Experiment set1S555 for Paraburkholderia sabiae LMG 24235

Compare to:

L-Histidine carbon source

200 most important genes:

  gene name fitness t score description  
QEN71_RS37555 -6.1 -4.2 response regulator compare
QEN71_RS27005 -4.1 -8.2 type I glyceraldehyde-3-phosphate dehydrogenase compare
QEN71_RS23505 -4.0 -15.7 urocanate hydratase compare
QEN71_RS21975 -4.0 -7.2 endopeptidase La compare
QEN71_RS23495 -4.0 -6.6 imidazolonepropionase conserved
QEN71_RS23490 -3.9 -11.8 formimidoylglutamate deiminase conserved
QEN71_RS22400 -3.9 -13.5 threonine synthase compare
QEN71_RS24970 -3.7 -9.0 argininosuccinate lyase compare
QEN71_RS04070 -3.7 -13.6 prephenate dehydratase compare
QEN71_RS01445 -3.7 -5.8 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
QEN71_RS17640 -3.6 -12.6 phosphoribosylanthranilate isomerase compare
QEN71_RS28035 -3.6 -13.6 3-dehydroquinate synthase compare
QEN71_RS02440 -3.6 -4.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
QEN71_RS11760 -3.6 -1.7 tautomerase family protein compare
QEN71_RS26600 -3.5 -9.1 pyrroline-5-carboxylate reductase compare
QEN71_RS04710 -3.5 -17.1 trehalose-phosphatase compare
QEN71_RS09235 -3.4 -13.5 argininosuccinate synthase compare
QEN71_RS28080 -3.4 -14.0 diaminopimelate decarboxylase compare
QEN71_RS24215 -3.4 -12.7 ketol-acid reductoisomerase compare
QEN71_RS24165 -3.4 -11.4 triose-phosphate isomerase compare
QEN71_RS27565 -3.4 -9.9 indole-3-glycerol phosphate synthase TrpC compare
QEN71_RS01990 -3.3 -22.6 FAD/FMN-binding oxidoreductase compare
QEN71_RS00180 -3.3 -4.0 DUF4390 domain-containing protein compare
QEN71_RS05215 -3.3 -12.3 chorismate synthase compare
QEN71_RS24225 -3.3 -18.8 acetolactate synthase 3 catalytic subunit compare
QEN71_RS27550 -3.3 -20.5 anthranilate synthase component I compare
QEN71_RS02785 -3.2 -16.6 ornithine carbamoyltransferase compare
QEN71_RS17655 -3.2 -14.9 tryptophan synthase subunit alpha compare
QEN71_RS01985 -3.2 -17.7 threonine ammonia-lyase, biosynthetic compare
QEN71_RS22405 -3.2 -17.4 homoserine dehydrogenase compare
QEN71_RS23485 -3.1 -12.7 N-formylglutamate deformylase conserved
QEN71_RS28715 -3.1 -6.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
QEN71_RS17680 -3.1 -17.9 amidophosphoribosyltransferase compare
QEN71_RS17850 -3.1 -6.5 homoserine kinase compare
QEN71_RS04065 -3.0 -13.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
QEN71_RS23515 -3.0 -8.0 histidine ammonia-lyase compare
QEN71_RS06455 -3.0 -9.2 RIP metalloprotease RseP compare
QEN71_RS22160 -3.0 -17.0 phosphoserine phosphatase SerB compare
QEN71_RS26895 -3.0 -7.1 LysR substrate-binding domain-containing protein compare
QEN71_RS26235 -3.0 -5.9 serine hydroxymethyltransferase compare
QEN71_RS00290 -2.9 -17.1 homoserine O-acetyltransferase compare
QEN71_RS21920 -2.9 -20.3 phosphoribosylformylglycinamidine synthase compare
QEN71_RS01465 -2.9 -19.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
QEN71_RS26780 -2.9 -2.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
QEN71_RS26445 -2.9 -17.1 phosphoribosylformylglycinamidine cyclo-ligase compare
QEN71_RS28040 -2.9 -9.7 shikimate kinase compare
QEN71_RS17605 -2.9 -8.3 3-isopropylmalate dehydratase large subunit compare
QEN71_RS21980 -2.8 -3.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
QEN71_RS27560 -2.8 -10.6 anthranilate phosphoribosyltransferase compare
