Experiment set1S569 for Rhodanobacter sp000427505 FW510-R12

Compare to:

biofilm; Day1; NLDM; Aluminum chloride hydrate 1mM

200 most important genes:

  gene name fitness t score description  
LRK53_RS15875 -3.8 -1.7 hypothetical protein compare
LRK53_RS18850 -3.1 -2.8 type IV conjugative transfer system protein TraL compare
LRK53_RS13060 -2.9 -2.4 DksA/TraR family C4-type zinc finger protein compare
LRK53_RS19140 -2.8 -2.4 hypothetical protein compare
LRK53_RS17885 -2.6 -1.8 orotate phosphoribosyltransferase compare
LRK53_RS05340 -2.6 -2.3 peptide deformylase compare
LRK53_RS06670 -2.4 -1.7 RIP metalloprotease RseP compare
LRK53_RS04445 -2.4 -1.6 glycoside hydrolase family 99-like domain-containing protein compare
LRK53_RS01570 -2.3 -2.7 DNA polymerase I compare
LRK53_RS04390 -2.3 -1.6 glycosyltransferase family 2 protein compare
LRK53_RS00135 -2.2 -8.2 patatin-like phospholipase family protein compare
LRK53_RS12440 -2.2 -2.1 hypothetical protein compare
LRK53_RS01530 -2.1 -0.8 YiiD C-terminal domain-containing protein compare
LRK53_RS06500 -2.0 -1.3 disulfide bond formation protein B compare
LRK53_RS15185 -2.0 -1.0 methyl-accepting chemotaxis protein compare
LRK53_RS12005 -1.9 -1.3 RNA polymerase sigma factor RpoE compare
LRK53_RS07450 -1.9 -1.2 50S ribosomal protein L19 compare
LRK53_RS14840 -1.9 -1.8 trypsin-like peptidase domain-containing protein compare
LRK53_RS18025 -1.9 -1.0 hypothetical protein compare
LRK53_RS10200 -1.9 -2.0 TraR/DksA C4-type zinc finger protein compare
LRK53_RS14770 -1.8 -2.5 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS00565 -1.7 -2.6 ATP-binding protein compare
LRK53_RS00940 -1.7 -0.9 hypothetical protein compare
LRK53_RS10050 -1.7 -2.7 DNA-binding domain-containing protein compare
LRK53_RS11795 -1.7 -2.3 cytochrome-c oxidase, cbb3-type subunit III compare
LRK53_RS19175 -1.7 -1.6 hypothetical protein compare
LRK53_RS12980 -1.7 -1.2 hypothetical protein compare
LRK53_RS18155 -1.7 -1.8 hypothetical protein compare
LRK53_RS08470 -1.6 -2.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LRK53_RS05435 -1.6 -1.2 GNAT family N-acetyltransferase compare
LRK53_RS13940 -1.6 -2.2 peptide-methionine (R)-S-oxide reductase MsrB compare
LRK53_RS09730 -1.6 -4.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK53_RS15955 -1.6 -2.1 PhzF family phenazine biosynthesis protein compare
LRK53_RS02885 -1.5 -3.5 glycosyltransferase family 2 protein compare
LRK53_RS09590 -1.5 -1.6 hypothetical protein compare
LRK53_RS02255 -1.5 -1.9 3-oxoacyl-ACP reductase FabG compare
LRK53_RS11660 -1.5 -4.1 transcriptional regulator compare
LRK53_RS05545 -1.5 -3.5 ATP-binding protein compare
LRK53_RS04605 -1.5 -1.9 DUF4442 domain-containing protein compare
LRK53_RS07245 -1.5 -1.1 ribosome silencing factor compare
LRK53_RS18830 -1.5 -1.6 TraV family lipoprotein compare
LRK53_RS16160 -1.5 -3.1 hypothetical protein compare
LRK53_RS16345 -1.4 -1.4 hypothetical protein compare
LRK53_RS09330 -1.4 -3.5 PilZ domain-containing protein compare
LRK53_RS02335 -1.4 -1.4 hypothetical protein compare
LRK53_RS01745 -1.4 -7.1 TetR/AcrR family transcriptional regulator compare
LRK53_RS16995 -1.3 -0.9 aminodeoxychorismate/anthranilate synthase component II compare
LRK53_RS05175 -1.3 -1.5 7-cyano-7-deazaguanine synthase QueC compare
