Experiment set1S546 for Rhodanobacter sp000427505 FW510-R12

Compare to:

biofilm; Day1; NLDM;

200 most detrimental genes:

  gene name fitness t score description  
LRK53_RS18170 +2.3 3.6 HAMP domain-containing histidine kinase compare
LRK53_RS13565 +1.6 2.3 isocitrate dehydrogenase compare
LRK53_RS00915 +1.4 2.5 Na+/H+ antiporter subunit C compare
LRK53_RS15000 +1.4 2.8 P-loop NTPase compare
LRK53_RS00940 +1.4 1.4 hypothetical protein compare
LRK53_RS12970 +1.3 1.7 RNA 2',3'-cyclic phosphodiesterase compare
LRK53_RS15875 +1.2 1.6 hypothetical protein compare
LRK53_RS18025 +1.2 1.0 hypothetical protein compare
LRK53_RS02990 +1.1 1.9 pyridoxal-phosphate dependent enzyme compare
LRK53_RS04815 +1.1 2.7 IS5 family transposase compare
LRK53_RS17625 +1.0 1.5 benenodin family lasso peptide compare
LRK53_RS18770 +1.0 1.9 hypothetical protein compare
LRK53_RS13200 +1.0 1.8 hypothetical protein compare
LRK53_RS04145 +1.0 2.1 hypothetical protein compare
LRK53_RS07245 +1.0 1.5 ribosome silencing factor compare
LRK53_RS17340 +0.9 2.0 arginase compare
LRK53_RS16345 +0.9 1.9 hypothetical protein compare
LRK53_RS05685 +0.9 7.2 type IV pilus twitching motility protein PilT compare
LRK53_RS15060 +0.9 1.1 flagellar export protein FliJ compare
LRK53_RS05615 +0.8 2.0 WGR domain-containing protein compare
LRK53_RS00375 +0.8 2.3 NAD(P)-dependent oxidoreductase compare
LRK53_RS00380 +0.8 0.7 DUF308 domain-containing protein compare
LRK53_RS18700 +0.8 2.3 H-NS histone family protein compare
LRK53_RS15675 +0.8 2.3 BolA/IbaG family iron-sulfur metabolism protein compare
LRK53_RS17460 +0.8 1.2 alpha/beta hydrolase-fold protein compare
LRK53_RS07775 +0.8 3.3 helix-turn-helix domain-containing protein compare
LRK53_RS07980 +0.8 1.4 GNAT family N-acetyltransferase compare
LRK53_RS10680 +0.8 2.0 electron transfer flavoprotein subunit beta/FixA family protein compare
LRK53_RS19125 +0.8 2.0 GPI inositol-deacylase compare
LRK53_RS17605 +0.8 2.0 OmpH family outer membrane protein compare
LRK53_RS07635 +0.8 1.9 FUSC family protein compare
LRK53_RS07025 +0.8 0.7 ABC transporter ATP-binding protein compare
LRK53_RS00740 +0.8 1.6 MarR family transcriptional regulator compare
LRK53_RS13670 +0.8 1.7 acetyl-CoA C-acetyltransferase compare
LRK53_RS14135 +0.8 2.3 putative cation transport regulator ChaB compare
LRK53_RS18800 +0.7 1.8 carbon storage regulator compare
LRK53_RS05930 +0.7 1.1 endonuclease domain-containing protein compare
LRK53_RS04510 +0.7 2.9 energy transducer TonB compare
LRK53_RS09780 +0.7 0.8 tRNA-Gly compare
LRK53_RS16510 +0.7 0.8 DUF4124 domain-containing protein compare
LRK53_RS04505 +0.7 1.2 met regulon transcriptional regulator MetJ compare
LRK53_RS13655 +0.7 1.8 SCP2 sterol-binding domain-containing protein compare
LRK53_RS00125 +0.7 2.1 GntR family transcriptional regulator compare
LRK53_RS00995 +0.7 2.5 hypothetical protein compare
LRK53_RS06990 +0.7 2.9 hypothetical protein compare
LRK53_RS02075 +0.7 2.5 hypothetical protein compare
LRK53_RS13705 +0.7 1.8 response regulator compare
LRK53_RS02350 +0.7 1.8 hypothetical protein compare
