Experiment set1S559 for Rhodanobacter sp000427505 FW510-R12

Compare to:

planktonic; Day2; NLDM; Aluminum chloride hydrate 1mM

200 most important genes:

  gene name fitness t score description  
LRK53_RS09435 -3.2 -2.2 malate dehydrogenase compare
LRK53_RS05045 -3.1 -1.6 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
LRK53_RS17865 -2.9 -2.0 anhydro-N-acetylmuramic acid kinase compare
LRK53_RS09730 -2.9 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK53_RS11300 -2.9 -4.4 polysaccharide biosynthesis protein compare
LRK53_RS04445 -2.9 -2.0 glycoside hydrolase family 99-like domain-containing protein compare
LRK53_RS14790 -2.8 -1.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
LRK53_RS06670 -2.8 -1.9 RIP metalloprotease RseP compare
LRK53_RS18675 -2.6 -2.1 DNA polymerase Y family protein compare
LRK53_RS14840 -2.5 -2.5 trypsin-like peptidase domain-containing protein compare
LRK53_RS19155 -2.5 -2.6 hypothetical protein compare
LRK53_RS18830 -2.3 -2.3 TraV family lipoprotein compare
LRK53_RS04390 -2.3 -3.7 glycosyltransferase family 2 protein compare
LRK53_RS09660 -2.2 -1.6 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
LRK53_RS15755 -2.2 -2.4 SDR family oxidoreductase compare
LRK53_RS06570 -2.2 -1.3 DUF615 domain-containing protein compare
LRK53_RS19135 -2.1 -3.2 hypothetical protein compare
LRK53_RS07500 -2.0 -2.3 membrane protein insertion efficiency factor YidD compare
LRK53_RS16495 -2.0 -4.2 adenosylhomocysteinase compare
LRK53_RS16300 -1.9 -2.6 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK53_RS16160 -1.8 -4.0 hypothetical protein compare
LRK53_RS01745 -1.8 -8.9 TetR/AcrR family transcriptional regulator compare
LRK53_RS16600 -1.8 -1.3 fumarylacetoacetate hydrolase family protein compare
LRK53_RS07980 -1.7 -1.9 GNAT family N-acetyltransferase compare
LRK53_RS00565 -1.7 -2.2 ATP-binding protein compare
LRK53_RS14100 -1.7 -3.4 response regulator transcription factor compare
LRK53_RS11185 -1.7 -0.9 DUF4115 domain-containing protein compare
LRK53_RS02335 -1.7 -1.5 hypothetical protein compare
LRK53_RS00945 -1.7 -2.3 helix-turn-helix domain-containing protein compare
LRK53_RS12665 -1.6 -7.7 efflux transporter outer membrane subunit compare
LRK53_RS05760 -1.6 -0.8 chemotaxis protein CheW compare
LRK53_RS11795 -1.6 -2.2 cytochrome-c oxidase, cbb3-type subunit III compare
LRK53_RS12370 -1.6 -2.0 VOC family protein compare
LRK53_RS11805 -1.6 -2.4 heavy metal translocating P-type ATPase compare
LRK53_RS02855 -1.6 -2.2 tetratricopeptide repeat protein compare
LRK53_RS02380 -1.6 -2.4 hypothetical protein compare
LRK53_RS12670 -1.6 -4.8 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS14770 -1.6 -3.0 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS12675 -1.6 -6.2 DHA2 family efflux MFS transporter permease subunit compare
LRK53_RS13770 -1.5 -3.4 protease HtpX compare
LRK53_RS13635 -1.5 -2.8 recombination regulator RecX compare
LRK53_RS11140 -1.5 -1.8 hypothetical protein compare
LRK53_RS02885 -1.4 -3.2 glycosyltransferase family 2 protein compare
LRK53_RS05470 -1.4 -3.5 hypothetical protein compare
LRK53_RS05465 -1.4 -2.1 hemin uptake protein HemP compare
LRK53_RS05265 -1.4 -1.4 hypothetical protein compare
LRK53_RS12880 -1.4 -1.6 hypothetical protein compare
LRK53_RS11155 -1.3 -6.3 glutamine-hydrolyzing GMP synthase compare
