Experiment set1S60 for Xanthobacter sp. DMC5

Compare to:

Sodium D,L-Lactate and casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
GFF1006 -4.4 -3.0 hypothetical protein compare
GFF718 -3.5 -2.4 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha compare
GFF2222 -2.7 -3.3 Farnesyl diphosphate synthase compare
GFF310 -2.1 -2.0 hypothetical protein compare
GFF1852 -2.1 -4.4 3-isopropylmalate dehydratase large subunit compare
GFF1847 -1.9 -6.8 Quinolinate synthase A compare
GFF949 -1.7 -3.0 Peptidyl-prolyl cis-trans isomerase D compare
GFF1109 -1.7 -5.3 dTDP-4-oxo-6-deoxy-D-allose reductase compare
GFF1695 -1.6 -5.6 3-isopropylmalate dehydrogenase compare
GFF1654 -1.6 -7.5 Bifunctional chorismate mutase/prephenate dehydratase compare
GFF3124 -1.5 -2.0 hypothetical protein compare
GFF841 -1.5 -2.2 RNA-binding protein Hfq compare
GFF917 -1.5 -6.7 hypothetical protein compare
GFF1776 -1.4 -2.3 hypothetical protein compare
GFF2207 -1.4 -1.5 hypothetical protein compare
GFF684 -1.4 -1.6 hypothetical protein compare
GFF2987 -1.3 -2.1 hypothetical protein compare
GFF1435 -1.3 -1.4 Beta-ketoadipyl-CoA thiolase compare
GFF1843 -1.3 -1.6 3-isopropylmalate dehydratase small subunit 1 compare
GFF3722 -1.3 -2.8 hypothetical protein compare
GFF4872 -1.2 -1.1 hypothetical protein compare
GFF2182 -1.2 -1.3 hypothetical protein compare
GFF543 -1.2 -1.4 hypothetical protein compare
GFF1470 -1.2 -2.1 hypothetical protein compare
GFF4145 -1.2 -2.5 Ribosomal RNA small subunit methyltransferase A compare
GFF2546 -1.2 -2.1 hypothetical protein compare
GFF4576 -1.1 -1.3 hypothetical protein compare
GFF3560 -1.1 -2.3 NAD-specific glutamate dehydrogenase compare
GFF2973 -1.1 -2.7 Anti-sigma-F factor NrsF compare
GFF2508 -1.1 -3.7 Ribosomal large subunit pseudouridine synthase D compare
GFF3050 -1.1 -1.9 Cold shock protein CspA compare
GFF725 -1.1 -3.5 Dihydrolipoyl dehydrogenase compare
GFF2294 -1.1 -1.3 30S ribosome-binding factor compare
GFF4124 -1.0 -1.5 hypothetical protein compare
GFF2310 -1.0 -1.4 hypothetical protein compare
GFF3730 -1.0 -1.7 [Ribosomal protein S18]-alanine N-acetyltransferase compare
GFF1126 -1.0 -5.4 UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase compare
GFF1818 -1.0 -2.8 D-3-phosphoglycerate dehydrogenase compare
GFF3399 -1.0 -2.2 hypothetical protein compare
GFF4723 -1.0 -2.3 Multidrug resistance ABC transporter ATP-binding/permease protein BmrA compare
GFF1862 -1.0 -2.8 hypothetical protein compare
GFF3045 -1.0 -1.4 hypothetical protein compare
GFF1261 -1.0 -1.1 hypothetical protein compare
GFF4258 -1.0 -1.7 Pyridoxine/pyridoxamine 5'-phosphate oxidase compare
GFF2471 -1.0 -1.2 NAD(P) transhydrogenase subunit alpha part 1 compare
GFF4569 -1.0 -1.9 Limonene 1,2-monooxygenase compare
GFF1550 -0.9 -2.9 hypothetical protein compare
GFF1135 -0.9 -2.3 hypothetical protein compare
GFF1121 -0.9 -4.2 hypothetical protein compare
GFF204 -0.9 -1.6 hypothetical protein compare
GFF4384 -0.9 -2.0 hypothetical protein compare
GFF1848 -0.9 -2.2 L-aspartate oxidase compare
GFF4076 -0.9 -3.5 (S)-sulfolactate dehydrogenase compare
GFF73 -0.9 -1.5 hypothetical protein compare
GFF3917 -0.9 -1.4 hypothetical protein compare
GFF4364 -0.9 -1.2 hypothetical protein compare
GFF2516 -0.9 -1.0 Dihydroanticapsin 7-dehydrogenase compare
GFF3072 -0.9 -1.5 hypothetical protein compare
GFF3526 -0.9 -1.8 NAD-dependent malic enzyme compare
GFF1791 -0.9 -1.6 Inner membrane protein YhaH compare
GFF1088 -0.9 -1.0 hypothetical protein compare
GFF4662 -0.9 -2.1 hypothetical protein compare
GFF4485 -0.9 -2.0 hypothetical protein compare
GFF1159 -0.9 -1.3 Trigger factor compare
GFF257 -0.8 -4.5 Phosphomethylpyrimidine synthase compare
GFF287 -0.8 -1.8 hypothetical protein compare
GFF2400 -0.8 -2.9 2-isopropylmalate synthase compare
GFF813 -0.8 -2.0 hypothetical protein compare
