Experiment set1S58 for Xanthobacter sp. DMC5

Compare to:

Methanol and casamino acids carbon source

200 most important genes:

  gene name fitness t score description  
GFF3704 -3.7 -6.0 Formyltransferase/hydrolase complex Fhc subunit A compare
GFF3700 -3.2 -5.2 hypothetical protein compare
GFF917 -2.8 -10.1 hypothetical protein compare
GFF1852 -2.7 -5.0 3-isopropylmalate dehydratase large subunit compare
GFF3698 -2.6 -3.1 hypothetical protein compare
GFF1002 -2.6 -2.7 hypothetical protein compare
GFF1843 -2.6 -3.8 3-isopropylmalate dehydratase small subunit 1 compare
GFF522 -2.4 -3.2 30S ribosomal protein S2 compare
GFF3703 -2.4 -2.8 Formyltransferase/hydrolase complex subunit D compare
GFF3104 -2.4 -2.8 Biosynthetic peptidoglycan transglycosylase compare
GFF1695 -2.4 -6.9 3-isopropylmalate dehydrogenase compare
GFF257 -2.3 -9.1 Phosphomethylpyrimidine synthase compare
GFF1109 -2.2 -7.0 dTDP-4-oxo-6-deoxy-D-allose reductase compare
GFF1847 -2.2 -7.6 Quinolinate synthase A compare
GFF1006 -2.1 -2.8 hypothetical protein compare
GFF4061 -1.9 -1.7 hypothetical protein compare
GFF841 -1.9 -2.7 RNA-binding protein Hfq compare
GFF1135 -1.9 -3.8 hypothetical protein compare
GFF1896 -1.8 -4.1 hypothetical protein compare
GFF1138 -1.8 -4.1 hypothetical protein compare
GFF2442 -1.7 -9.0 Fructose-bisphosphate aldolase compare
GFF3722 -1.6 -3.1 hypothetical protein compare
GFF1849 -1.6 -2.6 putative nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
GFF1271 -1.6 -2.4 hypothetical protein compare
GFF3070 -1.6 -4.0 hypothetical protein compare
GFF4526 -1.6 -3.1 Sporulation initiation phosphotransferase F compare
GFF1189 -1.5 -3.4 hypothetical protein compare
GFF1087 -1.5 -5.2 Glutamate racemase compare
GFF3560 -1.4 -2.9 NAD-specific glutamate dehydrogenase compare
GFF3699 -1.4 -6.0 hypothetical protein compare
GFF3526 -1.4 -2.6 NAD-dependent malic enzyme compare
GFF1413 -1.3 -3.1 D-amino acid dehydrogenase 1 compare
GFF1768 -1.3 -1.6 Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB compare
GFF701 -1.3 -2.8 Heme A synthase compare
GFF4399 -1.2 -7.9 hypothetical protein compare
GFF1715 -1.2 -2.8 hypothetical protein compare
GFF3569 -1.2 -1.7 hypothetical protein compare
GFF1019 -1.2 -1.9 Putative amino-acid ABC transporter-binding protein YhdW compare
GFF295 -1.2 -3.0 hypothetical protein compare
GFF3742 -1.2 -2.2 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
GFF4409 -1.1 -1.8 Succinate--CoA ligase [ADP-forming] subunit alpha compare
GFF2973 -1.1 -2.1 Anti-sigma-F factor NrsF compare
GFF3781 -1.1 -2.0 Transcriptional regulatory protein FixJ compare
GFF719 -1.1 -1.7 hypothetical protein compare
GFF3697 -1.1 -1.4 Methenyltetrahydromethanopterin cyclohydrolase compare
GFF204 -1.1 -2.6 hypothetical protein compare
GFF1415 -1.1 -1.5 hypothetical protein compare
GFF1797 -1.1 -4.4 Biosynthetic peptidoglycan transglycosylase compare
GFF1179 -1.1 -2.0 Dihydroanticapsin 7-dehydrogenase compare
GFF2336 -1.0 -1.6 Adaptive-response sensory-kinase SasA compare
GFF320 -1.0 -1.7 hypothetical protein compare
GFF4685 -1.0 -1.4 HTH-type transcriptional regulator HdfR compare
GFF1121 -1.0 -5.3 hypothetical protein compare
GFF4812 -1.0 -3.0 HTH-type transcriptional repressor AllR compare
GFF1015 -1.0 -1.7 hypothetical protein compare
GFF1120 -1.0 -6.8 hypothetical protein compare
GFF2370 -0.9 -1.1 hypothetical protein compare
GFF3861 -0.9 -2.5 Linearmycin resistance ATP-binding protein LnrL compare
GFF1761 -0.9 -3.5 hypothetical protein compare
GFF3032 -0.9 -1.9 hypothetical protein compare
GFF45 -0.9 -5.2 Spermidine/putrescine import ATP-binding protein PotA compare
GFF4496 -0.9 -2.2 Flagellar motor switch protein FliG compare
GFF3820 -0.9 -1.6 hypothetical protein compare
GFF4224 -0.9 -1.8 hypothetical protein compare
