Experiment set1S543 for Paraburkholderia sabiae LMG 24235

Compare to:

Filtered_supernatant_MT81_in_LB

200 most important genes:

  gene name fitness t score description  
QEN71_RS01445 -3.7 -7.9 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
QEN71_RS05840 -3.5 -2.4 regulator compare
QEN71_RS27005 -3.4 -8.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
QEN71_RS10030 -3.2 -3.8 hypothetical protein compare
QEN71_RS15805 -3.2 -6.8 cyclic peptide export ABC transporter compare
QEN71_RS27895 -3.2 -2.2 STAS domain-containing protein compare
QEN71_RS02425 -3.1 -3.7 phosphoglycerate kinase compare
QEN71_RS24165 -3.1 -11.4 triose-phosphate isomerase compare
QEN71_RS01820 -3.1 -18.6 AI-2E family transporter compare
QEN71_RS26780 -3.1 -3.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
QEN71_RS24825 -3.1 -3.0 nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein compare
QEN71_RS01460 -3.0 -10.2 protein-export chaperone SecB compare
QEN71_RS01465 -3.0 -22.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
QEN71_RS21425 -2.9 -10.8 HAMP domain-containing sensor histidine kinase compare
QEN71_RS00650 -2.9 -14.1 septal ring lytic transglycosylase RlpA family protein compare
QEN71_RS28065 -2.7 -2.6 penicillin-binding protein 1A compare
QEN71_RS25710 -2.7 -6.6 GNAT family N-acetyltransferase compare
QEN71_RS22510 -2.6 -3.9 anti-sigma factor compare
QEN71_RS27915 -2.6 -3.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
QEN71_RS27785 -2.5 -2.4 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
QEN71_RS06310 -2.5 -1.7 lysophospholipid transporter LplT compare
QEN71_RS25420 -2.5 -6.8 oligosaccharide flippase family protein compare
QEN71_RS25700 -2.4 -4.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
QEN71_RS16440 -2.4 -2.6 presqualene diphosphate synthase HpnD compare
QEN71_RS25630 -2.3 -4.4 NAD-dependent epimerase/dehydratase family protein compare
QEN71_RS06190 -2.3 -2.2 C40 family peptidase compare
QEN71_RS27900 -2.2 -5.3 ABC transporter substrate-binding protein compare
QEN71_RS24830 -2.2 -5.5 ABC transporter permease subunit compare
QEN71_RS25730 -2.2 -5.5 ABC transporter permease compare
QEN71_RS04575 -2.2 -6.2 RNA polymerase sigma factor RpoE compare
QEN71_RS24945 -2.2 -5.8 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
QEN71_RS25705 -2.2 -2.9 FdtA/QdtA family cupin domain-containing protein compare
QEN71_RS21935 -2.1 -5.7 glucose-6-phosphate isomerase compare
QEN71_RS00180 -2.1 -4.8 DUF4390 domain-containing protein compare
QEN71_RS04250 -2.1 -5.3 M48 family metallopeptidase compare
QEN71_RS25690 -2.1 -4.4 glycosyltransferase family 4 protein compare
QEN71_RS22330 -2.0 -3.0 glycosyltransferase family 39 protein compare
QEN71_RS21975 -2.0 -8.3 endopeptidase La compare
QEN71_RS25715 -2.0 -4.8 acetyltransferase compare
QEN71_RS27920 -2.0 -4.7 ABC transporter ATP-binding protein compare
QEN71_RS39815 -2.0 -1.8 IS5/IS1182 family transposase compare
QEN71_RS42390 -2.0 -1.4 nitrogenase iron protein compare
QEN71_RS17135 -2.0 -1.4 hypothetical protein compare
QEN71_RS00185 -1.9 -7.6 PAS domain-containing sensor histidine kinase compare
QEN71_RS36495 -1.9 -2.6 ornithine cyclodeaminase compare
QEN71_RS11760 -1.9 -2.4 tautomerase family protein compare
QEN71_RS14065 -1.9 -1.8 hypothetical protein compare
QEN71_RS37935 -1.9 -1.9 efflux transporter outer membrane subunit compare
QEN71_RS25720 -1.9 -5.2 SAM-dependent methyltransferase compare
