Experiment set1S598 for Mucilaginibacter yixingensis YX-36 DSM 26809

Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=7_days

Group: in planta
Media: + Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=7_days
Culturing: Mucilaginibacter_YX36_ML5a, at 26 (C), (Solid)
By: Marta Torres on 4/20/23

Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=7_days in Mucilaginibacter yixingensis YX-36 DSM 26809

For in planta Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=7_days across organisms

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Arginine and proline metabolism
• Pentose phosphate pathway
• Pentose and glucuronate interconversions
• Glyoxylate and dicarboxylate metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
Entner-Doudoroff shunt	2	1	1
D-glucosaminate degradation	3	1	1
D-fructuronate degradation	4	4	1
D-galacturonate degradation I	5	5	1
trans-4-hydroxy-L-proline degradation I	5	4	1
4-deoxy-L-threo-hex-4-enopyranuronate degradation	5	3	1
superpathway of β-D-glucuronosides degradation	7	7	1
3,6-anhydro-α-L-galactopyranose degradation	7	3	1
Entner-Doudoroff pathway I	9	8	1
Entner-Doudoroff pathway III (semi-phosphorylative)	9	6	1
superpathway of hexuronide and hexuronate degradation	10	10	1
superpathway of glycolysis and the Entner-Doudoroff pathway	17	15	1
superpathway of microbial D-galacturonate and D-glucuronate degradation	31	13	1