Experiment set1S555 for Paraburkholderia sabiae LMG 24235

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L-Histidine carbon source

Group: carbon source
Media: AB_minimal medium + L-Histidine (0.4 %)
Culturing: Psabiae_ML3b, tube, Aerobic, at 28 (C), shaken=180 rpm
By: Marta Torres on 12/5/24

Specific Phenotypes

For 9 genes in this experiment

For carbon source L-Histidine in Paraburkholderia sabiae LMG 24235

For carbon source L-Histidine across organisms

SEED Subsystems

Subsystem #Specific
Histidine Degradation 3
Branched-Chain Amino Acid Biosynthesis 1
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis 1
Methionine Biosynthesis 1
One-carbon metabolism by tetrahydropterines 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-histidine degradation II 5 5 3
S-adenosyl-L-methionine salvage II 3 3 1
formaldehyde oxidation VII (THF pathway) 4 4 1
L-methionine biosynthesis III 4 4 1
S-adenosyl-L-methionine salvage I 4 3 1
L-histidine degradation I 4 3 1
L-methionine biosynthesis I 5 4 1
seleno-amino acid biosynthesis (plants) 5 3 1
L-methionine biosynthesis II 6 5 1
L-histidine degradation III 6 4 1
L-histidine degradation VI 8 7 1
superpathway of L-homoserine and L-methionine biosynthesis 8 7 1
superpathway of S-adenosyl-L-methionine biosynthesis 9 8 1
superpathway of L-methionine biosynthesis (transsulfuration) 9 8 1
superpathway of L-methionine biosynthesis (by sulfhydrylation) 12 12 1
folate transformations I 13 9 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II 15 13 1
purine nucleobases degradation I (anaerobic) 15 6 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I 18 17 1
superpathway of seleno-compound metabolism 19 8 1
purine nucleobases degradation II (anaerobic) 24 16 1
aspartate superpathway 25 24 1