QEN71_RS25725 -1.9 -9.7 ABC transporter ATP-binding protein compare
QEN71_RS06500 -1.9 -1.4 pyruvate, water dikinase regulatory protein compare
QEN71_RS25735 -1.8 -11.8 glycosyltransferase family 2 protein compare
QEN71_RS01430 -1.8 -3.7 phosphoenolpyruvate--protein phosphotransferase compare
QEN71_RS06505 -1.8 -5.6 phosphoenolpyruvate synthase compare
QEN71_RS31990 -1.8 -1.1 cupin domain-containing protein compare
QEN71_RS25695 -1.8 -7.0 glycosyltransferase family 4 protein compare
QEN71_RS10925 -1.8 -1.2 helix-turn-helix domain-containing protein compare
QEN71_RS10775 -1.8 -2.2 hypothetical protein compare
QEN71_RS25425 -1.8 -3.6 glycosyltransferase compare
QEN71_RS07820 -1.8 -6.8 cytochrome d ubiquinol oxidase subunit II compare
QEN71_RS07825 -1.7 -11.6 cytochrome ubiquinol oxidase subunit I compare
QEN71_RS36835 -1.7 -1.2 type III secretion system export apparatus subunit SctR compare
QEN71_RS21955 -1.7 -9.8 SurA N-terminal domain-containing protein compare
QEN71_RS03265 -1.7 -8.7 transglycosylase SLT domain-containing protein compare
QEN71_RS26950 -1.7 -2.3 LPS assembly lipoprotein LptE compare
QEN71_RS26855 -1.7 -2.2 dihydroorotase compare
QEN71_RS17545 -1.7 -3.3 hypothetical protein compare
QEN71_RS04710 -1.7 -10.6 trehalose-phosphatase compare
QEN71_RS26275 -1.7 -4.5 tol-pal system protein YbgF compare
QEN71_RS01420 -1.7 -6.0 PTS sugar transporter subunit IIB compare
QEN71_RS25625 -1.7 -12.7 glycosyltransferase family 2 protein compare
QEN71_RS23945 -1.7 -1.8 5S ribosomal RNA compare
QEN71_RS25600 -1.6 -11.5 SDR family oxidoreductase compare
QEN71_RS01440 -1.6 -4.3 S41 family peptidase compare
QEN71_RS22595 -1.6 -9.2 transcriptional repressor LexA compare
QEN71_RS01745 -1.6 -4.5 PTS sugar transporter subunit IIA compare
QEN71_RS26200 -1.5 -4.1 DUF3318 domain-containing protein compare
QEN71_RS03645 -1.5 -2.7 ribonuclease PH compare
QEN71_RS25605 -1.5 -12.9 glycosyltransferase family 2 protein compare
QEN71_RS02150 -1.5 -3.2 lysophospholipid acyltransferase family protein compare
QEN71_RS22400 -1.5 -8.0 threonine synthase compare
QEN71_RS27675 -1.5 -2.9 peptide chain release factor N(5)-glutamine methyltransferase compare
QEN71_RS44240 -1.5 -1.7 transposase compare
QEN71_RS36065 -1.4 -1.3 sugar ABC transporter substrate-binding protein compare
QEN71_RS25595 -1.4 -6.7 glycosyltransferase family 4 protein compare
QEN71_RS30785 -1.4 -1.6 DUF4148 domain-containing protein compare
QEN71_RS24090 -1.4 -9.4 NADH-quinone oxidoreductase subunit M compare
QEN71_RS15815 -1.4 -4.4 siderophore-iron reductase FhuF compare
QEN71_RS24940 -1.4 -7.2 heme biosynthesis protein HemY compare
QEN71_RS32485 -1.4 -1.6 aminotransferase class V-fold PLP-dependent enzyme compare
QEN71_RS29440 -1.4 -10.2 response regulator transcription factor compare
QEN71_RS38700 -1.4 -2.3 NnrU family protein compare
QEN71_RS18895 -1.4 -3.3 hypothetical protein compare
QEN71_RS26895 -1.4 -5.4 LysR substrate-binding domain-containing protein compare
QEN71_RS03260 -1.3 -3.6 UbiD family decarboxylase compare
QEN71_RS06455 -1.3 -5.2 RIP metalloprotease RseP compare
QEN71_RS34305 -1.3 -2.8 GntR family transcriptional regulator compare
QEN71_RS24160 -1.3 -2.3 preprotein translocase subunit SecG compare
QEN71_RS38865 -1.3 -3.4 Ohr family peroxiredoxin compare
QEN71_RS02355 -1.3 -11.3 succinate--CoA ligase subunit alpha compare
QEN71_RS00235 -1.3 -1.2 rod shape-determining protein MreD compare