LRK53_RS03700 -1.3 -0.6 transcription termination factor Rho compare
LRK53_RS03235 -1.2 -1.5 glycerophosphodiester phosphodiesterase compare
LRK53_RS07280 -1.2 -1.5 YkgJ family cysteine cluster protein compare
LRK53_RS08855 -1.2 -2.1 Maf family nucleotide pyrophosphatase compare
LRK53_RS16105 -1.2 -2.0 hypothetical protein compare
LRK53_RS05740 -1.2 -0.8 chemotaxis protein CheW compare
LRK53_RS03165 -1.2 -1.3 homoserine dehydrogenase compare
LRK53_RS11300 -1.1 -2.9 polysaccharide biosynthesis protein compare
LRK53_RS06640 -1.1 -2.7 ribonuclease HII compare
LRK53_RS04070 -1.1 -0.7 NADP-dependent malic enzyme compare
LRK53_RS17400 -1.1 -3.9 tRNA dihydrouridine(20/20a) synthase DusA compare
LRK53_RS05265 -1.1 -1.4 hypothetical protein compare
LRK53_RS03760 -1.1 -1.6 NRDE family protein compare
LRK53_RS14865 -1.1 -1.5 CBS domain-containing protein compare
LRK53_RS04200 -1.1 -1.1 hypothetical protein compare
LRK53_RS05255 -1.0 -2.7 LysR substrate-binding domain-containing protein compare
LRK53_RS11280 -1.0 -1.9 MBL fold metallo-hydrolase compare
LRK53_RS04325 -1.0 -2.4 type II toxin-antitoxin system ParD family antitoxin compare
LRK53_RS02535 -1.0 -5.3 DUF481 domain-containing protein compare
LRK53_RS16320 -1.0 -2.3 uracil-DNA glycosylase family protein compare
LRK53_RS00240 -1.0 -2.7 DUF3820 family protein compare
LRK53_RS12280 -1.0 -1.1 tRNA pseudouridine(13) synthase TruD compare
LRK53_RS19155 -1.0 -1.2 hypothetical protein compare
LRK53_RS08005 -1.0 -5.7 transcription-repair coupling factor compare
LRK53_RS16495 -1.0 -2.9 adenosylhomocysteinase compare
LRK53_RS18670 -1.0 -2.0 translesion DNA synthesis-associated protein ImuA compare
LRK53_RS12700 -1.0 -1.8 DUF3293 domain-containing protein compare
LRK53_RS13415 -1.0 -1.1 DUF2059 domain-containing protein compare
LRK53_RS13920 -1.0 -2.6 YajQ family cyclic di-GMP-binding protein compare
LRK53_RS00720 -0.9 -1.5 acyloxyacyl hydrolase compare
LRK53_RS11370 -0.9 -2.7 2OG-Fe(II) oxygenase compare
LRK53_RS11915 -0.9 -2.3 cold-shock protein compare
LRK53_RS14900 -0.9 -1.9 methyl-accepting chemotaxis protein compare
LRK53_RS03535 -0.9 -2.4 DMT family transporter compare
LRK53_RS18085 -0.9 -3.7 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK53_RS06835 -0.9 -2.6 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
LRK53_RS08910 -0.9 -1.6 endolytic transglycosylase MltG compare
LRK53_RS08215 -0.9 -2.6 MFS transporter compare
LRK53_RS11780 -0.9 -3.0 cytochrome-c oxidase, cbb3-type subunit I compare
LRK53_RS05470 -0.9 -3.0 hypothetical protein compare
LRK53_RS14910 -0.9 -1.9 chemoreceptor glutamine deamidase CheD compare
LRK53_RS00475 -0.9 -2.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
LRK53_RS13780 -0.9 -1.7 acetoacetyl-CoA reductase compare
LRK53_RS16640 -0.9 -1.3 hypothetical protein compare
LRK53_RS10425 -0.9 -1.4 DNA-binding protein compare
LRK53_RS04050 -0.8 -2.5 SGNH/GDSL hydrolase family protein compare
LRK53_RS01595 -0.8 -2.3 DUF3426 domain-containing protein compare
LRK53_RS11140 -0.8 -1.2 hypothetical protein compare
LRK53_RS11265 -0.8 -1.0 hypothetical protein compare
LRK53_RS14010 -0.8 -1.2 N-acetylmuramoyl-L-alanine amidase compare
LRK53_RS16505 -0.8 -3.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
LRK53_RS17865 -0.8 -0.9 anhydro-N-acetylmuramic acid kinase compare
