Experiment set1S59 for Xanthobacter sp. DMC5

Compare to:

Methanol and casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
GFF3698 -3.8 -3.6 hypothetical protein compare
GFF3703 -3.6 -3.5 Formyltransferase/hydrolase complex subunit D compare
GFF917 -2.8 -11.4 hypothetical protein compare
GFF1695 -2.8 -8.1 3-isopropylmalate dehydrogenase compare
GFF3704 -2.5 -5.7 Formyltransferase/hydrolase complex Fhc subunit A compare
GFF1002 -2.4 -4.2 hypothetical protein compare
GFF1843 -2.1 -2.5 3-isopropylmalate dehydratase small subunit 1 compare
GFF3700 -2.1 -5.1 hypothetical protein compare
GFF1264 -2.1 -2.6 hypothetical protein compare
GFF1849 -2.0 -3.4 putative nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
GFF1087 -1.9 -5.9 Glutamate racemase compare
GFF1006 -1.9 -2.8 hypothetical protein compare
GFF1109 -1.9 -7.1 dTDP-4-oxo-6-deoxy-D-allose reductase compare
GFF257 -1.9 -9.2 Phosphomethylpyrimidine synthase compare
GFF1852 -1.8 -3.9 3-isopropylmalate dehydratase large subunit compare
GFF1768 -1.7 -2.0 Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB compare
GFF1847 -1.6 -6.2 Quinolinate synthase A compare
GFF4224 -1.6 -3.0 hypothetical protein compare
GFF3699 -1.6 -6.9 hypothetical protein compare
GFF1135 -1.5 -2.7 hypothetical protein compare
GFF3742 -1.5 -3.0 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
GFF841 -1.4 -2.5 RNA-binding protein Hfq compare
GFF3722 -1.3 -3.3 hypothetical protein compare
GFF204 -1.3 -2.0 hypothetical protein compare
GFF3730 -1.3 -2.4 [Ribosomal protein S18]-alanine N-acetyltransferase compare
GFF295 -1.2 -3.6 hypothetical protein compare
GFF4061 -1.2 -1.4 hypothetical protein compare
GFF3579 -1.2 -3.3 hypothetical protein compare
GFF1138 -1.2 -2.9 hypothetical protein compare
GFF4027 -1.2 -1.8 hypothetical protein compare
GFF348 -1.2 -1.8 Putative hydrolase MhqD compare
GFF3048 -1.2 -2.1 Riboflavin transport system permease protein RibX compare
GFF3697 -1.1 -1.9 Methenyltetrahydromethanopterin cyclohydrolase compare
GFF2442 -1.1 -6.6 Fructose-bisphosphate aldolase compare
GFF1993 -1.1 -1.7 hypothetical protein compare
GFF1120 -1.1 -7.7 hypothetical protein compare
GFF3560 -1.1 -2.6 NAD-specific glutamate dehydrogenase compare
GFF1159 -1.1 -2.2 Trigger factor compare
GFF1121 -1.1 -5.9 hypothetical protein compare
GFF3070 -1.1 -3.7 hypothetical protein compare
GFF663 -1.1 -1.4 Lipopolysaccharide export system ATP-binding protein LptB compare
GFF2516 -1.0 -1.3 Dihydroanticapsin 7-dehydrogenase compare
GFF522 -1.0 -2.2 30S ribosomal protein S2 compare
GFF4258 -1.0 -1.5 Pyridoxine/pyridoxamine 5'-phosphate oxidase compare
GFF3688 -1.0 -1.8 hypothetical protein compare
GFF1019 -1.0 -2.0 Putative amino-acid ABC transporter-binding protein YhdW compare
GFF3427 -1.0 -5.4 Glutamine-dependent NAD(+) synthetase compare
GFF4399 -1.0 -6.6 hypothetical protein compare
GFF146 -1.0 -2.2 hypothetical protein compare
GFF2936 -1.0 -1.0 D-methionine transport system permease protein MetI compare
GFF2973 -1.0 -3.0 Anti-sigma-F factor NrsF compare
GFF4526 -1.0 -2.2 Sporulation initiation phosphotransferase F compare
GFF4087 -0.9 -2.5 HTH-type transcriptional repressor CytR compare
GFF3471 -0.9 -2.4 hypothetical protein compare
GFF729 -0.9 -1.4 hypothetical protein compare
GFF4540 -0.9 -2.0 HTH-type transcriptional repressor NicR compare
GFF1310 -0.9 -3.5 hypothetical protein compare
GFF1797 -0.9 -4.7 Biosynthetic peptidoglycan transglycosylase compare
GFF4384 -0.8 -2.9 hypothetical protein compare
GFF718 -0.8 -1.6 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha compare
GFF816 -0.8 -1.1 Aliphatic sulfonates import ATP-binding protein SsuB compare
GFF3140 -0.8 -1.8 hypothetical protein compare
GFF1654 -0.8 -5.0 Bifunctional chorismate mutase/prephenate dehydratase compare