GFF4421 -0.8 -0.9 Corrinoid adenosyltransferase compare
GFF4388 -0.8 -3.3 hypothetical protein compare
GFF2889 -0.8 -1.6 Lipopolysaccharide export system ATP-binding protein LptB compare
GFF611 -0.8 -2.4 Heat shock protein HspQ compare
GFF2177 -0.8 -3.9 Putative L-lactate dehydrogenase operon regulatory protein compare
GFF1849 -0.8 -1.6 putative nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
GFF2358 -0.8 -2.5 hypothetical protein compare
GFF2472 -0.8 -2.1 hypothetical protein compare
GFF3061 -0.8 -1.2 hypothetical protein compare
GFF1796 -0.8 -1.1 hypothetical protein compare
GFF2467 -0.8 -1.3 hypothetical protein compare
GFF1120 -0.8 -5.5 hypothetical protein compare
GFF576 -0.8 -1.2 Transcriptional repressor NrdR compare
GFF4646 -0.8 -2.0 DNA gyrase inhibitor YacG compare
GFF3880 -0.8 -2.1 hypothetical protein compare
GFF1030 -0.8 -1.3 HTH-type transcriptional regulator SutR compare
GFF522 -0.8 -1.1 30S ribosomal protein S2 compare
GFF3456 -0.7 -1.2 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
GFF3693 -0.7 -4.0 Lactate utilization protein A compare
GFF4715 -0.7 -1.8 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase compare
GFF490 -0.7 -1.0 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
GFF2003 -0.7 -1.2 6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha compare
GFF2100 -0.7 -2.0 hypothetical protein compare
GFF3948 -0.7 -1.6 Ribosomal silencing factor RsfS compare
GFF1175 -0.7 -2.3 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
GFF2497 -0.7 -1.2 (3S)-malyl-CoA thioesterase compare
GFF4685 -0.7 -0.9 HTH-type transcriptional regulator HdfR compare
GFF4606 -0.7 -2.5 Benzaldehyde dehydrogenase YfmT compare
GFF3654 -0.7 -1.7 hypothetical protein compare
GFF4086 -0.7 -1.4 hypothetical protein compare
GFF3736 -0.7 -1.7 7-methyl-GTP pyrophosphatase compare
GFF3592 -0.7 -1.0 hypothetical protein compare
GFF2272 -0.7 -1.4 hypothetical protein compare
GFF2314 -0.7 -1.0 (R)-benzylsuccinyl-CoA dehydrogenase compare
GFF3579 -0.7 -1.6 hypothetical protein compare
GFF4796 -0.7 -1.5 Electron transfer flavoprotein subunit beta compare
GFF4540 -0.7 -1.2 HTH-type transcriptional repressor NicR compare
GFF140 -0.7 -1.4 hypothetical protein compare
GFF941 -0.7 -1.6 L-lysine 2,3-aminomutase compare
GFF4100 -0.7 -0.9 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
GFF3499 -0.7 -1.3 hypothetical protein compare
GFF4508 -0.7 -0.9 flagellum biosynthesis repressor protein FlbT compare
GFF2091 -0.7 -1.8 hypothetical protein compare
GFF110 -0.7 -1.5 Fluoroacetate dehalogenase compare
GFF878 -0.7 -2.0 hypothetical protein compare
GFF2672 -0.7 -2.1 hypothetical protein compare
GFF106 -0.7 -1.3 Copper-sensing transcriptional repressor CsoR compare
GFF2473 -0.7 -3.2 NAD(P) transhydrogenase subunit beta compare
GFF4566 -0.7 -1.3 Acyl carrier protein compare
GFF375 -0.7 -1.3 hypothetical protein compare
GFF3438 -0.6 -1.6 HTH-type transcriptional repressor NagR compare
GFF3326 -0.6 -1.3 Putative aliphatic sulfonates transport permease protein SsuC compare
GFF4633 -0.6 -2.8 Protein ApaG compare
GFF4891 -0.6 -0.8 Ferredoxin-like protein FixX compare
GFF2045 -0.6 -1.0 tRNA pseudouridine synthase A compare
GFF608 -0.6 -1.1 hypothetical protein compare
GFF4634 -0.6 -1.5 O-succinylhomoserine sulfhydrylase compare
GFF3689 -0.6 -2.4 Inner membrane protein YgaZ compare
GFF1768 -0.6 -0.9 Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB compare
GFF1110 -0.6 -2.9 hypothetical protein compare
GFF267 -0.6 -3.7 (R)-citramalate synthase compare
GFF4916 -0.6 -0.7 Transcriptional regulatory protein OmpR compare
GFF3024 -0.6 -1.2 hypothetical protein compare
GFF4679 -0.6 -2.0 hypothetical protein compare
GFF4528 -0.6 -1.0 hypothetical protein compare
GFF2764 -0.6 -2.1 HTH-type transcriptional regulator McbR compare
GFF2597 -0.6 -4.8 hypothetical protein compare