LRK53_RS18295 +0.7 1.2 hypothetical protein compare
LRK53_RS00160 +0.7 2.6 YafY family transcriptional regulator compare
LRK53_RS17895 +0.7 0.6 phosphomannomutase/phosphoglucomutase compare
LRK53_RS07795 +0.7 2.4 GspH/FimT family pseudopilin compare
LRK53_RS12800 +0.7 1.7 DUF4190 domain-containing protein compare
LRK53_RS16055 +0.6 2.1 hypothetical protein compare
LRK53_RS06635 +0.6 2.1 hypothetical protein compare
LRK53_RS13850 +0.6 2.7 peptidylprolyl isomerase compare
LRK53_RS19135 +0.6 1.5 hypothetical protein compare
LRK53_RS17325 +0.6 2.4 hypothetical protein compare
LRK53_RS02405 +0.6 1.2 YecA family protein compare
LRK53_RS15135 +0.6 1.3 flagellar assembly peptidoglycan hydrolase FlgJ compare
LRK53_RS12245 +0.6 1.3 ribosome assembly RNA-binding protein YhbY compare
LRK53_RS12000 +0.6 1.9 sigma-E factor negative regulatory protein compare
LRK53_RS03775 +0.6 1.8 DUF938 domain-containing protein compare
LRK53_RS16790 +0.6 1.2 YicC family protein compare
LRK53_RS01980 +0.6 2.2 very short patch repair endonuclease compare
LRK53_RS14715 +0.6 1.4 zinc-binding protein compare
LRK53_RS05135 +0.6 2.6 tol-pal system-associated acyl-CoA thioesterase compare
LRK53_RS09605 +0.6 2.3 hypothetical protein compare
LRK53_RS01120 +0.6 1.0 VanZ family protein compare
LRK53_RS03245 +0.6 2.2 glycerophosphodiester phosphodiesterase compare
LRK53_RS03510 +0.6 2.2 DUF2269 domain-containing protein compare
LRK53_RS10460 +0.6 3.7 ribosome-associated ATPase/putative transporter RbbA compare
LRK53_RS03970 +0.6 0.9 hypothetical protein compare
LRK53_RS13260 +0.6 1.0 NAD(P)-dependent alcohol dehydrogenase compare
LRK53_RS18755 +0.6 1.5 hypothetical protein compare
LRK53_RS09415 +0.6 2.2 peptidylprolyl isomerase compare
LRK53_RS01395 +0.6 2.5 hypothetical protein compare
LRK53_RS06595 +0.6 1.5 DUF4870 domain-containing protein compare
LRK53_RS13150 +0.6 3.2 GGDEF domain-containing protein compare
LRK53_RS13230 +0.6 2.2 hypothetical protein compare
LRK53_RS10155 +0.6 1.8 phenol hydroxylase subunit P4 compare
LRK53_RS10160 +0.6 1.3 2Fe-2S iron-sulfur cluster-binding protein compare
LRK53_RS13345 +0.6 2.4 M48 family metallopeptidase compare
LRK53_RS02855 +0.6 1.0 tetratricopeptide repeat protein compare
LRK53_RS11915 +0.5 1.3 cold-shock protein compare
LRK53_RS18285 +0.5 1.3 hypothetical protein compare
LRK53_RS09665 +0.5 1.3 hypothetical protein compare
LRK53_RS08470 +0.5 0.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
LRK53_RS14445 +0.5 2.0 TIGR00730 family Rossman fold protein compare
LRK53_RS07105 +0.5 1.4 RNA polymerase-associated protein RapA compare
LRK53_RS14670 +0.5 1.4 purine-nucleoside phosphorylase compare
LRK53_RS00985 +0.5 1.6 hypothetical protein compare
LRK53_RS03610 +0.5 1.9 hypothetical protein compare
LRK53_RS12650 +0.5 2.8 glycine zipper 2TM domain-containing protein compare
LRK53_RS00510 +0.5 1.9 class I SAM-dependent methyltransferase compare
LRK53_RS14010 +0.5 1.3 N-acetylmuramoyl-L-alanine amidase compare
LRK53_RS07695 +0.5 0.7 enoyl-CoA hydratase-related protein compare
LRK53_RS05840 +0.5 2.2 HAMP domain-containing histidine kinase compare