LRK53_RS03720 -1.3 -5.4 permease-like cell division protein FtsX compare
LRK53_RS12150 -1.3 -4.5 trigger factor compare
LRK53_RS13895 -1.3 -0.9 histone H1-like repetitive region-containing protein compare
LRK53_RS00395 -1.3 -2.4 SDR family oxidoreductase compare
LRK53_RS05580 -1.3 -3.0 phosphatidylcholine/phosphatidylserine synthase compare
LRK53_RS02890 -1.2 -5.2 glycosyltransferase compare
LRK53_RS19140 -1.2 -1.6 hypothetical protein compare
LRK53_RS15870 -1.2 -4.0 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
LRK53_RS15655 -1.2 -3.8 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK53_RS04200 -1.2 -1.6 hypothetical protein compare
LRK53_RS04750 -1.2 -3.3 L-serine ammonia-lyase compare
LRK53_RS16790 -1.2 -1.3 YicC family protein compare
LRK53_RS13625 -1.2 -2.2 carbon storage regulator CsrA compare
LRK53_RS00720 -1.2 -1.7 acyloxyacyl hydrolase compare
LRK53_RS07045 -1.2 -1.4 response regulator compare
LRK53_RS07915 -1.2 -5.4 methionine synthase compare
LRK53_RS11620 -1.2 -1.5 hypothetical protein compare
LRK53_RS17885 -1.2 -1.3 orotate phosphoribosyltransferase compare
LRK53_RS09315 -1.2 -2.5 pseudouridine synthase compare
LRK53_RS04265 -1.1 -3.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK53_RS14010 -1.1 -2.4 N-acetylmuramoyl-L-alanine amidase compare
LRK53_RS17860 -1.1 -2.2 peptidoglycan DD-metalloendopeptidase family protein compare
LRK53_RS07920 -1.1 -3.3 homocysteine S-methyltransferase family protein compare
LRK53_RS11490 -1.1 -2.0 preprotein translocase subunit SecG compare
LRK53_RS05905 -1.1 -1.3 thymidylate synthase compare
LRK53_RS05360 -1.1 -2.7 peptide deformylase compare
LRK53_RS11330 -1.1 -2.3 (d)CMP kinase compare
LRK53_RS03625 -1.1 -2.3 ABC transporter ATP-binding protein compare
LRK53_RS01325 -1.1 -3.2 magnesium-translocating P-type ATPase compare
LRK53_RS06035 -1.1 -0.9 helix-turn-helix domain-containing protein compare
LRK53_RS02895 -1.1 -7.0 O-antigen ligase family protein compare
LRK53_RS04505 -1.1 -1.6 met regulon transcriptional regulator MetJ compare
LRK53_RS18080 -1.1 -3.3 glucose-6-phosphate isomerase compare
LRK53_RS02850 -1.1 -1.1 response regulator compare
LRK53_RS11780 -1.1 -3.2 cytochrome-c oxidase, cbb3-type subunit I compare
LRK53_RS12980 -1.1 -1.6 hypothetical protein compare
LRK53_RS17785 -1.1 -2.8 septal ring lytic transglycosylase RlpA family protein compare
LRK53_RS14800 -1.1 -4.8 DUF1631 domain-containing protein compare
LRK53_RS03410 -1.1 -1.7 SCP2 sterol-binding domain-containing protein compare
LRK53_RS00260 -1.0 -2.6 YbhB/YbcL family Raf kinase inhibitor-like protein compare
LRK53_RS02645 -1.0 -3.0 LysM peptidoglycan-binding domain-containing protein compare
LRK53_RS01200 -1.0 -3.1 hypothetical protein compare
LRK53_RS13255 -1.0 -3.2 hypothetical protein compare
LRK53_RS07245 -1.0 -1.0 ribosome silencing factor compare
LRK53_RS01585 -1.0 -1.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS13070 -1.0 -1.8 OsmC family protein compare
LRK53_RS05165 -1.0 -4.2 tol-pal system protein YbgF compare
LRK53_RS00545 -1.0 -3.3 B12-binding domain-containing radical SAM protein compare
LRK53_RS13415 -1.0 -1.4 DUF2059 domain-containing protein compare
LRK53_RS04300 -1.0 -2.5 DUF4398 domain-containing protein compare
LRK53_RS07035 -1.0 -2.5 TolC family protein compare