LRK53_RS16790 -0.8 -0.8 YicC family protein compare
LRK53_RS03895 -0.8 -1.6 helix-turn-helix domain-containing protein compare
LRK53_RS05075 -0.8 -2.0 DUF3363 domain-containing protein compare
LRK53_RS19060 -0.8 -1.8 hypothetical protein compare
LRK53_RS00570 -0.8 -3.0 nitrogen regulation protein NR(I) compare
LRK53_RS12110 -0.8 -6.3 transglycosylase SLT domain-containing protein compare
LRK53_RS15060 -0.8 -0.6 flagellar export protein FliJ compare
LRK53_RS17625 -0.8 -0.8 benenodin family lasso peptide compare
LRK53_RS00145 -0.8 -2.3 DJ-1/PfpI family protein compare
LRK53_RS10270 -0.8 -0.7 alpha/beta fold hydrolase compare
LRK53_RS14100 -0.8 -1.1 response regulator transcription factor compare
LRK53_RS11310 -0.8 -3.6 lipopolysaccharide assembly protein LapB compare
LRK53_RS14105 -0.8 -3.2 sensor histidine kinase compare
LRK53_RS02890 -0.8 -2.9 glycosyltransferase compare
LRK53_RS12285 -0.8 -1.3 magnesium transporter compare
LRK53_RS18960 -0.8 -0.7 hypothetical protein compare
LRK53_RS15845 -0.8 -3.8 penicillin-binding protein 1B compare
LRK53_RS19070 -0.8 -2.4 hypothetical protein compare
LRK53_RS07385 -0.8 -2.8 MalM family protein compare
LRK53_RS15605 -0.8 -1.1 MGMT family protein compare
LRK53_RS19015 -0.8 -1.7 hypothetical protein compare
LRK53_RS00645 -0.8 -1.3 GTP cyclohydrolase I FolE compare
LRK53_RS02290 -0.8 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
LRK53_RS06165 -0.7 -3.8 YihY family inner membrane protein compare
LRK53_RS18125 -0.7 -0.5 hypothetical protein compare
LRK53_RS16200 -0.7 -2.3 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK53_RS15645 -0.7 -1.6 AI-2E family transporter compare
LRK53_RS02845 -0.7 -1.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK53_RS07405 -0.7 -1.5 30S ribosomal protein S18 compare
LRK53_RS06545 -0.7 -2.4 TIGR02099 family protein compare
LRK53_RS18460 -0.7 -0.7 hypothetical protein compare
LRK53_RS13030 -0.7 -2.2 hypothetical protein compare
LRK53_RS10035 -0.7 -0.4 hypothetical protein compare
LRK53_RS07020 -0.7 -1.2 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK53_RS06585 -0.7 -2.2 transposase compare
LRK53_RS03225 -0.7 -1.2 hypothetical protein compare
LRK53_RS06560 -0.7 -1.8 hypothetical protein compare
LRK53_RS04485 -0.7 -4.8 sulfate adenylyltransferase subunit CysD compare
LRK53_RS03330 -0.7 -0.7 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK53_RS08095 -0.7 -1.0 copper-binding protein compare
LRK53_RS15705 -0.7 -3.2 RNA polymerase factor sigma-54 compare
LRK53_RS02500 -0.7 -2.3 hypothetical protein compare
LRK53_RS00095 -0.7 -2.2 AMP-binding protein compare
LRK53_RS03725 -0.7 -3.7 response regulator compare
LRK53_RS03865 -0.7 -2.4 DsbA family oxidoreductase compare
LRK53_RS11255 -0.7 -1.4 DNA oxidative demethylase AlkB compare
LRK53_RS15005 -0.7 -2.4 flagellar biosynthesis protein FlhF compare
LRK53_RS14640 -0.7 -0.6 MoaD/ThiS family protein compare
LRK53_RS00830 -0.7 -2.0 heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein compare
LRK53_RS06925 -0.7 -1.0 MtnX-like HAD-IB family phosphatase compare
LRK53_RS04020 -0.7 -4.5 tetratricopeptide repeat-containing sulfotransferase family protein compare
LRK53_RS01640 -0.7 -1.8 divalent-cation tolerance protein CutA compare
LRK53_RS14050 -0.7 -1.7 CPBP family glutamic-type intramembrane protease compare
