Experiment set1S543 for Rhodanobacter sp000427505 FW510-R12

Compare to:

planktonic; Day1; NLDM; Aluminum chloride hydrate 1mM

200 most important genes:

  gene name fitness t score description  
LRK53_RS12370 -5.3 -2.6 VOC family protein compare
LRK53_RS01530 -3.9 -1.2 YiiD C-terminal domain-containing protein compare
LRK53_RS10280 -3.5 -1.8 2-oxo-3-hexenedioate decarboxylase compare
LRK53_RS18830 -3.3 -2.2 TraV family lipoprotein compare
LRK53_RS10035 -3.1 -1.3 hypothetical protein compare
LRK53_RS00525 -3.0 -2.1 glycosyltransferase family 4 protein compare
LRK53_RS16510 -2.8 -1.2 DUF4124 domain-containing protein compare
LRK53_RS00760 -2.7 -1.8 DUF302 domain-containing protein compare
LRK53_RS06850 -2.5 -1.1 protein translocase subunit SecD compare
LRK53_RS14450 -2.4 -2.1 cytochrome c compare
LRK53_RS05740 -2.4 -1.3 chemotaxis protein CheW compare
LRK53_RS12880 -2.3 -2.0 hypothetical protein compare
LRK53_RS09240 -2.2 -2.1 DUF4386 domain-containing protein compare
LRK53_RS05465 -2.2 -3.0 hemin uptake protein HemP compare
LRK53_RS04445 -2.1 -1.5 glycoside hydrolase family 99-like domain-containing protein compare
LRK53_RS18960 -2.0 -1.7 hypothetical protein compare
LRK53_RS11300 -2.0 -3.3 polysaccharide biosynthesis protein compare
LRK53_RS09595 -2.0 -1.9 hypothetical protein compare
LRK53_RS09935 -2.0 -3.0 mercury resistance system periplasmic binding protein MerP compare
LRK53_RS11185 -2.0 -0.8 DUF4115 domain-containing protein compare
LRK53_RS05760 -1.9 -0.8 chemotaxis protein CheW compare
LRK53_RS12980 -1.9 -1.5 hypothetical protein compare
LRK53_RS15820 -1.9 -0.8 metal/formaldehyde-sensitive transcriptional repressor compare
LRK53_RS11025 -1.8 -2.2 hypothetical protein compare
LRK53_RS14840 -1.8 -1.7 trypsin-like peptidase domain-containing protein compare
LRK53_RS03330 -1.8 -1.7 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK53_RS04100 -1.7 -2.1 DUF3247 family protein compare
LRK53_RS07300 -1.6 -3.1 DEAD/DEAH box helicase compare
LRK53_RS00720 -1.6 -2.5 acyloxyacyl hydrolase compare
LRK53_RS15875 -1.6 -2.2 hypothetical protein compare
LRK53_RS11805 -1.6 -1.6 heavy metal translocating P-type ATPase compare
LRK53_RS16640 -1.6 -1.1 hypothetical protein compare
LRK53_RS14645 -1.6 -1.1 molybdopterin molybdotransferase MoeA compare
LRK53_RS15175 -1.6 -2.6 flagellar basal body rod protein FlgB compare
LRK53_RS03165 -1.5 -2.4 homoserine dehydrogenase compare
LRK53_RS02380 -1.5 -2.2 hypothetical protein compare
LRK53_RS05170 -1.5 -1.9 7-carboxy-7-deazaguanine synthase QueE compare
LRK53_RS18850 -1.5 -1.7 type IV conjugative transfer system protein TraL compare
LRK53_RS04860 -1.5 -2.0 transposase compare
LRK53_RS13780 -1.5 -2.6 acetoacetyl-CoA reductase compare
LRK53_RS14640 -1.5 -0.9 MoaD/ThiS family protein compare
LRK53_RS11825 -1.5 -2.2 exodeoxyribonuclease VII large subunit compare
LRK53_RS09730 -1.4 -3.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK53_RS03875 -1.4 -2.1 DUF4194 domain-containing protein compare
LRK53_RS00295 -1.4 -1.8 hypothetical protein compare
LRK53_RS05435 -1.4 -2.2 GNAT family N-acetyltransferase compare
LRK53_RS03360 -1.4 -2.0 P-II family nitrogen regulator compare
LRK53_RS08670 -1.4 -2.6 heavy metal-responsive transcriptional regulator compare