LRK53_RS06545 -1.0 -2.8 TIGR02099 family protein compare
LRK53_RS09470 -1.0 -2.1 TerC family protein compare
LRK53_RS13805 -1.0 -2.4 pirin family protein compare
LRK53_RS16345 -1.0 -1.0 hypothetical protein compare
LRK53_RS05390 -1.0 -5.6 serine hydroxymethyltransferase compare
LRK53_RS06845 -1.0 -2.1 preprotein translocase subunit YajC compare
LRK53_RS18855 -0.9 -2.2 hypothetical protein compare
LRK53_RS18025 -0.9 -1.0 hypothetical protein compare
LRK53_RS10200 -0.9 -1.1 TraR/DksA C4-type zinc finger protein compare
LRK53_RS04540 -0.9 -2.0 CBS domain-containing protein compare
LRK53_RS14925 -0.9 -2.8 chemotaxis protein CheW compare
LRK53_RS08575 -0.9 -2.0 RNA-binding S4 domain-containing protein compare
LRK53_RS19000 -0.9 -3.6 hypothetical protein compare
LRK53_RS00440 -0.9 -1.9 hypothetical protein compare
LRK53_RS14785 -0.9 -2.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
LRK53_RS06025 -0.9 -2.4 nucleotidyltransferase domain-containing protein compare
LRK53_RS08455 -0.9 -1.4 ATP phosphoribosyltransferase compare
LRK53_RS18850 -0.9 -1.0 type IV conjugative transfer system protein TraL compare
LRK53_RS03360 -0.9 -1.4 P-II family nitrogen regulator compare
LRK53_RS18045 -0.9 -1.5 DUF6429 family protein compare
LRK53_RS09170 -0.9 -1.5 cupin domain-containing protein compare
LRK53_RS09710 -0.9 -1.7 high frequency lysogenization protein HflD compare
LRK53_RS12485 -0.9 -1.3 hypothetical protein compare
LRK53_RS06930 -0.9 -1.4 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS14725 -0.8 -1.4 DUF2249 domain-containing protein compare
LRK53_RS14215 -0.8 -1.6 hypothetical protein compare
LRK53_RS09085 -0.8 -1.2 30S ribosomal protein S15 compare
LRK53_RS08420 -0.8 -3.0 MerC domain-containing protein compare
LRK53_RS19120 -0.8 -2.6 hypothetical protein compare
LRK53_RS04285 -0.8 -3.9 phosphoglycerate kinase compare
LRK53_RS15150 -0.8 -1.8 flagellar basal-body rod protein FlgG compare
LRK53_RS01660 -0.8 -1.3 hypothetical protein compare
LRK53_RS00685 -0.8 -4.8 SIS domain-containing protein compare
LRK53_RS15315 -0.8 -2.7 hypothetical protein compare
LRK53_RS15105 -0.8 -1.9 flagellar export chaperone FliS compare
LRK53_RS09100 -0.8 -1.8 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
LRK53_RS13015 -0.8 -2.6 alkylphosphonate utilization protein compare
LRK53_RS06835 -0.8 -2.0 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
LRK53_RS07105 -0.8 -1.6 RNA polymerase-associated protein RapA compare
LRK53_RS00695 -0.8 -4.5 TonB-dependent vitamin B12 receptor compare
LRK53_RS16165 -0.8 -1.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
LRK53_RS08350 -0.8 -1.7 tryptophan synthase subunit beta compare
LRK53_RS19105 -0.8 -2.1 hypothetical protein compare
LRK53_RS05765 -0.8 -0.8 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
LRK53_RS05645 -0.8 -2.9 kinase compare
LRK53_RS03095 -0.8 -1.6 dihydroxy-acid dehydratase compare
LRK53_RS09865 -0.8 -2.3 thioesterase compare
LRK53_RS05785 -0.8 -2.2 inositol-phosphate phosphatase compare
LRK53_RS01475 -0.8 -1.8 hypothetical protein compare
LRK53_RS16765 -0.8 -6.4 ABC transporter substrate-binding protein compare
LRK53_RS02290 -0.8 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
LRK53_RS13060 -0.8 -0.9 DksA/TraR family C4-type zinc finger protein compare
LRK53_RS01090 -0.8 -1.6 D-aminoacyl-tRNA deacylase compare