GFF1118 -0.6 -2.7 Ferredoxin--NADP reductase compare
GFF2988 -0.6 -1.3 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
GFF1194 -0.6 -1.9 hypothetical protein compare
GFF2410 -0.6 -1.7 ATP-dependent protease ATPase subunit HslU compare
GFF1896 -0.6 -1.7 hypothetical protein compare
GFF2160 -0.6 -1.5 Adaptive-response sensory-kinase SasA compare
GFF2465 -0.6 -0.8 hypothetical protein compare
GFF4793 -0.6 -1.6 hypothetical protein compare
GFF1741 -0.6 -2.3 Adaptive-response sensory-kinase SasA compare
GFF4784 -0.6 -2.0 hypothetical protein compare
GFF2967 -0.6 -1.1 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
GFF4188 -0.6 -0.8 hypothetical protein compare
GFF438 -0.6 -2.5 D-alanine aminotransferase compare
GFF264 -0.6 -0.9 hypothetical protein compare
GFF898 -0.6 -2.3 Urease accessory protein UreF compare
GFF297 -0.6 -1.9 hypothetical protein compare
GFF1899 -0.6 -1.2 Putative anti-sigma factor antagonist BtrV compare
GFF4397 -0.6 -1.6 hypothetical protein compare
GFF3846 -0.6 -1.6 hypothetical protein compare
GFF3446 -0.6 -1.3 Ribose 1,5-bisphosphate phosphokinase PhnN compare
GFF4255 -0.6 -1.6 (R)-specific enoyl-CoA hydratase compare
GFF1879 -0.6 -2.2 putative glycine dehydrogenase (decarboxylating) subunit 1 compare
GFF271 -0.5 -2.1 HTH-type transcriptional repressor KstR2 compare
GFF2595 -0.5 -3.3 hypothetical protein compare
GFF3440 -0.5 -1.7 Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH compare
GFF359 -0.5 -1.0 hypothetical protein compare
GFF2237 -0.5 -1.5 Alpha-ketoglutarate-dependent dioxygenase AlkB compare
GFF539 -0.5 -0.6 hypothetical protein compare
GFF1519 -0.5 -2.2 Betaine aldehyde dehydrogenase compare
GFF1693 -0.5 -1.3 hypothetical protein compare
GFF2176 -0.5 -2.7 L-lactate dehydrogenase compare
GFF2131 -0.5 -0.8 hypothetical protein compare
GFF1133 -0.5 -2.7 hypothetical protein compare
GFF4597 -0.5 -1.7 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinX compare
GFF3890 -0.5 -1.0 Trehalose-6-phosphate synthase compare
GFF4468 -0.5 -0.9 Vitamin B12 import ATP-binding protein BtuD compare
GFF1052 -0.5 -1.4 putative manganese efflux pump MntP compare
GFF4061 -0.5 -0.7 hypothetical protein compare
GFF3007 -0.5 -1.1 Short-chain-enoyl-CoA hydratase compare
GFF877 -0.5 -1.3 hypothetical protein compare
GFF1707 -0.5 -2.0 Putative aminoacrylate peracid reductase RutC compare
GFF4062 -0.5 -1.9 hypothetical protein compare
GFF4015 -0.5 -1.8 Sensor histidine kinase RcsC compare
GFF1406 -0.5 -1.4 RNA polymerase sigma-H factor compare
GFF1909 -0.5 -3.9 hypothetical protein compare
GFF617 -0.5 -1.1 putative oxidoreductase YgfF compare
GFF761 -0.5 -1.2 Lipopolysaccharide export system ATP-binding protein LptB compare
GFF719 -0.5 -0.9 hypothetical protein compare
GFF3915 -0.5 -1.8 Low affinity potassium transport system protein kup compare
GFF3897 -0.5 -1.5 hypothetical protein compare
GFF682 -0.5 -1.8 hypothetical protein compare
GFF2907 -0.5 -0.8 HTH-type transcriptional regulator DmlR compare
GFF2145 -0.5 -1.1 hypothetical protein compare
GFF4747 -0.5 -2.5 hypothetical protein compare
GFF3692 -0.5 -1.3 hypothetical protein compare
GFF2647 -0.5 -2.7 HTH-type transcriptional regulator DmlR compare
GFF1324 -0.5 -1.1 Fructose-1,6-bisphosphatase class 2 compare
GFF1264 -0.5 -1.0 hypothetical protein compare
GFF4051 -0.5 -1.4 hypothetical protein compare
GFF1716 -0.5 -1.5 hypothetical protein compare
GFF2745 -0.5 -1.4 Iron(3+)-hydroxamate import ATP-binding protein FhuC compare
GFF3033 -0.5 -1.8 hypothetical protein compare
GFF720 -0.5 -0.9 1-deoxy-D-xylulose-5-phosphate synthase compare
GFF3539 -0.5 -1.5 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase compare
GFF196 -0.5 -1.6 Hydantoin racemase compare


Specific Phenotypes

None in this experiment

For Xanthobacter sp. DMC5 in carbon source experiments

For carbon source Sodium D,L-Lactate across organisms