QEN71_RS28105 -1.3 -1.6 c-type cytochrome compare
QEN71_RS40475 -1.3 -2.2 IS256 family transposase compare
QEN71_RS03005 -1.3 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
QEN71_RS18850 -1.3 -1.5 hemerythrin domain-containing protein compare
QEN71_RS26480 -1.3 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
QEN71_RS39265 -1.3 -1.1 LysR family transcriptional regulator compare
QEN71_RS34095 -1.3 -1.7 ATP-grasp domain-containing protein compare
QEN71_RS21155 -1.3 -3.9 acyl-CoA dehydrogenase family protein compare
QEN71_RS25590 -1.3 -9.6 nucleoside-diphosphate sugar epimerase/dehydratase compare
QEN71_RS29790 -1.2 -2.2 ABC transporter substrate-binding protein compare
QEN71_RS03450 -1.2 -1.5 efflux RND transporter periplasmic adaptor subunit compare
QEN71_RS02345 -1.2 -3.5 DUF2889 domain-containing protein compare
QEN71_RS33815 -1.2 -3.4 amino acid racemase compare
QEN71_RS24240 -1.2 -3.4 DUF3106 domain-containing protein compare
QEN71_RS21530 -1.2 -1.1 aspartate aminotransferase family protein compare
QEN71_RS21980 -1.2 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
QEN71_RS06050 -1.2 -5.7 colicin transporter compare
QEN71_RS03520 -1.2 -4.2 septum site-determining protein MinD compare
QEN71_RS25550 -1.2 -2.4 hypothetical protein compare
QEN71_RS02350 -1.2 -9.8 ADP-forming succinate--CoA ligase subunit beta compare
QEN71_RS06010 -1.1 -7.5 FtsH protease activity modulator HflK compare
QEN71_RS26625 -1.1 -7.3 LysR substrate-binding domain-containing protein compare
QEN71_RS11870 -1.1 -0.8 alkanesulfonate monooxygenase compare
QEN71_RS04450 -1.1 -1.5 lactate utilization protein C compare
QEN71_RS03515 -1.1 -3.1 septum site-determining protein MinC compare
QEN71_RS02370 -1.1 -8.3 Wzy polymerase domain-containing protein compare
QEN71_RS41560 -1.1 -2.4 hypothetical protein compare
QEN71_RS01655 -1.1 -8.3 maleylacetoacetate isomerase compare
QEN71_RS26545 -1.1 -8.9 AsmA-like C-terminal region-containing protein compare
QEN71_RS06015 -1.1 -6.2 protease modulator HflC compare
QEN71_RS20780 -1.1 -2.7 hypothetical protein compare
QEN71_RS23990 -1.1 -2.2 hypothetical protein compare
QEN71_RS38570 -1.1 -1.2 TetR/AcrR family transcriptional regulator compare
QEN71_RS17600 -1.1 -8.7 citrate synthase compare
QEN71_RS24400 -1.1 -4.9 phosphoribosylamine--glycine ligase compare
QEN71_RS32985 -1.1 -1.3 potassium channel family protein compare
QEN71_RS09145 -1.1 -1.7 NAD(P)H-binding protein compare
QEN71_RS42340 -1.1 -1.6 tyrosine-type recombinase/integrase compare
QEN71_RS36940 -1.0 -1.8 zinc-dependent alcohol dehydrogenase family protein compare
QEN71_RS03385 -1.0 -5.6 DNA translocase FtsK compare
QEN71_RS38905 -1.0 -1.3 sigma factor-like helix-turn-helix DNA-binding protein compare
QEN71_RS22250 -1.0 -5.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
QEN71_RS23540 -1.0 -3.2 metalloregulator ArsR/SmtB family transcription factor compare
QEN71_RS05985 -1.0 -2.1 tetratricopeptide repeat protein compare
QEN71_RS40750 -1.0 -3.1 low molecular weight phosphotyrosine protein phosphatase compare
QEN71_RS32530 -1.0 -1.3 flagellin domain-containing protein compare
QEN71_RS01060 -1.0 -8.1 hydroxymethylglutaryl-CoA lyase compare
QEN71_RS03455 -1.0 -1.1 multidrug efflux RND transporter permease subunit compare
QEN71_RS33735 -1.0 -1.3 SDR family oxidoreductase compare
QEN71_RS31305 -1.0 -3.8 amidohydrolase family protein compare