GFF1727 -0.9 -2.8 putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B compare
GFF66 -0.9 -2.4 Methionine aminopeptidase compare
GFF2222 -0.9 -2.0 Farnesyl diphosphate synthase compare
GFF705 -0.9 -2.7 hypothetical protein compare
GFF1435 -0.9 -1.1 Beta-ketoadipyl-CoA thiolase compare
GFF2310 -0.9 -1.8 hypothetical protein compare
GFF2366 -0.9 -1.9 hypothetical protein compare
GFF2516 -0.9 -1.0 Dihydroanticapsin 7-dehydrogenase compare
GFF3427 -0.9 -4.3 Glutamine-dependent NAD(+) synthetase compare
GFF4258 -0.8 -1.4 Pyridoxine/pyridoxamine 5'-phosphate oxidase compare
GFF1652 -0.8 -1.4 hypothetical protein compare
GFF682 -0.8 -2.8 hypothetical protein compare
GFF1260 -0.8 -1.8 hypothetical protein compare
GFF2974 -0.8 -1.0 hypothetical protein compare
GFF2467 -0.8 -1.5 hypothetical protein compare
GFF1177 -0.8 -3.8 HTH-type transcriptional regulator KipR compare
GFF537 -0.8 -3.7 Molybdenum cofactor guanylyltransferase compare
GFF4252 -0.8 -1.1 putative HTH-type transcriptional regulator YybR compare
GFF1654 -0.8 -4.2 Bifunctional chorismate mutase/prephenate dehydratase compare
GFF2316 -0.8 -4.4 Sensor histidine kinase RcsC compare
GFF2145 -0.8 -1.8 hypothetical protein compare
GFF1739 -0.8 -4.7 Putrescine-binding periplasmic protein SpuD compare
GFF2672 -0.8 -2.6 hypothetical protein compare
GFF2805 -0.8 -2.6 Ferredoxin--NADP reductase compare
GFF2463 -0.8 -5.1 Gamma-glutamylputrescine oxidoreductase compare
GFF4019 -0.8 -1.6 hypothetical protein compare
GFF748 -0.8 -2.0 hypothetical protein compare
GFF3174 -0.8 -1.9 hypothetical protein compare
GFF4343 -0.7 -1.2 hypothetical protein compare
GFF1021 -0.7 -2.0 hypothetical protein compare
GFF4703 -0.7 -1.0 Alcohol dehydrogenase compare
GFF113 -0.7 -1.1 hypothetical protein compare
GFF2546 -0.7 -1.6 hypothetical protein compare
GFF4651 -0.7 -3.3 Putrescine--pyruvate aminotransferase compare
GFF3602 -0.7 -2.3 hypothetical protein compare
GFF3640 -0.7 -5.8 hypothetical protein compare
GFF877 -0.7 -1.4 hypothetical protein compare
GFF2448 -0.7 -5.0 Ribulose bisphosphate carboxylase large chain compare
GFF4051 -0.7 -2.1 hypothetical protein compare
GFF1958 -0.7 -2.7 Pyruvate kinase compare
GFF1792 -0.7 -1.6 Putative aminoacrylate hydrolase RutD compare
GFF73 -0.7 -1.8 hypothetical protein compare
GFF761 -0.7 -1.7 Lipopolysaccharide export system ATP-binding protein LptB compare
GFF1127 -0.7 -4.1 UDP-N-acetylglucosamine 4-epimerase compare
GFF2149 -0.7 -3.2 hypothetical protein compare
GFF3449 -0.7 -2.0 HTH-type transcriptional regulator LutR compare
GFF15 -0.7 -1.2 hypothetical protein compare
GFF4413 -0.7 -1.1 Serine acetyltransferase compare
GFF2443 -0.7 -4.6 Transketolase 2 compare
GFF3076 -0.7 -1.6 hypothetical protein compare
GFF4569 -0.7 -1.3 Limonene 1,2-monooxygenase compare
GFF2045 -0.7 -1.1 tRNA pseudouridine synthase A compare
GFF665 -0.7 -2.0 hypothetical protein compare
GFF4547 -0.7 -1.8 2-hydroxy-3-oxopropionate reductase compare
GFF3921 -0.7 -1.0 Small heat shock protein IbpA compare
GFF3047 -0.7 -1.2 Bicarbonate transport ATP-binding protein CmpD compare
GFF286 -0.7 -1.8 HTH-type transcriptional regulator HdfR compare
GFF4731 -0.7 -1.6 hypothetical protein compare
GFF1146 -0.7 -1.9 hypothetical protein compare
GFF3579 -0.7 -1.7 hypothetical protein compare
GFF1841 -0.7 -1.0 hypothetical protein compare
GFF3440 -0.7 -2.2 Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH compare
GFF3348 -0.7 -2.0 HTH-type transcriptional regulator GltC compare
GFF4384 -0.7 -2.2 hypothetical protein compare
GFF2750 -0.7 -1.2 putative siderophore transport system permease protein YfiZ compare
GFF2831 -0.6 -2.6 putative oxidoreductase compare
GFF3456 -0.6 -1.0 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
GFF4310 -0.6 -2.2 hypothetical protein compare