QEN71_RS17645 -2.8 -9.6 tryptophan synthase subunit beta compare
QEN71_RS17615 -2.7 -5.2 3-isopropylmalate dehydratase small subunit compare
QEN71_RS04085 -2.7 -9.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
QEN71_RS03005 -2.7 -5.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
QEN71_RS17620 -2.7 -6.8 3-isopropylmalate dehydrogenase compare
QEN71_RS21425 -2.6 -10.9 HAMP domain-containing sensor histidine kinase compare
QEN71_RS02425 -2.6 -3.0 phosphoglycerate kinase compare
QEN71_RS25710 -2.6 -6.1 GNAT family N-acetyltransferase compare
QEN71_RS24400 -2.5 -6.9 phosphoribosylamine--glycine ligase compare
QEN71_RS25715 -2.5 -4.5 acetyltransferase compare
QEN71_RS20840 -2.5 -5.7 DUF1109 domain-containing protein compare
QEN71_RS06310 -2.5 -1.7 lysophospholipid transporter LplT compare
QEN71_RS39815 -2.5 -1.9 IS5/IS1182 family transposase compare
QEN71_RS26275 -2.4 -4.6 tol-pal system protein YbgF compare
QEN71_RS27270 -2.4 -9.8 glutamate 5-kinase compare
QEN71_RS37935 -2.4 -2.3 efflux transporter outer membrane subunit compare
QEN71_RS29955 -2.4 -4.5 IclR family transcriptional regulator compare
QEN71_RS25260 -2.4 -12.0 CysB family HTH-type transcriptional regulator compare
QEN71_RS04575 -2.4 -5.9 RNA polymerase sigma factor RpoE compare
QEN71_RS25690 -2.4 -3.9 glycosyltransferase family 4 protein compare
QEN71_RS17545 -2.4 -3.7 hypothetical protein compare
QEN71_RS05840 -2.4 -2.7 regulator compare
QEN71_RS35720 -2.3 -6.0 LacI family DNA-binding transcriptional regulator compare
QEN71_RS19730 -2.3 -8.8 LysR family transcriptional regulator compare
QEN71_RS06190 -2.3 -2.2 C40 family peptidase compare
QEN71_RS27920 -2.3 -4.1 ABC transporter ATP-binding protein compare
QEN71_RS27915 -2.3 -3.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
QEN71_RS24235 -2.3 -3.9 DUF3619 family protein compare
QEN71_RS19725 -2.3 -10.8 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
QEN71_RS27895 -2.3 -2.1 STAS domain-containing protein compare
QEN71_RS14575 -2.3 -1.3 hypothetical protein compare
QEN71_RS01460 -2.2 -6.7 protein-export chaperone SecB compare
QEN71_RS27555 -2.2 -3.5 aminodeoxychorismate/anthranilate synthase component II compare
QEN71_RS35790 -2.2 -10.2 LacI family DNA-binding transcriptional regulator compare
QEN71_RS04080 -2.2 -7.1 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
QEN71_RS17880 -2.2 -14.4 TIGR00730 family Rossman fold protein compare
QEN71_RS38370 -2.1 -4.0 helix-turn-helix domain-containing protein compare
QEN71_RS05685 -2.1 -1.5 tRNA-Met compare
QEN71_RS29440 -2.1 -13.6 response regulator transcription factor compare
QEN71_RS25725 -2.1 -10.1 ABC transporter ATP-binding protein compare
QEN71_RS27675 -2.1 -3.3 peptide chain release factor N(5)-glutamine methyltransferase compare
QEN71_RS25720 -2.1 -5.2 SAM-dependent methyltransferase compare
QEN71_RS05720 -2.1 -16.1 oxygen sensor histidine kinase FixL compare
QEN71_RS39265 -2.0 -1.4 LysR family transcriptional regulator compare
QEN71_RS38570 -2.0 -1.9 TetR/AcrR family transcriptional regulator compare
QEN71_RS27785 -2.0 -2.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
QEN71_RS01805 -2.0 -11.2 formyltetrahydrofolate deformylase compare
QEN71_RS27900 -2.0 -5.0 ABC transporter substrate-binding protein compare
QEN71_RS15805 -2.0 -3.9 cyclic peptide export ABC transporter compare
QEN71_RS25700 -2.0 -4.0 DegT/DnrJ/EryC1/StrS family aminotransferase compare
