Experiment set1S61 for Xanthobacter sp. DMC5

Compare to:

Sodium D,L-Lactate and casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
GFF287 -2.3 -2.8 hypothetical protein compare
GFF4924 -2.3 -1.7 hypothetical protein compare
GFF4576 -2.3 -1.7 hypothetical protein compare
GFF718 -2.2 -2.1 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha compare
GFF1261 -2.2 -1.6 hypothetical protein compare
GFF2207 -2.1 -1.6 hypothetical protein compare
GFF1435 -2.1 -1.5 Beta-ketoadipyl-CoA thiolase compare
GFF1515 -2.0 -2.3 Nicotinamide-nucleotide amidohydrolase PncC compare
GFF3124 -2.0 -1.5 hypothetical protein compare
GFF1843 -1.9 -1.8 3-isopropylmalate dehydratase small subunit 1 compare
GFF4685 -1.8 -1.7 HTH-type transcriptional regulator HdfR compare
GFF4421 -1.8 -1.7 Corrinoid adenosyltransferase compare
GFF3048 -1.8 -2.3 Riboflavin transport system permease protein RibX compare
GFF4703 -1.7 -1.5 Alcohol dehydrogenase compare
GFF4355 -1.7 -1.6 hypothetical protein compare
GFF1849 -1.7 -2.4 putative nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
GFF724 -1.6 -1.6 hypothetical protein compare
GFF1848 -1.6 -2.8 L-aspartate oxidase compare
GFF1695 -1.6 -4.8 3-isopropylmalate dehydrogenase compare
GFF699 -1.6 -1.8 Holin-like protein CidA compare
GFF2470 -1.6 -2.1 hypothetical protein compare
GFF3443 -1.6 -2.5 Putative phosphonates utilization ATP-binding protein PhnK compare
GFF4546 -1.5 -1.3 Short-chain-enoyl-CoA hydratase compare
GFF917 -1.5 -5.8 hypothetical protein compare
GFF4540 -1.5 -2.2 HTH-type transcriptional repressor NicR compare
GFF3019 -1.5 -1.9 hypothetical protein compare
GFF3984 -1.5 -1.3 Nitrogen regulatory protein P-II 2 compare
GFF3592 -1.5 -0.9 hypothetical protein compare
GFF3357 -1.4 -3.0 Citrate lyase subunit beta compare
GFF4188 -1.4 -1.8 hypothetical protein compare
GFF3424 -1.4 -2.7 Nitrilotriacetate monooxygenase component A compare
GFF2045 -1.3 -1.5 tRNA pseudouridine synthase A compare
GFF2497 -1.3 -2.1 (3S)-malyl-CoA thioesterase compare
GFF482 -1.3 -1.7 hypothetical protein compare
GFF3709 -1.3 -2.1 Bifunctional coenzyme PQQ synthesis protein C/D compare
GFF4723 -1.3 -2.6 Multidrug resistance ABC transporter ATP-binding/permease protein BmrA compare
GFF3742 -1.2 -2.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
GFF4409 -1.2 -2.1 Succinate--CoA ligase [ADP-forming] subunit alpha compare
GFF1179 -1.2 -1.8 Dihydroanticapsin 7-dehydrogenase compare
GFF3492 -1.2 -1.1 hypothetical protein compare
GFF888 -1.2 -1.3 hypothetical protein compare
GFF4061 -1.2 -1.1 hypothetical protein compare
GFF2987 -1.2 -1.9 hypothetical protein compare
GFF3698 -1.2 -1.4 hypothetical protein compare
GFF2326 -1.2 -1.1 hypothetical protein compare
GFF2070 -1.2 -1.0 hypothetical protein compare
GFF4027 -1.1 -1.5 hypothetical protein compare
GFF311 -1.1 -2.5 hypothetical protein compare
GFF1806 -1.1 -1.2 33 kDa chaperonin compare
GFF3438 -1.1 -2.0 HTH-type transcriptional repressor NagR compare
GFF3050 -1.1 -1.6 Cold shock protein CspA compare
GFF3730 -1.1 -1.6 [Ribosomal protein S18]-alanine N-acetyltransferase compare
GFF1469 -1.1 -1.2 hypothetical protein compare
GFF4069 -1.1 -1.6 hypothetical protein compare
GFF110 -1.1 -1.5 Fluoroacetate dehalogenase compare
GFF1109 -1.1 -2.8 dTDP-4-oxo-6-deoxy-D-allose reductase compare
GFF2293 -1.1 -1.6 tRNA pseudouridine synthase B compare
GFF507 -1.0 -1.5 hypothetical protein compare
GFF1470 -1.0 -2.0 hypothetical protein compare
GFF1876 -1.0 -1.7 Aminomethyltransferase compare
GFF1818 -1.0 -2.5 D-3-phosphoglycerate dehydrogenase compare
GFF4872 -1.0 -1.4 hypothetical protein compare
GFF3560 -1.0 -1.8 NAD-specific glutamate dehydrogenase compare
GFF4410 -1.0 -2.1 Succinate--CoA ligase [ADP-forming] subunit beta compare