LRK53_RS08095 -1.4 -1.3 copper-binding protein compare
LRK53_RS06670 -1.3 -1.8 RIP metalloprotease RseP compare
LRK53_RS02785 -1.3 -3.3 ATP-dependent helicase HrpB compare
LRK53_RS05555 -1.3 -1.3 NfeD family protein compare
LRK53_RS19055 -1.3 -2.8 hypothetical protein compare
LRK53_RS14190 -1.3 -1.6 MAPEG family protein compare
LRK53_RS05470 -1.3 -3.5 hypothetical protein compare
LRK53_RS08820 -1.3 -0.9 YbaB/EbfC family nucleoid-associated protein compare
LRK53_RS10160 -1.3 -1.5 2Fe-2S iron-sulfur cluster-binding protein compare
LRK53_RS14770 -1.3 -1.9 SDR family NAD(P)-dependent oxidoreductase compare
LRK53_RS07245 -1.3 -1.2 ribosome silencing factor compare
LRK53_RS00135 -1.2 -5.3 patatin-like phospholipase family protein compare
LRK53_RS17885 -1.2 -1.4 orotate phosphoribosyltransferase compare
LRK53_RS07035 -1.2 -3.2 TolC family protein compare
LRK53_RS00405 -1.2 -1.4 trimeric intracellular cation channel family protein compare
LRK53_RS02535 -1.2 -5.9 DUF481 domain-containing protein compare
LRK53_RS06180 -1.2 -2.8 DUF779 domain-containing protein compare
LRK53_RS18995 -1.2 -1.0 hypothetical protein compare
LRK53_RS17625 -1.2 -1.4 benenodin family lasso peptide compare
LRK53_RS17325 -1.1 -2.9 hypothetical protein compare
LRK53_RS03145 -1.1 -2.9 IS1595 family transposase compare
LRK53_RS17185 -1.1 -1.9 copper-containing nitrite reductase compare
LRK53_RS15755 -1.1 -1.3 SDR family oxidoreductase compare
LRK53_RS14785 -1.1 -2.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
LRK53_RS03370 -1.1 -1.0 YifB family Mg chelatase-like AAA ATPase compare
LRK53_RS15000 -1.1 -1.5 P-loop NTPase compare
LRK53_RS05045 -1.1 -0.7 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
LRK53_RS14290 -1.1 -1.4 penicillin acylase family protein compare
LRK53_RS11140 -1.1 -1.1 hypothetical protein compare
LRK53_RS01745 -1.1 -5.6 TetR/AcrR family transcriptional regulator compare
LRK53_RS15605 -1.0 -1.7 MGMT family protein compare
LRK53_RS02855 -1.0 -1.2 tetratricopeptide repeat protein compare
LRK53_RS04950 -1.0 -1.0 carbohydrate kinase compare
LRK53_RS19175 -1.0 -1.1 hypothetical protein compare
LRK53_RS06860 -1.0 -2.0 nucleotidyltransferase family protein compare
LRK53_RS18155 -1.0 -0.8 hypothetical protein compare
LRK53_RS06275 -1.0 -2.6 acyl-CoA thioesterase compare
LRK53_RS16320 -1.0 -3.5 uracil-DNA glycosylase family protein compare
LRK53_RS01200 -1.0 -3.1 hypothetical protein compare
LRK53_RS01680 -1.0 -2.7 malonic semialdehyde reductase compare
LRK53_RS09170 -1.0 -1.8 cupin domain-containing protein compare
LRK53_RS19070 -1.0 -3.0 hypothetical protein compare
LRK53_RS05930 -1.0 -2.1 endonuclease domain-containing protein compare
LRK53_RS13655 -1.0 -1.0 SCP2 sterol-binding domain-containing protein compare
LRK53_RS04750 -1.0 -2.3 L-serine ammonia-lyase compare
LRK53_RS14470 -1.0 -3.0 PepSY domain-containing protein compare
LRK53_RS11480 -1.0 -1.9 hypothetical protein compare
LRK53_RS07255 -1.0 -3.1 GNAT family N-acetyltransferase compare
LRK53_RS14685 -1.0 -1.8 deoxyribose-phosphate aldolase compare
LRK53_RS00945 -1.0 -1.3 helix-turn-helix domain-containing protein compare
LRK53_RS16985 -1.0 -2.5 indole-3-glycerol phosphate synthase TrpC compare
LRK53_RS10245 -1.0 -3.0 FAD-binding oxidoreductase compare