GFF2316 -0.8 -4.8 Sensor histidine kinase RcsC compare
GFF2222 -0.8 -2.0 Farnesyl diphosphate synthase compare
GFF4917 -0.8 -1.1 hypothetical protein compare
GFF2031 -0.8 -1.8 hypothetical protein compare
GFF1924 -0.8 -1.0 hypothetical protein compare
GFF3326 -0.8 -2.1 Putative aliphatic sulfonates transport permease protein SsuC compare
GFF2672 -0.8 -2.8 hypothetical protein compare
GFF3872 -0.8 -1.4 Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase compare
GFF888 -0.8 -1.2 hypothetical protein compare
GFF1189 -0.7 -2.7 hypothetical protein compare
GFF3557 -0.7 -2.1 Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA compare
GFF4559 -0.7 -2.3 hypothetical protein compare
GFF3640 -0.7 -6.3 hypothetical protein compare
GFF719 -0.7 -1.3 hypothetical protein compare
GFF2285 -0.7 -1.8 Sensor histidine kinase RegB compare
GFF2447 -0.7 -3.3 Ribulose bisphosphate carboxylase small chain compare
GFF1559 -0.7 -2.9 HTH-type transcriptional repressor CytR compare
GFF1126 -0.7 -4.1 UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase compare
GFF4069 -0.7 -1.5 hypothetical protein compare
GFF1263 -0.7 -2.5 Cytochrome c oxidase assembly protein CtaG compare
GFF2294 -0.7 -1.2 30S ribosome-binding factor compare
GFF110 -0.7 -1.4 Fluoroacetate dehalogenase compare
GFF1265 -0.7 -2.7 Protoheme IX farnesyltransferase compare
GFF4583 -0.7 -5.7 hypothetical protein compare
GFF2045 -0.7 -1.2 tRNA pseudouridine synthase A compare
GFF1233 -0.7 -2.4 hypothetical protein compare
GFF1260 -0.7 -1.7 hypothetical protein compare
GFF2527 -0.7 -1.1 hypothetical protein compare
GFF1926 -0.7 -1.4 hypothetical protein compare
GFF106 -0.7 -1.2 Copper-sensing transcriptional repressor CsoR compare
GFF1896 -0.7 -1.8 hypothetical protein compare
GFF3131 -0.7 -1.4 hypothetical protein compare
GFF3937 -0.7 -1.5 hypothetical protein compare
GFF4812 -0.6 -2.7 HTH-type transcriptional repressor AllR compare
GFF1110 -0.6 -3.7 hypothetical protein compare
GFF4077 -0.6 -1.1 (2R)-3-sulfolactate dehydrogenase (NADP(+)) compare
GFF1898 -0.6 -1.9 Elongation factor P--(R)-beta-lysine ligase compare
GFF3457 -0.6 -1.2 Shikimate dehydrogenase (NADP(+)) compare
GFF3214 -0.6 -1.1 Dihydroanticapsin 7-dehydrogenase compare
GFF1425 -0.6 -2.9 hypothetical protein compare
GFF4496 -0.6 -1.7 Flagellar motor switch protein FliG compare
GFF2896 -0.6 -2.5 hypothetical protein compare
GFF4769 -0.6 -0.8 putative enoyl-CoA hydratase echA8 compare
GFF1909 -0.6 -4.7 hypothetical protein compare
GFF211 -0.6 -1.7 NADH-quinone oxidoreductase subunit E compare
GFF3441 -0.6 -1.9 Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI compare
GFF2364 -0.6 -1.2 hypothetical protein compare
GFF3553 -0.6 -3.8 hypothetical protein compare
GFF4462 -0.6 -3.1 RNA pyrophosphohydrolase compare
GFF3319 -0.6 -3.7 hypothetical protein compare
GFF4421 -0.6 -0.9 Corrinoid adenosyltransferase compare
GFF3526 -0.6 -1.5 NAD-dependent malic enzyme compare
GFF2358 -0.6 -2.3 hypothetical protein compare
GFF1127 -0.6 -3.8 UDP-N-acetylglucosamine 4-epimerase compare
GFF4246 -0.6 -1.5 Pyrrolidone-carboxylate peptidase compare
GFF3860 -0.6 -1.3 Hydrazine synthase subunit beta compare
GFF3720 -0.6 -2.5 PhoH-like protein compare
GFF3050 -0.6 -1.2 Cold shock protein CspA compare
GFF540 -0.6 -3.1 hypothetical protein compare
GFF1258 -0.6 -1.8 hypothetical protein compare
GFF3859 -0.6 -2.7 hypothetical protein compare
GFF4741 -0.6 -2.1 hypothetical protein compare
GFF4426 -0.5 -1.8 Protein YhgF compare
GFF2988 -0.5 -1.6 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
GFF2207 -0.5 -0.8 hypothetical protein compare
GFF1787 -0.5 -1.8 HTH-type transcriptional regulator HdfR compare
GFF3556 -0.5 -2.2 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
GFF4188 -0.5 -1.2 hypothetical protein compare
GFF3492 -0.5 -0.8 hypothetical protein compare