LRK53_RS03870 +0.5 1.9 DUF3375 domain-containing protein compare
LRK53_RS02080 +0.5 2.4 hypothetical protein compare
LRK53_RS14390 +0.5 2.4 universal stress protein compare
LRK53_RS10685 +0.5 2.2 hypothetical protein compare
LRK53_RS08230 +0.5 2.0 DUF2147 domain-containing protein compare
LRK53_RS09955 +0.5 0.6 thioredoxin family protein compare
LRK53_RS04645 +0.5 2.7 DUF6516 family protein compare
LRK53_RS12580 +0.5 1.0 biopolymer transporter ExbD compare
LRK53_RS08730 +0.5 0.9 hypothetical protein compare
LRK53_RS08450 +0.5 1.1 YerC/YecD family TrpR-related protein compare
LRK53_RS08660 +0.5 1.3 YajG family lipoprotein compare
LRK53_RS09925 +0.5 1.5 Hg(II)-responsive transcriptional regulator compare
LRK53_RS12530 +0.5 1.4 hypothetical protein compare
LRK53_RS05690 +0.5 3.1 PilT/PilU family type 4a pilus ATPase compare
LRK53_RS17565 +0.5 1.6 DUF2127 domain-containing protein compare
LRK53_RS07665 +0.5 1.0 glutathione S-transferase family protein compare
LRK53_RS09255 +0.5 2.7 ABC-2 transporter permease compare
LRK53_RS05565 +0.5 0.6 H-NS histone family protein compare
LRK53_RS17475 +0.5 1.9 CPXCG motif-containing cysteine-rich protein compare
LRK53_RS03070 +0.5 2.4 GGDEF domain-containing protein compare
LRK53_RS18300 +0.5 1.4 hypothetical protein compare
LRK53_RS18475 +0.5 2.5 DNA-binding protein compare
LRK53_RS07985 +0.5 1.2 hypothetical protein compare
LRK53_RS04260 +0.5 2.0 DUF962 domain-containing protein compare
LRK53_RS16370 +0.5 1.7 3-isopropylmalate dehydratase small subunit compare
LRK53_RS00295 +0.5 0.7 hypothetical protein compare
LRK53_RS15100 +0.4 1.2 flagellar protein FliT compare
LRK53_RS07145 +0.4 1.5 thioredoxin compare
LRK53_RS14020 +0.4 2.8 DUF2007 domain-containing protein compare
LRK53_RS08250 +0.4 0.9 HIT family protein compare
LRK53_RS07330 +0.4 2.8 C40 family peptidase compare
LRK53_RS18860 +0.4 0.6 hypothetical protein compare
LRK53_RS05410 +0.4 0.6 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
LRK53_RS13095 +0.4 0.6 AzlD domain-containing protein compare
LRK53_RS14400 +0.4 0.4 TetR family transcriptional regulator compare
LRK53_RS13255 +0.4 1.4 hypothetical protein compare
LRK53_RS13520 +0.4 1.4 hypothetical protein compare
LRK53_RS13960 +0.4 1.2 LysE family transporter compare
LRK53_RS17965 +0.4 1.3 hypothetical protein compare
LRK53_RS18610 +0.4 1.1 response regulator transcription factor compare
LRK53_RS05360 +0.4 1.0 peptide deformylase compare
LRK53_RS11635 +0.4 1.0 M48 family metallopeptidase compare
LRK53_RS02465 +0.4 2.0 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
LRK53_RS08600 +0.4 2.1 phosphatase PAP2 family protein compare
LRK53_RS17720 +0.4 1.8 Do family serine endopeptidase compare
LRK53_RS01330 +0.4 1.4 hypothetical protein compare
LRK53_RS04650 +0.4 2.4 M20/M25/M40 family metallo-hydrolase compare
LRK53_RS12285 +0.4 1.2 magnesium transporter compare
LRK53_RS02095 +0.4 0.8 helix-turn-helix domain-containing protein compare
LRK53_RS11260 +0.4 1.6 DNA-3-methyladenine glycosylase compare
LRK53_RS18205 +0.4 1.2 PRTRC system protein A compare
LRK53_RS12270 +0.4 1.7 5'/3'-nucleotidase SurE compare