LRK53_RS08385 -0.7 -2.4 efflux transporter outer membrane subunit compare
LRK53_RS14685 -0.7 -1.7 deoxyribose-phosphate aldolase compare
LRK53_RS15965 -0.7 -2.1 (2Fe-2S)-binding protein compare
LRK53_RS16635 -0.6 -0.6 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS05785 -0.6 -2.0 inositol-phosphate phosphatase compare
LRK53_RS16865 -0.6 -2.8 aminopeptidase P N-terminal domain-containing protein compare
LRK53_RS09170 -0.6 -0.9 cupin domain-containing protein compare
LRK53_RS10080 -0.6 -2.9 TIGR04283 family arsenosugar biosynthesis glycosyltransferase compare
LRK53_RS07030 -0.6 -2.6 ABC transporter permease compare
LRK53_RS09100 -0.6 -1.5 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
LRK53_RS16170 -0.6 -2.0 histone deacetylase family protein compare
LRK53_RS19165 -0.6 -0.7 hypothetical protein compare
LRK53_RS00560 -0.6 -3.2 ABC transporter ATP-binding protein/permease compare
LRK53_RS06035 -0.6 -0.5 helix-turn-helix domain-containing protein compare
LRK53_RS14645 -0.6 -0.6 molybdopterin molybdotransferase MoeA compare
LRK53_RS14360 -0.6 -2.7 hypothetical protein compare
LRK53_RS01270 -0.6 -1.4 DUF2244 domain-containing protein compare
LRK53_RS12135 -0.6 -4.9 endopeptidase La compare
LRK53_RS17540 -0.6 -0.8 YbaN family protein compare
LRK53_RS07035 -0.6 -1.5 TolC family protein compare
LRK53_RS14130 -0.6 -0.7 hypothetical protein compare
LRK53_RS15630 -0.6 -1.8 RNA methyltransferase compare
LRK53_RS14470 -0.6 -2.3 PepSY domain-containing protein compare
LRK53_RS05685 -0.6 -4.2 type IV pilus twitching motility protein PilT compare
LRK53_RS11805 -0.6 -1.1 heavy metal translocating P-type ATPase compare
LRK53_RS17040 -0.6 -2.0 diaminopimelate decarboxylase compare
LRK53_RS12675 -0.6 -2.5 DHA2 family efflux MFS transporter permease subunit compare
LRK53_RS08730 -0.6 -1.2 hypothetical protein compare
LRK53_RS06865 -0.6 -2.9 phosphotransferase compare
LRK53_RS08375 -0.6 -1.6 DUF4399 domain-containing protein compare
LRK53_RS07735 -0.6 -1.9 PIN domain-containing protein compare
LRK53_RS08190 -0.6 -4.0 sensor domain-containing protein compare
LRK53_RS04490 -0.6 -5.3 adenylyl-sulfate kinase compare
LRK53_RS03345 -0.6 -5.1 DPP IV N-terminal domain-containing protein compare
LRK53_RS10120 -0.6 -1.7 YncE family protein compare
LRK53_RS04370 -0.6 -3.3 cystathionine gamma-synthase compare
LRK53_RS11025 -0.6 -1.4 hypothetical protein compare
LRK53_RS13070 -0.6 -1.1 OsmC family protein compare
LRK53_RS00780 -0.6 -2.3 MBL fold metallo-hydrolase compare
LRK53_RS05540 -0.6 -3.6 sigma-54 dependent transcriptional regulator compare
LRK53_RS09555 -0.6 -2.4 winged helix-turn-helix transcriptional regulator compare
LRK53_RS03370 -0.6 -0.8 YifB family Mg chelatase-like AAA ATPase compare
LRK53_RS01140 -0.6 -2.0 complex I NDUFA9 subunit family protein compare
LRK53_RS13305 -0.6 -1.7 DUF3606 domain-containing protein compare
LRK53_RS01800 -0.6 -3.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LRK53_RS11285 -0.6 -0.4 tRNA-binding protein compare
LRK53_RS18045 -0.6 -0.9 DUF6429 family protein compare


Specific Phenotypes

For 1 genes in this experiment

For biofilm assay; biofilm sample Aluminum chloride hydrate in Rhodanobacter sp000427505 FW510-R12

For biofilm assay; biofilm sample Aluminum chloride hydrate across organisms