QEN71_RS24160 -2.0 -3.4 preprotein translocase subunit SecG compare
QEN71_RS25695 -2.0 -7.9 glycosyltransferase family 4 protein compare
QEN71_RS37615 -2.0 -1.6 DoxX family protein compare
QEN71_RS25630 -2.0 -4.3 NAD-dependent epimerase/dehydratase family protein compare
QEN71_RS22330 -2.0 -3.1 glycosyltransferase family 39 protein compare
QEN71_RS24090 -2.0 -12.5 NADH-quinone oxidoreductase subunit M compare
QEN71_RS24240 -2.0 -7.1 DUF3106 domain-containing protein compare
QEN71_RS09470 -1.9 -2.6 hypothetical protein compare
QEN71_RS30540 -1.9 -2.1 enoyl-CoA hydratase/isomerase family protein compare
QEN71_RS06040 -1.9 -12.7 potassium transporter Kup compare
QEN71_RS28635 -1.9 -14.2 lytic transglycosylase domain-containing protein compare
QEN71_RS42390 -1.9 -1.3 nitrogenase iron protein compare
QEN71_RS24220 -1.9 -4.2 acetolactate synthase small subunit compare
QEN71_RS03220 -1.9 -8.2 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
QEN71_RS11365 -1.9 -1.3 hypothetical protein compare
QEN71_RS03930 -1.8 -9.6 disulfide bond formation protein B compare
QEN71_RS25425 -1.8 -3.9 glycosyltransferase compare
QEN71_RS07730 -1.7 -5.3 ABC transporter permease subunit compare
QEN71_RS25485 -1.7 -1.2 ATP-binding protein compare
QEN71_RS23000 -1.7 -7.5 anti-sigma factor compare
QEN71_RS25730 -1.7 -5.1 ABC transporter permease compare
QEN71_RS25420 -1.7 -5.6 oligosaccharide flippase family protein compare
QEN71_RS02450 -1.7 -2.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
QEN71_RS06050 -1.7 -7.8 colicin transporter compare
QEN71_RS26545 -1.7 -12.7 AsmA-like C-terminal region-containing protein compare
QEN71_RS05480 -1.7 -12.5 phosphomethylpyrimidine synthase ThiC compare
QEN71_RS16000 -1.7 -1.3 LysR substrate-binding domain-containing protein compare
QEN71_RS38150 -1.6 -1.3 hypothetical protein compare
QEN71_RS01545 -1.6 -4.1 heme o synthase compare
QEN71_RS32145 -1.6 -1.4 5'/3'-nucleotidase SurE compare
QEN71_RS00185 -1.6 -5.6 PAS domain-containing sensor histidine kinase compare
QEN71_RS01440 -1.6 -3.9 S41 family peptidase compare
QEN71_RS03520 -1.5 -6.4 septum site-determining protein MinD compare
QEN71_RS38555 -1.5 -3.3 substrate-binding domain-containing protein compare
QEN71_RS01820 -1.5 -11.3 AI-2E family transporter compare
QEN71_RS16170 -1.5 -2.4 periplasmic heavy metal sensor compare
QEN71_RS09900 -1.5 -2.0 hypothetical protein compare
QEN71_RS26480 -1.5 -2.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
QEN71_RS15815 -1.5 -4.4 siderophore-iron reductase FhuF compare
QEN71_RS26195 -1.5 -2.8 phage holin family protein compare
QEN71_RS00235 -1.4 -1.1 rod shape-determining protein MreD compare
QEN71_RS22680 -1.4 -3.0 ATP-binding cassette domain-containing protein compare
QEN71_RS24850 -1.4 -3.1 response regulator compare
QEN71_RS21935 -1.4 -4.9 glucose-6-phosphate isomerase compare
QEN71_RS38720 -1.4 -1.1 DUF1987 domain-containing protein compare
QEN71_RS42770 -1.4 -1.8 site-specific integrase compare
QEN71_RS25625 -1.4 -10.5 glycosyltransferase family 2 protein compare
QEN71_RS19420 -1.4 -4.2 p-hydroxycinnamoyl CoA hydratase/lyase compare
QEN71_RS21205 -1.4 -1.4 hypothetical protein compare
QEN71_RS01165 -1.4 -5.3 thiol:disulfide interchange protein DsbA/DsbL compare
QEN71_RS04765 -1.4 -12.1 transglycosylase SLT domain-containing protein compare
QEN71_RS02515 -1.4 -6.1 TetR family transcriptional regulator compare