GFF1880 -1.0 -2.6 putative glycine dehydrogenase (decarboxylating) subunit 2 compare
GFF873 -1.0 -1.1 hypothetical protein compare
GFF684 -1.0 -1.2 hypothetical protein compare
GFF544 -1.0 -2.2 hypothetical protein compare
GFF1006 -1.0 -1.1 hypothetical protein compare
GFF2222 -1.0 -1.7 Farnesyl diphosphate synthase compare
GFF576 -1.0 -1.2 Transcriptional repressor NrdR compare
GFF2096 -1.0 -1.1 hypothetical protein compare
GFF3252 -1.0 -1.4 hypothetical protein compare
GFF1120 -0.9 -5.9 hypothetical protein compare
GFF4614 -0.9 -2.3 hypothetical protein compare
GFF73 -0.9 -1.7 hypothetical protein compare
GFF204 -0.9 -1.9 hypothetical protein compare
GFF4526 -0.9 -1.6 Sporulation initiation phosphotransferase F compare
GFF1032 -0.9 -2.2 hypothetical protein compare
GFF1264 -0.9 -1.3 hypothetical protein compare
GFF733 -0.9 -2.0 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
GFF1126 -0.9 -4.1 UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase compare
GFF1559 -0.9 -3.0 HTH-type transcriptional repressor CytR compare
GFF1662 -0.9 -1.9 hypothetical protein compare
GFF1060 -0.9 -1.3 putative protein RP812 compare
GFF1941 -0.9 -0.9 putative chaperone CsaA compare
GFF4117 -0.9 -1.1 hypothetical protein compare
GFF701 -0.9 -1.5 Heme A synthase compare
GFF816 -0.9 -0.9 Aliphatic sulfonates import ATP-binding protein SsuB compare
GFF2833 -0.9 -1.4 HTH-type transcriptional regulator LutR compare
GFF3261 -0.9 -1.9 Vitamin B12 import ATP-binding protein BtuD compare
GFF647 -0.9 -1.3 hypothetical protein compare
GFF545 -0.9 -1.1 hypothetical protein compare
GFF2288 -0.9 -1.3 Inner membrane protein YqjF compare
GFF1847 -0.9 -3.0 Quinolinate synthase A compare
GFF1718 -0.9 -2.0 Efflux pump periplasmic linker BepF compare
GFF2247 -0.8 -1.3 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial compare
GFF1339 -0.8 -2.0 ATP-dependent RNA helicase RhlE compare
GFF2733 -0.8 -0.9 hypothetical protein compare
GFF1289 -0.8 -2.7 hypothetical protein compare
GFF3072 -0.8 -1.4 hypothetical protein compare
GFF2157 -0.8 -1.1 hypothetical protein compare
GFF4662 -0.8 -2.3 hypothetical protein compare
GFF729 -0.8 -1.0 hypothetical protein compare
GFF1852 -0.8 -1.9 3-isopropylmalate dehydratase large subunit compare
GFF3855 -0.8 -1.9 5,6,7,8-tetrahydromethanopterin hydro-lyase compare
GFF1169 -0.8 -2.0 Protein RecA compare
GFF3619 -0.8 -1.6 hypothetical protein compare
GFF3579 -0.8 -1.6 hypothetical protein compare
GFF620 -0.8 -1.0 Pyridoxine 5'-phosphate synthase compare
GFF106 -0.8 -1.4 Copper-sensing transcriptional repressor CsoR compare
GFF1654 -0.8 -3.9 Bifunctional chorismate mutase/prephenate dehydratase compare
GFF745 -0.8 -2.3 hypothetical protein compare
GFF3683 -0.8 -2.1 Lactate utilization protein A compare
GFF4250 -0.8 -1.3 hypothetical protein compare
GFF4887 -0.8 -2.0 hypothetical protein compare
GFF2473 -0.8 -2.8 NAD(P) transhydrogenase subunit beta compare
GFF4794 -0.8 -2.5 hypothetical protein compare
GFF3750 -0.8 -2.5 LL-diaminopimelate aminotransferase compare
GFF4124 -0.8 -1.0 hypothetical protein compare
GFF2118 -0.8 -1.5 hypothetical protein compare
GFF2026 -0.8 -1.7 Photosynthetic apparatus regulatory protein RegA compare
GFF1302 -0.8 -1.9 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
GFF2541 -0.7 -1.5 hypothetical protein compare
GFF14 -0.7 -2.5 hypothetical protein compare
GFF4509 -0.7 -2.4 hypothetical protein compare
GFF2131 -0.7 -0.8 hypothetical protein compare
GFF2871 -0.7 -1.8 HTH-type transcriptional repressor GlaR compare
GFF185 -0.7 -2.4 hypothetical protein compare
GFF1002 -0.7 -1.4 hypothetical protein compare
GFF610 -0.7 -1.8 Foldase protein PrsA compare
GFF1121 -0.7 -3.0 hypothetical protein compare
GFF4639 -0.7 -3.0 Cell division protein ZapE compare
GFF2366 -0.7 -1.3 hypothetical protein compare