LRK53_RS07670 -0.8 -2.9 NUDIX domain-containing protein compare
LRK53_RS03800 -0.8 -1.6 FAD-dependent oxidoreductase compare
LRK53_RS08450 -0.8 -1.5 YerC/YecD family TrpR-related protein compare
LRK53_RS18340 -0.8 -2.4 hypothetical protein compare
LRK53_RS14090 -0.8 -1.2 ABC transporter ATP-binding protein compare
LRK53_RS07300 -0.8 -2.3 DEAD/DEAH box helicase compare
LRK53_RS19005 -0.7 -1.9 phosphoadenosine phosphosulfate reductase family protein compare
LRK53_RS01520 -0.7 -1.7 rhodanese-like domain-containing protein compare
LRK53_RS11915 -0.7 -1.7 cold-shock protein compare
LRK53_RS09620 -0.7 -2.0 hypothetical protein compare
LRK53_RS06720 -0.7 -3.7 CopD family protein compare
LRK53_RS16625 -0.7 -2.3 efflux RND transporter permease subunit compare
LRK53_RS10265 -0.7 -3.1 2-hydroxymuconic semialdehyde dehydrogenase compare
LRK53_RS01160 -0.7 -2.8 endonuclease/exonuclease/phosphatase family protein compare
LRK53_RS13525 -0.7 -2.1 ferredoxin family protein compare
LRK53_RS15965 -0.7 -2.5 (2Fe-2S)-binding protein compare
LRK53_RS07395 -0.7 -2.2 iron-sulfur cluster assembly accessory protein compare
LRK53_RS01435 -0.7 -2.3 alpha/beta hydrolase compare
LRK53_RS09535 -0.7 -3.8 FtsH protease activity modulator HflK compare
LRK53_RS07625 -0.7 -2.0 hypothetical protein compare
LRK53_RS14910 -0.7 -1.3 chemoreceptor glutamine deamidase CheD compare
LRK53_RS11565 -0.7 -1.2 nucleoside diphosphate kinase regulator compare
LRK53_RS03065 -0.7 -0.5 4-hydroxybenzoate octaprenyltransferase compare
LRK53_RS02535 -0.7 -3.4 DUF481 domain-containing protein compare
LRK53_RS14085 -0.7 -2.9 ABC transporter permease subunit compare
LRK53_RS12420 -0.7 -2.7 SgcJ/EcaC family oxidoreductase compare
LRK53_RS10295 -0.7 -1.8 YCF48-related protein compare
LRK53_RS17465 -0.7 -2.3 hypothetical protein compare
LRK53_RS14950 -0.7 -0.8 flagellar hook-length control protein FliK compare
LRK53_RS11610 -0.7 -1.7 low molecular weight phosphotyrosine protein phosphatase compare
LRK53_RS09935 -0.7 -1.3 mercury resistance system periplasmic binding protein MerP compare
LRK53_RS00240 -0.7 -2.2 DUF3820 family protein compare
LRK53_RS02095 -0.7 -1.6 helix-turn-helix domain-containing protein compare
LRK53_RS04590 -0.7 -3.7 TetR/AcrR family transcriptional regulator compare
LRK53_RS03245 -0.7 -2.5 glycerophosphodiester phosphodiesterase compare
LRK53_RS02580 -0.7 -3.1 c-type cytochrome compare
LRK53_RS11380 -0.7 -2.9 molecular chaperone DnaJ compare
LRK53_RS14105 -0.7 -3.2 sensor histidine kinase compare
LRK53_RS12275 -0.7 -1.2 Smr/MutS family protein compare
LRK53_RS09350 -0.7 -1.8 LysR family transcriptional regulator compare
LRK53_RS02450 -0.7 -2.3 SPFH domain-containing protein compare
LRK53_RS02515 -0.7 -2.7 DUF488 family protein compare
LRK53_RS00500 -0.7 -2.4 class I SAM-dependent methyltransferase compare
LRK53_RS01230 -0.6 -1.6 hypothetical protein compare
LRK53_RS18120 -0.6 -0.9 energy transducer TonB compare
LRK53_RS07955 -0.6 -1.6 5'-nucleotidase compare
LRK53_RS04695 -0.6 -2.3 homoserine O-succinyltransferase compare
LRK53_RS11025 -0.6 -1.4 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For biofilm assay; planktonic sample Aluminum chloride hydrate in Rhodanobacter sp000427505 FW510-R12

For biofilm assay; planktonic sample Aluminum chloride hydrate across organisms