QEN71_RS26855 -1.4 -2.0 dihydroorotase compare
QEN71_RS25220 -1.4 -1.9 CbiX/SirB N-terminal domain-containing protein compare
QEN71_RS01420 -1.4 -5.0 PTS sugar transporter subunit IIB compare
QEN71_RS17600 -1.4 -9.6 citrate synthase compare
QEN71_RS02355 -1.3 -10.9 succinate--CoA ligase subunit alpha compare
QEN71_RS34305 -1.3 -2.5 GntR family transcriptional regulator compare
QEN71_RS13090 -1.3 -2.6 sugar ABC transporter substrate-binding protein compare
QEN71_RS26465 -1.3 -2.6 polynucleotide adenylyltransferase PcnB compare
QEN71_RS02620 -1.3 -1.4 sugar-binding transcriptional regulator compare
QEN71_RS27025 -1.3 -7.9 barstar family protein compare
QEN71_RS03515 -1.3 -3.8 septum site-determining protein MinC compare
QEN71_RS02350 -1.3 -10.8 ADP-forming succinate--CoA ligase subunit beta compare
QEN71_RS01430 -1.3 -2.9 phosphoenolpyruvate--protein phosphotransferase compare
QEN71_RS04495 -1.3 -1.9 Rne/Rng family ribonuclease compare
QEN71_RS02105 -1.3 -9.3 nucleotidyltransferase family protein compare
QEN71_RS04235 -1.3 -5.3 CobD/CbiB family protein compare
QEN71_RS10610 -1.3 -1.9 nuclear transport factor 2 family protein compare
QEN71_RS34680 -1.3 -1.8 proline dehydrogenase family protein compare
QEN71_RS23045 -1.3 -7.6 cell division protein ZapE compare
QEN71_RS40875 -1.3 -0.9 hypothetical protein compare
QEN71_RS25705 -1.3 -2.7 FdtA/QdtA family cupin domain-containing protein compare
QEN71_RS07735 -1.2 -4.7 ABC transporter permease subunit conserved
QEN71_RS24430 -1.2 -4.6 ribonuclease G compare
QEN71_RS34025 -1.2 -1.3 formylmethanofuran--tetrahydromethanopterin N-formyltransferase compare
QEN71_RS40765 -1.2 -2.0 helix-turn-helix domain-containing protein compare
QEN71_RS11925 -1.2 -2.0 LysE family translocator compare
QEN71_RS11215 -1.2 -2.2 RidA family protein compare
QEN71_RS36300 -1.2 -1.4 HU family DNA-binding protein compare
QEN71_RS23070 -1.2 -2.1 MarR family winged helix-turn-helix transcriptional regulator compare
QEN71_RS26045 -1.2 -2.1 hypothetical protein compare
QEN71_RS09130 -1.2 -1.8 ABC transporter permease compare
QEN71_RS09560 -1.2 -2.9 antibiotic biosynthesis monooxygenase compare
QEN71_RS29445 -1.2 -7.5 sensor histidine kinase compare
QEN71_RS22195 -1.2 -4.7 3-ketoacyl-ACP reductase compare
QEN71_RS25255 -1.2 -6.7 nitrite/sulfite reductase compare
QEN71_RS31400 -1.2 -1.6 SDR family oxidoreductase compare
QEN71_RS16440 -1.1 -2.0 presqualene diphosphate synthase HpnD compare
QEN71_RS24945 -1.1 -3.6 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
QEN71_RS02055 -1.1 -6.8 TetR/AcrR family transcriptional regulator compare
QEN71_RS05080 -1.1 -5.4 MurR/RpiR family transcriptional regulator compare
QEN71_RS25675 -1.1 -7.8 hypothetical protein compare
QEN71_RS43425 -1.1 -1.4 hypothetical protein compare
QEN71_RS18635 -1.1 -1.0 hypothetical protein compare
QEN71_RS25250 -1.1 -3.8 DUF934 domain-containing protein compare
QEN71_RS01300 -1.1 -9.0 D-alanyl-D-alanine carboxypeptidase family protein compare
QEN71_RS28075 -1.1 -2.5 lipoprotein compare
QEN71_RS02175 -1.1 -3.1 HlyC/CorC family transporter compare
QEN71_RS07725 -1.1 -2.5 transporter substrate-binding domain-containing protein compare
QEN71_RS05530 -1.1 -6.0 response regulator compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source L-Histidine in Paraburkholderia sabiae LMG 24235

For carbon source L-Histidine across organisms