LRK53_RS12885 +0.4 0.9 GNAT family N-acetyltransferase compare
LRK53_RS19075 +0.4 1.5 DUF262 domain-containing protein compare
LRK53_RS06900 +0.4 1.5 2-dehydropantoate 2-reductase compare
LRK53_RS12820 +0.4 2.0 transglycosylase SLT domain-containing protein compare
LRK53_RS01700 +0.4 0.3 glycosyltransferase compare
LRK53_RS15730 +0.4 0.9 HPr family phosphocarrier protein compare
LRK53_RS17595 +0.4 1.6 thiopurine S-methyltransferase compare
LRK53_RS02050 +0.4 2.1 hypothetical protein compare
LRK53_RS02720 +0.4 1.9 pseudouridine synthase compare
LRK53_RS07425 +0.4 0.7 cytochrome c biogenesis protein CcsA compare
LRK53_RS12565 +0.4 1.1 imidazolonepropionase compare
LRK53_RS00260 +0.4 1.1 YbhB/YbcL family Raf kinase inhibitor-like protein compare
LRK53_RS13305 +0.4 1.5 DUF3606 domain-containing protein compare
LRK53_RS08695 +0.4 2.3 amidophosphoribosyltransferase compare
LRK53_RS18595 +0.4 1.0 GtrA family protein compare
LRK53_RS14625 +0.4 1.1 hypothetical protein compare
LRK53_RS10635 +0.4 1.7 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS00435 +0.4 1.2 S8 family serine peptidase compare
LRK53_RS10965 +0.4 1.4 hypothetical protein compare
LRK53_RS10950 +0.4 1.1 DEAD/DEAH box helicase compare
LRK53_RS18210 +0.4 1.5 PRTRC system ThiF family protein compare
LRK53_RS08740 +0.4 1.5 hypothetical protein compare
LRK53_RS09110 +0.4 1.4 GtrA family protein compare
LRK53_RS16860 +0.4 0.3 cytochrome bd-I oxidase subunit CydX compare
LRK53_RS02925 +0.4 1.0 DNA-processing protein DprA compare
LRK53_RS04055 +0.4 1.7 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS01140 +0.4 1.6 complex I NDUFA9 subunit family protein compare
LRK53_RS17450 +0.4 1.3 FAD/NAD(P)-binding protein compare
LRK53_RS07020 +0.4 0.6 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK53_RS15315 +0.4 1.2 hypothetical protein compare
LRK53_RS05365 +0.4 2.3 DUF427 domain-containing protein compare
LRK53_RS00835 +0.4 1.3 ATP-dependent DNA helicase compare
LRK53_RS15805 +0.4 1.0 NAD(P)-binding domain-containing protein compare
LRK53_RS18980 +0.4 0.7 hypothetical protein compare
LRK53_RS06105 +0.4 1.6 RNA polymerase sigma factor compare
LRK53_RS08705 +0.4 1.6 ferritin-like domain-containing protein compare
LRK53_RS09030 +0.4 2.3 ABC transporter substrate-binding protein compare
LRK53_RS10450 +0.4 1.3 FUSC family protein compare
LRK53_RS05635 +0.4 0.6 YbjQ family protein compare
LRK53_RS06010 +0.4 2.9 pilin compare
LRK53_RS06505 +0.4 1.1 3-deoxy-7-phosphoheptulonate synthase class II compare
LRK53_RS12935 +0.4 2.6 GGDEF domain-containing protein compare
LRK53_RS02140 +0.4 1.3 hypothetical protein compare
LRK53_RS18910 +0.4 2.4 ParM/StbA family protein compare
LRK53_RS09270 +0.4 1.2 hypothetical protein compare
LRK53_RS16485 +0.4 0.7 GIY-YIG nuclease family protein compare
LRK53_RS02835 +0.4 1.2 ATP-dependent RNA helicase DbpA compare
LRK53_RS11130 +0.4 2.0 cupredoxin domain-containing protein compare
LRK53_RS13160 +0.4 2.0 MFS transporter compare
LRK53_RS17350 +0.4 0.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp000427505 FW510-R12 in biofilm assay; biofilm sample experiments