LRK53_RS15035 -1.0 -1.1 flagellar biosynthetic protein FliO compare
LRK53_RS18395 -1.0 -1.2 DUF6338 family protein compare
LRK53_RS02990 -1.0 -0.8 pyridoxal-phosphate dependent enzyme compare
LRK53_RS15995 -0.9 -2.6 DUF58 domain-containing protein compare
LRK53_RS14100 -0.9 -1.4 response regulator transcription factor compare
LRK53_RS09420 -0.9 -1.1 YidB family protein compare
LRK53_RS11330 -0.9 -1.5 (d)CMP kinase compare
LRK53_RS11400 -0.9 -2.2 DNA repair protein RecN compare
LRK53_RS17410 -0.9 -1.0 DUF456 domain-containing protein compare
LRK53_RS18255 -0.9 -1.6 hypothetical protein compare
LRK53_RS11815 -0.9 -3.0 hypothetical protein compare
LRK53_RS14105 -0.9 -3.6 sensor histidine kinase compare
LRK53_RS16995 -0.9 -0.8 aminodeoxychorismate/anthranilate synthase component II compare
LRK53_RS02135 -0.9 -1.4 hypothetical protein compare
LRK53_RS15145 -0.9 -1.9 flagellar basal body L-ring protein FlgH compare
LRK53_RS07580 -0.9 -1.8 IS256 family transposase compare
LRK53_RS13695 -0.9 -1.3 response regulator compare
LRK53_RS07870 -0.9 -1.8 hypothetical protein compare
LRK53_RS14895 -0.9 -1.0 STAS domain-containing protein compare
LRK53_RS13795 -0.9 -1.0 cytochrome c compare
LRK53_RS00755 -0.9 -2.3 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS16495 -0.9 -2.4 adenosylhomocysteinase compare
LRK53_RS06580 -0.8 -3.0 metalloprotease PmbA compare
LRK53_RS05615 -0.8 -1.6 WGR domain-containing protein compare
LRK53_RS03850 -0.8 -2.1 HutD family protein compare
LRK53_RS00350 -0.8 -2.4 DoxX family protein compare
LRK53_RS17100 -0.8 -1.4 proteobacterial dedicated sortase system response regulator compare
LRK53_RS14865 -0.8 -1.6 CBS domain-containing protein compare
LRK53_RS14800 -0.8 -3.5 DUF1631 domain-containing protein compare
LRK53_RS07410 -0.8 -1.2 50S ribosomal protein L9 compare
LRK53_RS10455 -0.8 -2.8 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK53_RS15845 -0.8 -4.3 penicillin-binding protein 1B compare
LRK53_RS01570 -0.8 -1.2 DNA polymerase I compare
LRK53_RS03720 -0.8 -2.9 permease-like cell division protein FtsX compare
LRK53_RS08505 -0.7 -2.0 acireductone dioxygenase compare
LRK53_RS11075 -0.7 -1.8 thymidine phosphorylase family protein compare
LRK53_RS18385 -0.7 -1.7 hypothetical protein compare
LRK53_RS18765 -0.7 -3.4 RelA/SpoT domain-containing protein compare
LRK53_RS13035 -0.7 -1.3 hypothetical protein compare
LRK53_RS10085 -0.7 -0.8 TIGR04282 family arsenosugar biosynthesis glycosyltransferase compare
LRK53_RS15625 -0.7 -3.2 hemolysin family protein compare
LRK53_RS08080 -0.7 -2.9 TolC family protein compare
LRK53_RS08425 -0.7 -2.0 cation diffusion facilitator family transporter compare
LRK53_RS18670 -0.7 -1.6 translesion DNA synthesis-associated protein ImuA compare
LRK53_RS04200 -0.7 -0.9 hypothetical protein compare
LRK53_RS09995 -0.7 -3.3 hypothetical protein compare
LRK53_RS18605 -0.7 -3.8 HAMP domain-containing histidine kinase compare
LRK53_RS02455 -0.7 -1.4 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
LRK53_RS06835 -0.7 -1.6 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
LRK53_RS08400 -0.7 -2.8 HAMP domain-containing histidine kinase compare
LRK53_RS01695 -0.7 -1.9 zinc-finger domain-containing protein compare
LRK53_RS19045 -0.7 -2.2 hypothetical protein compare