GFF1535 -0.7 -1.0 hypothetical protein compare
GFF3000 -0.7 -1.4 hypothetical protein compare
GFF2878 -0.7 -0.8 hypothetical protein compare
GFF3353 -0.7 -1.0 hypothetical protein compare
GFF2145 -0.7 -1.2 hypothetical protein compare
GFF3040 -0.7 -2.0 L-threonate dehydrogenase compare
GFF2312 -0.7 -1.7 hypothetical protein compare
GFF456 -0.7 -2.0 Bicarbonate transport ATP-binding protein CmpD compare
GFF2816 -0.7 -2.3 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
GFF2752 -0.7 -1.6 putative siderophore-binding lipoprotein YfiY compare
GFF4468 -0.7 -0.9 Vitamin B12 import ATP-binding protein BtuD compare
GFF612 -0.7 -1.4 Malyl-CoA/beta-methylmalyl-CoA/citramalyl-CoA lyase compare
GFF1015 -0.7 -1.3 hypothetical protein compare
GFF2182 -0.7 -0.7 hypothetical protein compare
GFF3300 -0.7 -0.7 Arsenate reductase compare
GFF453 -0.7 -1.9 Transcriptional regulatory protein tctD compare
GFF1686 -0.7 -1.0 hypothetical protein compare
GFF1966 -0.7 -1.2 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
GFF2882 -0.7 -1.6 hypothetical protein compare
GFF3722 -0.7 -1.9 hypothetical protein compare
GFF3707 -0.7 -3.0 hypothetical protein compare
GFF4857 -0.7 -1.7 hypothetical protein compare
GFF183 -0.7 -2.5 Putative acyltransferase compare
GFF2294 -0.7 -0.8 30S ribosome-binding factor compare
GFF761 -0.6 -0.8 Lipopolysaccharide export system ATP-binding protein LptB compare
GFF1694 -0.6 -1.7 Sulfurtransferase compare
GFF1908 -0.6 -2.0 hypothetical protein compare
GFF1747 -0.6 -1.7 hypothetical protein compare
GFF3439 -0.6 -1.2 Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG compare
GFF841 -0.6 -1.1 RNA-binding protein Hfq compare
GFF4565 -0.6 -0.7 hypothetical protein compare
GFF1066 -0.6 -1.2 hypothetical protein compare
GFF3070 -0.6 -1.3 hypothetical protein compare
GFF4697 -0.6 -1.4 Formate dehydrogenase-O major subunit compare
GFF2241 -0.6 -1.5 Periplasmic [NiFeSe] hydrogenase large subunit compare
GFF4246 -0.6 -1.0 Pyrrolidone-carboxylate peptidase compare
GFF1787 -0.6 -1.7 HTH-type transcriptional regulator HdfR compare
GFF2231 -0.6 -1.0 Chaperone protein DnaJ compare
GFF66 -0.6 -1.1 Methionine aminopeptidase compare
GFF4520 -0.6 -2.8 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
GFF239 -0.6 -0.8 hypothetical protein compare
GFF2010 -0.6 -2.6 5-(hydroxymethyl)furfural oxidase compare
GFF103 -0.6 -1.2 Glutaredoxin 3 compare
GFF629 -0.6 -1.9 hypothetical protein compare
GFF4855 -0.6 -2.4 hypothetical protein compare
GFF637 -0.6 -1.1 Vitamin B12-binding protein compare
GFF4095 -0.6 -1.7 Bicarbonate transport ATP-binding protein CmpD compare
GFF2493 -0.6 -1.6 Beta-methylmalyl-CoA dehydratase compare
GFF1194 -0.6 -2.0 hypothetical protein compare
GFF4300 -0.6 -3.1 hypothetical protein compare
GFF4290 -0.6 -0.7 Peroxiredoxin OsmC compare
GFF1462 -0.6 -2.9 hypothetical protein compare
GFF74 -0.6 -0.7 hypothetical protein compare
GFF4814 -0.6 -1.7 hypothetical protein compare
GFF4070 -0.6 -1.8 Fumarate reductase iron-sulfur subunit compare
GFF1187 -0.6 -2.2 Disulfide-bond oxidoreductase YfcG compare
GFF3214 -0.6 -1.0 Dihydroanticapsin 7-dehydrogenase compare
GFF2484 -0.6 -2.9 lipid II flippase MurJ compare
GFF563 -0.6 -1.0 hypothetical protein compare
GFF3433 -0.6 -0.9 Phosphate-import ATP-binding protein PhnC compare
GFF923 -0.6 -1.9 hypothetical protein compare
GFF3625 -0.6 -1.4 Fe(3+) dicitrate transport ATP-binding protein FecE compare
GFF1301 -0.6 -0.8 hypothetical protein compare
GFF32 -0.6 -1.1 Acetolactate synthase large subunit IlvG compare
GFF2597 -0.6 -4.2 hypothetical protein compare
GFF149 -0.6 -1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Xanthobacter sp. DMC5 in carbon source experiments

For carbon source Sodium D,L-Lactate across organisms