19_03073 +0.5 1.8 hypothetical protein compare
MPMX19_04222 +0.5 4.0 hypothetical protein compare
MPMX19_06886 +0.5 2.2 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_03095 +0.5 1.3 hypothetical protein compare
MPMX19_00129 +0.5 0.7 hypothetical protein compare
MPMX19_05687 +0.5 2.3 Chemotaxis protein CheW compare
MPMX19_01926 +0.5 3.3 Small heat shock protein IbpA compare
MPMX19_06467 +0.5 2.0 hypothetical protein compare
MPMX19_04258 +0.5 1.5 hypothetical protein compare
MPMX19_02539 +0.5 2.2 hypothetical protein compare
MPMX19_06526 +0.5 1.9 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_01957 +0.5 3.5 Sensor histidine kinase RcsC compare
MPMX19_06896 +0.5 1.8 L-aspartate oxidase compare
MPMX19_06773 +0.5 1.7 2-(R)-hydroxypropyl-CoM dehydrogenase compare
MPMX19_03789 +0.5 2.4 hypothetical protein compare
MPMX19_01059 +0.5 1.0 hypothetical protein compare
MPMX19_06646 +0.5 2.1 hypothetical protein compare
MPMX19_01600 +0.5 2.1 hypothetical protein compare
MPMX19_03883 +0.4 2.1 hypothetical protein compare
MPMX19_03375 +0.4 2.1 Outer membrane protein TolC compare
MPMX19_05745 +0.4 3.3 Sensor histidine kinase RcsC compare
MPMX19_06610 +0.4 1.1 hypothetical protein compare
MPMX19_01781 +0.4 3.4 Enoyl-[acyl-carrier-protein] reductase [NADH] FabI compare
MPMX19_00854 +0.4 4.1 hypothetical protein compare
MPMX19_03262 +0.4 1.6 putative HTH-type transcriptional repressor ExuR compare
MPMX19_03075 +0.4 2.6 hypothetical protein compare
MPMX19_06269 +0.4 2.3 IS110 family transposase ISHne4 compare
MPMX19_01679 +0.4 2.4 hypothetical protein compare
MPMX19_00863 +0.4 2.7 Flagellar basal-body rod protein FlgC compare
MPMX19_01061 +0.4 2.6 Glutathione-regulated potassium-efflux system protein KefC compare
MPMX19_05178 +0.4 1.9 Alkanesulfonate monooxygenase compare
MPMX19_04952 +0.4 0.7 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_03561 +0.4 2.1 Propane 2-monooxygenase, effector component compare
MPMX19_06578 +0.4 3.2 hypothetical protein compare
MPMX19_01494 +0.4 3.2 Flagellar P-ring protein compare
MPMX19_06492 +0.4 1.9 IS5 family transposase ISAzs10 compare
MPMX19_04726 +0.4 1.4 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_05167 +0.4 2.0 hypothetical protein compare
MPMX19_00515 +0.4 3.1 hypothetical protein compare
MPMX19_05188 +0.4 1.7 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_02254 +0.4 1.8 hypothetical protein compare
MPMX19_02792 +0.4 1.9 HTH-type transcriptional regulator KipR compare
MPMX19_06746 +0.4 0.5 Chemotaxis protein CheW compare
MPMX19_01717 +0.4 2.2 Pyrophosphatase PpaX compare
MPMX19_03819 +0.4 2.0 NADP-reducing hydrogenase subunit HndA compare
MPMX19_01766 +0.4 2.5 Phosphate-specific transport system accessory protein PhoU compare
MPMX19_06989 +0.4 1.2 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_05714 +0.4 3.0 hypothetical protein compare
MPMX19_04302 +0.4 2.4 hypothetical protein compare
MPMX19_03169 +0.4 1.0 Dihydroanticapsin 7-dehydrogenase compare
MPMX19_05483 +0.4 1.5 hypothetical protein compare
MPMX19_03558 +0.4 1.3 hypothetical protein compare
MPMX19_00472 +0.4 0.9 Protein HesB, heterocyst compare
MPMX19_06390 +0.4 2.1 hypothetical protein compare
MPMX19_05065 +0.4 0.9 Farnesyl diphosphate synthase compare
MPMX19_01486 +0.4 3.0 Flagellar L-ring protein compare
MPMX19_06509 +0.4 1.3 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_01495 +0.4 1.3 hypothetical protein compare
MPMX19_06099 +0.4 3.2 hypothetical protein compare
MPMX19_01244 +0.4 1.5 hypothetical protein compare
MPMX19_00414 +0.4 0.9 Pyruvate dehydrogenase complex repressor compare
MPMX19_01438 +0.4 2.2 hypothetical protein compare
MPMX19_00362 +0.4 1.1 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_05282 +0.4 1.5 1,3,6,8-tetrahydroxynaphthalene synthase compare
MPMX19_00878 +0.4 1.9 Guanidinium exporter compare
MPMX19_00167 +0.4 1.1 hypothetical protein compare
MPMX19_05850 +0.4 1.2 hypothetical protein compare
MPMX19_01243 +0.4 0.8 hypothetical protein compare
MPMX19_04573 +0.4 2.7 Putative protein-methionine-sulfoxide reductase subunit YedZ1 compare
MPMX19_02791 +0.4 2.3 Haloalkane dehalogenase compare
MPMX19_06264 +0.4 1.6 hypothetical protein compare
MPMX19_03937 +0.4 1.2 Acyl-CoA dehydrogenase compare
MPMX19_02187 +0.4 2.1 hypothetical protein compare
MPMX19_05047 +0.4 2.0 Glycine cleavage system transcriptional activator compare
MPMX19_01617 +0.4 0.8 hypothetical protein compare
MPMX19_01667 +0.4 3.0 putative amino-acid metabolite efflux pump compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm; high oxygen experiments