GFF3918 -0.6 -1.1 hypothetical protein compare
GFF1657 -0.6 -3.0 hypothetical protein compare
GFF1907 -0.6 -2.8 hypothetical protein compare
GFF540 -0.6 -2.2 hypothetical protein compare
GFF4566 -0.6 -1.4 Acyl carrier protein compare
GFF1412 -0.6 -3.4 hypothetical protein compare
GFF4583 -0.6 -4.6 hypothetical protein compare
GFF2360 -0.6 -1.4 hypothetical protein compare
GFF2112 -0.6 -1.9 hypothetical protein compare
GFF1425 -0.6 -2.7 hypothetical protein compare
GFF166 -0.6 -1.5 Histidinol-phosphatase compare
GFF106 -0.6 -1.4 Copper-sensing transcriptional repressor CsoR compare
GFF4418 -0.6 -1.2 hypothetical protein compare
GFF4559 -0.6 -1.8 hypothetical protein compare
GFF4553 -0.6 -1.0 Glutathione S-transferase GST-6.0 compare
GFF47 -0.6 -1.9 Inner membrane ABC transporter permease protein YdcV compare
GFF3484 -0.6 -1.6 hypothetical protein compare
GFF1233 -0.6 -2.1 hypothetical protein compare
GFF1485 -0.6 -2.6 Lactose transport system permease protein LacG compare
GFF1935 -0.6 -2.7 hypothetical protein compare
GFF1909 -0.6 -4.4 hypothetical protein compare
GFF159 -0.6 -1.4 hypothetical protein compare
GFF551 -0.6 -1.2 Beta-hexosaminidase compare
GFF4436 -0.6 -1.7 hypothetical protein compare
GFF2076 -0.6 -1.4 hypothetical protein compare
GFF3553 -0.6 -3.5 hypothetical protein compare
GFF3492 -0.6 -0.8 hypothetical protein compare
GFF4155 -0.6 -1.1 hypothetical protein compare
GFF1908 -0.6 -2.1 hypothetical protein compare
GFF708 -0.6 -0.9 hypothetical protein compare
GFF4219 -0.6 -1.0 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
GFF2447 -0.6 -2.7 Ribulose bisphosphate carboxylase small chain compare
GFF4485 -0.6 -1.4 hypothetical protein compare
GFF2543 -0.6 -2.4 hypothetical protein compare
GFF2853 -0.6 -1.5 Glycerate dehydrogenase compare
GFF3531 -0.6 -1.1 Ribonuclease D compare
GFF4156 -0.6 -1.4 Glyoxylate/hydroxypyruvate reductase B compare
GFF2446 -0.6 -3.4 Protein CbbX compare
GFF3013 -0.6 -1.6 Sulfate/thiosulfate import ATP-binding protein CysA compare
GFF1110 -0.6 -2.9 hypothetical protein compare
GFF1011 -0.6 -1.2 ATP-dependent Clp protease adapter protein ClpS compare
GFF331 -0.6 -1.2 hypothetical protein compare
GFF387 -0.6 -2.1 hypothetical protein compare
GFF4335 -0.6 -3.1 L-arabonate dehydratase compare
GFF3557 -0.6 -1.0 Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA compare
GFF2243 -0.6 -0.5 Ribosomal RNA small subunit methyltransferase I compare
GFF165 -0.6 -2.1 hypothetical protein compare
GFF2470 -0.6 -1.6 hypothetical protein compare
GFF2987 -0.6 -1.3 hypothetical protein compare
GFF1899 -0.6 -1.3 Putative anti-sigma factor antagonist BtrV compare
GFF3761 -0.6 -1.3 Transcriptional regulator MraZ compare
GFF3872 -0.6 -0.9 Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase compare
GFF2400 -0.6 -1.9 2-isopropylmalate synthase compare
GFF2862 -0.5 -1.8 Muconate cycloisomerase 1 compare
GFF3462 -0.5 -0.8 ATP-dependent RNA helicase RhlE compare
GFF720 -0.5 -1.0 1-deoxy-D-xylulose-5-phosphate synthase compare
GFF4814 -0.5 -1.6 hypothetical protein compare
GFF4095 -0.5 -2.0 Bicarbonate transport ATP-binding protein CmpD compare
GFF2091 -0.5 -1.1 hypothetical protein compare
GFF2628 -0.5 -2.9 Gluconate 5-dehydrogenase compare
GFF4891 -0.5 -0.7 Ferredoxin-like protein FixX compare
GFF3124 -0.5 -0.8 hypothetical protein compare
GFF4640 -0.5 -1.9 hypothetical protein compare
GFF2936 -0.5 -1.1 D-methionine transport system permease protein MetI compare
GFF140 -0.5 -1.4 hypothetical protein compare
GFF4117 -0.5 -0.9 hypothetical protein compare
GFF550 -0.5 -1.4 hypothetical protein compare
GFF3319 -0.5 -3.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Xanthobacter sp. DMC5 in carbon source experiments

For carbon source Methanol across organisms