GFF2118 -0.5 -1.1 hypothetical protein compare
GFF1870 -0.5 -1.4 DNA repair protein RadA compare
GFF4155 -0.5 -1.3 hypothetical protein compare
GFF4466 -0.5 -1.9 hypothetical protein compare
GFF1739 -0.5 -3.8 Putrescine-binding periplasmic protein SpuD compare
GFF331 -0.5 -1.4 hypothetical protein compare
GFF2543 -0.5 -2.3 hypothetical protein compare
GFF1271 -0.5 -1.2 hypothetical protein compare
GFF3862 -0.5 -3.6 hypothetical protein compare
GFF2463 -0.5 -3.6 Gamma-glutamylputrescine oxidoreductase compare
GFF4916 -0.5 -1.4 Transcriptional regulatory protein OmpR compare
GFF3921 -0.5 -0.9 Small heat shock protein IbpA compare
GFF2400 -0.5 -2.2 2-isopropylmalate synthase compare
GFF1869 -0.5 -1.2 hypothetical protein compare
GFF111 -0.5 -1.4 hypothetical protein compare
GFF898 -0.5 -2.0 Urease accessory protein UreF compare
GFF923 -0.5 -2.5 hypothetical protein compare
GFF1299 -0.5 -2.2 hypothetical protein compare
GFF4335 -0.5 -2.5 L-arabonate dehydratase compare
GFF3802 -0.5 -2.2 Phenylacetate-coenzyme A ligase compare
GFF3761 -0.5 -1.4 Transcriptional regulator MraZ compare
GFF2470 -0.5 -1.2 hypothetical protein compare
GFF2510 -0.5 -2.2 Regulator of RpoS compare
GFF4436 -0.5 -1.7 hypothetical protein compare
GFF3364 -0.5 -2.5 Ureidoglycolate lyase compare
GFF3602 -0.5 -1.7 hypothetical protein compare
GFF4547 -0.5 -2.0 2-hydroxy-3-oxopropionate reductase compare
GFF416 -0.5 -1.6 hypothetical protein compare
GFF1907 -0.5 -2.6 hypothetical protein compare
GFF4651 -0.5 -2.4 Putrescine--pyruvate aminotransferase compare
GFF4161 -0.5 -3.0 hypothetical protein compare
GFF4156 -0.5 -1.1 Glyoxylate/hydroxypyruvate reductase B compare
GFF830 -0.5 -1.9 hypothetical protein compare
GFF3844 -0.5 -1.4 hypothetical protein compare
GFF1266 -0.5 -3.0 Cytochrome c oxidase subunit 1 compare
GFF734 -0.5 -1.7 putative amino-acid import ATP-binding protein YxeO compare
GFF3909 -0.5 -1.9 hypothetical protein compare
GFF4612 -0.5 -1.9 Futalosine hydrolase compare
GFF3714 -0.5 -1.0 Protein-export protein SecB compare
GFF2967 -0.5 -1.0 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
GFF45 -0.5 -3.1 Spermidine/putrescine import ATP-binding protein PotA compare
GFF4189 -0.5 -1.8 Electron transfer flavoprotein subunit beta compare
GFF4710 -0.5 -2.4 Sodium/glutamate symporter compare
GFF66 -0.5 -1.3 Methionine aminopeptidase compare
GFF1864 -0.5 -1.8 hypothetical protein compare
GFF1876 -0.5 -1.7 Aminomethyltransferase compare
GFF4524 -0.5 -1.3 Regulator of RpoS compare
GFF2517 -0.5 -1.1 HTH-type transcriptional regulator McbR compare
GFF3809 -0.5 -2.4 hypothetical protein compare
GFF4302 -0.5 -1.8 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
GFF3232 -0.5 -1.1 6-phosphogluconolactonase compare
GFF3649 -0.5 -1.8 hypothetical protein compare
GFF537 -0.5 -2.3 Molybdenum cofactor guanylyltransferase compare
GFF873 -0.5 -0.8 hypothetical protein compare
GFF3493 -0.5 -2.0 hypothetical protein compare
GFF160 -0.5 -3.6 Acetyl-coenzyme A synthetase compare
GFF1715 -0.5 -1.4 hypothetical protein compare
GFF3104 -0.5 -1.0 Biosynthetic peptidoglycan transglycosylase compare
GFF3245 -0.5 -2.0 Putative cysteine protease YraA compare
GFF107 -0.5 -1.2 Ribosomal RNA small subunit methyltransferase D compare
GFF1066 -0.4 -1.0 hypothetical protein compare
GFF665 -0.4 -1.9 hypothetical protein compare
GFF3446 -0.4 -1.4 Ribose 1,5-bisphosphate phosphokinase PhnN compare
GFF101 -0.4 -1.4 hypothetical protein compare
GFF2506 -0.4 -1.6 Lon protease 2 compare
GFF140 -0.4 -1.5 hypothetical protein compare
GFF209 -0.4 -3.7 Putative formate dehydrogenase compare
GFF1188 -0.4 -1.8 HTH-type transcriptional repressor ComR compare


Specific Phenotypes

None in this experiment

For Xanthobacter sp. DMC5 in carbon source experiments

For carbon source Methanol across organisms