QEN71_RS23370 -1.0 -2.4 arginine/ornithine succinyltransferase subunit alpha compare
QEN71_RS07485 -1.0 -1.0 4-hydroxyphenylacetate 3-monooxygenase, reductase component compare
QEN71_RS26190 -1.0 -2.2 DUF883 family protein compare
QEN71_RS36475 -1.0 -3.8 ABC transporter substrate-binding protein compare
QEN71_RS26195 -1.0 -1.5 phage holin family protein compare
QEN71_RS37145 -1.0 -2.4 TetR family transcriptional regulator compare
QEN71_RS05615 -1.0 -1.1 oxidative damage protection protein compare
QEN71_RS03970 -1.0 -2.3 tetratricopeptide repeat protein compare
QEN71_RS09175 -1.0 -1.4 hypothetical protein compare
QEN71_RS42625 -1.0 -1.0 HypC/HybG/HupF family hydrogenase formation chaperone compare
QEN71_RS15820 -1.0 -4.9 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
QEN71_RS05655 -1.0 -1.0 rhodanese-like domain-containing protein compare
QEN71_RS06680 -1.0 -1.1 AlpA family phage regulatory protein compare
QEN71_RS42065 -1.0 -2.2 helix-turn-helix domain-containing protein compare
QEN71_RS24235 -1.0 -2.3 DUF3619 family protein compare
QEN71_RS01555 -1.0 -0.5 YciI family protein compare
QEN71_RS16400 -1.0 -5.9 adenosyl-hopene transferase HpnH compare
QEN71_RS42785 -1.0 -2.3 IS66 family insertion sequence element accessory protein TnpB compare
QEN71_RS34680 -0.9 -1.0 proline dehydrogenase family protein compare
QEN71_RS34435 -0.9 -1.2 LysR substrate-binding domain-containing protein compare
QEN71_RS28635 -0.9 -7.6 lytic transglycosylase domain-containing protein compare
QEN71_RS35975 -0.9 -2.4 GntR family transcriptional regulator compare
QEN71_RS39280 -0.9 -1.2 hypothetical protein compare
QEN71_RS20095 -0.9 -1.9 alpha/beta hydrolase compare
QEN71_RS04890 -0.9 -1.7 hypothetical protein compare
QEN71_RS24450 -0.9 -7.8 O-antigen ligase family protein compare
QEN71_RS41365 -0.9 -2.3 M20 aminoacylase family protein compare
QEN71_RS08310 -0.9 -1.7 serine hydroxymethyltransferase compare
QEN71_RS11810 -0.9 -1.7 LLM class flavin-dependent oxidoreductase compare
QEN71_RS31335 -0.9 -2.7 amidohydrolase family protein compare
QEN71_RS25570 -0.9 -4.0 glycosyltransferase compare
QEN71_RS10310 -0.9 -2.4 hypothetical protein compare
QEN71_RS29185 -0.9 -5.9 UvrD-helicase domain-containing protein compare
QEN71_RS37610 -0.9 -1.0 DUF2282 domain-containing protein compare
QEN71_RS15400 -0.9 -1.7 ABC transporter ATP-binding protein compare
QEN71_RS09015 -0.9 -2.1 DUF3597 domain-containing protein compare
QEN71_RS29450 -0.9 -3.6 SET domain-containing protein-lysine N-methyltransferase compare
QEN71_RS21730 -0.9 -1.5 low molecular weight phosphotyrosine protein phosphatase compare
QEN71_RS37035 -0.9 -1.5 ankyrin repeat domain-containing protein compare
QEN71_RS34445 -0.9 -1.7 SDR family oxidoreductase compare
QEN71_RS33320 -0.9 -1.5 VOC family protein compare
QEN71_RS03665 -0.9 -1.7 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
QEN71_RS29015 -0.9 -1.3 response regulator compare
QEN71_RS38070 -0.9 -0.9 type III secretion system export apparatus subunit SctT compare
QEN71_RS29445 -0.9 -6.8 sensor histidine kinase compare
QEN71_RS32935 -0.9 -1.1 type 1 glutamine amidotransferase domain-containing protein compare
QEN71_RS02475 -0.9 -7.2 response regulator compare
QEN71_RS04570 -0.9 -1.9 hypothetical protein compare
QEN71_RS26340 -0.9 -2.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Paraburkholderia sabiae LMG 24235 in supernatant experiments

For supernatant Filtered_supernatant_MT81_in_LB across organisms