LRK53_RS12110 -0.7 -5.3 transglycosylase SLT domain-containing protein compare
LRK53_RS09660 -0.7 -0.4 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
LRK53_RS11610 -0.7 -1.3 low molecular weight phosphotyrosine protein phosphatase compare
LRK53_RS07385 -0.7 -3.0 MalM family protein compare
LRK53_RS07145 -0.7 -1.6 thioredoxin compare
LRK53_RS12025 -0.7 -0.8 DUF2058 family protein compare
LRK53_RS18825 -0.7 -1.4 hypothetical protein compare
LRK53_RS09470 -0.7 -2.0 TerC family protein compare
LRK53_RS18130 -0.7 -1.3 lytic transglycosylase domain-containing protein compare
LRK53_RS15105 -0.7 -1.5 flagellar export chaperone FliS compare
LRK53_RS04580 -0.7 -0.7 sigma-70 family RNA polymerase sigma factor compare
LRK53_RS18610 -0.7 -1.2 response regulator transcription factor compare
LRK53_RS18435 -0.7 -1.7 replicative DNA helicase compare
LRK53_RS19150 -0.7 -1.6 hypothetical protein compare
LRK53_RS13165 -0.7 -2.2 alkyl hydroperoxide reductase compare
LRK53_RS07030 -0.7 -3.1 ABC transporter permease compare
LRK53_RS18205 -0.7 -1.5 PRTRC system protein A compare
LRK53_RS10230 -0.6 -3.4 site-specific integrase compare
LRK53_RS17865 -0.6 -1.0 anhydro-N-acetylmuramic acid kinase compare
LRK53_RS04145 -0.6 -1.9 hypothetical protein compare
LRK53_RS09455 -0.6 -2.0 dicarboxylate/amino acid:cation symporter compare
LRK53_RS02290 -0.6 -1.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
LRK53_RS09910 -0.6 -2.8 DNA polymerase Y family protein compare
LRK53_RS08480 -0.6 -1.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK53_RS00180 -0.6 -1.7 MbcA/ParS/Xre antitoxin family protein compare
LRK53_RS11280 -0.6 -1.1 MBL fold metallo-hydrolase compare
LRK53_RS19105 -0.6 -1.8 hypothetical protein compare
LRK53_RS02770 -0.6 -2.1 type II secretion system protein GspM compare
LRK53_RS04640 -0.6 -0.6 helix-turn-helix domain-containing protein compare
LRK53_RS15840 -0.6 -1.8 tetratricopeptide repeat protein compare
LRK53_RS03085 -0.6 -2.3 biosynthetic-type acetolactate synthase large subunit compare
LRK53_RS10255 -0.6 -2.3 catechol 2,3-dioxygenase compare
LRK53_RS00475 -0.6 -2.0 DegT/DnrJ/EryC1/StrS family aminotransferase compare
LRK53_RS08175 -0.6 -1.4 methyl-accepting chemotaxis protein compare
LRK53_RS09575 -0.6 -1.1 hypothetical protein compare
LRK53_RS09980 -0.6 -0.5 hypothetical protein compare
LRK53_RS10975 -0.6 -1.8 hypothetical protein compare
LRK53_RS16865 -0.6 -2.9 aminopeptidase P N-terminal domain-containing protein compare
LRK53_RS01120 -0.6 -1.0 VanZ family protein compare
LRK53_RS13045 -0.6 -1.9 hypothetical protein compare
LRK53_RS14740 -0.6 -2.2 helix-turn-helix domain-containing protein compare
LRK53_RS13635 -0.6 -1.0 recombination regulator RecX compare
LRK53_RS00515 -0.6 -3.4 B12-binding domain-containing radical SAM protein compare
LRK53_RS11420 -0.6 -2.1 outer membrane protein assembly factor BamE compare
LRK53_RS12670 -0.6 -2.0 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS04405 -0.6 -3.4 glycosyltransferase compare
LRK53_RS15915 -0.6 -2.0 DUF1801 domain-containing protein compare
LRK53_RS11950 -0.6 -2.3 YdbL family protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp000427505 FW510-R12 in biofilm assay; planktonic sample experiments

For biofilm assay; planktonic sample Aluminum chloride hydrate across organisms