Experiment set1S543 for Alteromonas macleodii MIT1002

Compare to:

Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 6

200 most important genes:

  gene name fitness t score description  
MIT1002_03785 -7.5 -5.2 Modulator of FtsH protease HflC compare
MIT1002_00113 -7.4 -5.1 Putative peroxiredoxin compare
MIT1002_02348 -7.3 -5.0 hypothetical protein compare
MIT1002_03690 -7.3 -5.0 DnaK suppressor protein compare
MIT1002_03908 -7.3 -5.0 NAD(P) transhydrogenase subunit alpha compare
MIT1002_00471 -7.1 -4.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
MIT1002_02429 -7.1 -4.9 Glucose-resistance amylase regulator compare
MIT1002_01027 -7.1 -4.9 Phosphoribosylformylglycinamidine synthase compare
MIT1002_02524 -7.1 -4.9 Amidophosphoribosyltransferase compare
MIT1002_00948 -7.1 -4.9 3-isopropylmalate dehydrogenase compare
MIT1002_00504 -7.1 -4.9 Acetolactate synthase isozyme 3 small subunit compare
MIT1002_02636 -7.0 -4.8 Imidazole glycerol phosphate synthase subunit HisH compare
MIT1002_02833 -7.0 -4.8 Malate synthase G compare
MIT1002_04045 -7.0 -4.8 Ketol-acid reductoisomerase compare
MIT1002_01263 -7.0 -4.8 7-cyano-7-deazaguanine synthase compare
MIT1002_01763 -7.0 -3.2 Putative pterin-4-alpha-carbinolamine dehydratase compare
MIT1002_00949 -6.9 -4.8 2-isopropylmalate synthase compare
MIT1002_03909 -6.9 -4.8 NAD(P) transhydrogenase subunit alpha part 1 compare
MIT1002_00946 -6.8 -4.7 3-isopropylmalate dehydratase small subunit 1 compare
MIT1002_03516 -6.8 -4.7 Acetyl-coenzyme A synthetase compare
MIT1002_00469 -6.8 -4.7 Ornithine carbamoyltransferase compare
MIT1002_00189 -6.8 -4.7 Galactokinase compare
MIT1002_03139 -6.8 -4.7 Glutamate synthase [NADPH] large chain precursor compare
MIT1002_02219 -6.8 -4.7 Phosphoribosylformylglycinamidine cyclo-ligase compare
MIT1002_02220 -6.8 -4.7 Phosphoribosylglycinamide formyltransferase compare
MIT1002_01112 -6.8 -4.7 Homoserine O-succinyltransferase compare
MIT1002_03179 -6.7 -4.6 Cystathionine beta-lyase PatB compare
MIT1002_01122 -6.7 -4.6 Bicarbonate transporter BicA compare
MIT1002_00826 -6.7 -3.6 Ribosome hibernation promoting factor compare
MIT1002_02831 -6.7 -4.6 Isocitrate lyase compare
MIT1002_02012 -6.6 -4.6 Pyruvate dehydrogenase E1 component subunit alpha compare
MIT1002_00377 -6.6 -4.6 Branched-chain-amino-acid aminotransferase 2 compare
MIT1002_00522 -6.6 -4.6 N5-carboxyaminoimidazole ribonucleotide synthase compare
MIT1002_02349 -6.6 -4.6 2-hydroxypropyl-CoM lyase compare
MIT1002_01035 -6.6 -4.5 anti-sigma28 factor FlgM compare
MIT1002_04040 -6.6 -4.5 L-threonine dehydratase biosynthetic IlvA compare
MIT1002_01119 -6.6 -4.5 HTH-type transcriptional regulator GltC compare
MIT1002_03786 -6.6 -9.0 Modulator of FtsH protease HflK compare
MIT1002_03961 -6.6 -4.5 Phosphoribosylamine--glycine ligase compare
MIT1002_03907 -6.5 -6.3 NAD(P) transhydrogenase subunit beta compare
MIT1002_03086 -6.5 -4.5 Aspartokinase I/homoserine dehydrogenase I compare
MIT1002_02638 -6.5 -4.5 Imidazole glycerol phosphate synthase subunit HisF compare
MIT1002_02639 -6.5 -4.5 Phosphoribosyl-ATP pyrophosphatase compare
MIT1002_00947 -6.5 -4.5 3-isopropylmalate dehydratase large subunit compare
MIT1002_01266 -6.4 -4.5 Asparagine synthetase B [glutamine-hydrolyzing] compare
MIT1002_00467 -6.4 -4.4 Argininosuccinate lyase compare
MIT1002_02266 -6.4 -4.4 Methionine gamma-lyase compare
MIT1002_02993 -6.4 -4.4 D-3-phosphoglycerate dehydrogenase compare
MIT1002_02811 -6.4 -4.4 preprotein translocase subunit SecD compare
MIT1002_02702 -6.3 -4.4 Serine hydroxymethyltransferase compare
MIT1002_02634 -6.3 -4.4 Histidinol-phosphate aminotransferase compare
MIT1002_02633 -6.3 -4.4 Histidinol dehydrogenase compare
MIT1002_04044 -6.3 -4.4 HTH-type transcriptional regulator GltC compare
MIT1002_00424 -6.3 -4.4 Solvent efflux pump srpABC operon corepressor compare
MIT1002_00809 -6.3 -4.4 Sensor protein QseC compare
MIT1002_02971 -6.3 -4.4 Glycine dehydrogenase [decarboxylating] compare
MIT1002_02635 -6.3 -4.3 Histidine biosynthesis bifunctional protein HisB compare
MIT1002_00485 -6.3 -4.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
MIT1002_00466 -6.3 -4.3 Amino-acid acetyltransferase compare
MIT1002_02013 -6.3 -4.3 2-oxoisovalerate dehydrogenase subunit beta compare
MIT1002_02810 -6.3 -4.3 preprotein translocase subunit SecF compare
MIT1002_00439 -6.3 -6.1 Para-aminobenzoate synthase glutamine amidotransferase component II compare
MIT1002_03321 -6.3 -4.3 Aldehyde dehydrogenase B compare
MIT1002_00068 -6.3 -4.3 Chorismate--pyruvate lyase compare
MIT1002_00188 -6.3 -4.3 Galactose-1-phosphate uridylyltransferase compare
MIT1002_03140 -6.3 -4.3 Glutamate synthase [NADPH] small chain compare
MIT1002_02008 -6.2 -10.4 Para-aminobenzoate synthase component 1 compare
MIT1002_00138 -6.2 -4.3 Histone deacetylase-like amidohydrolase compare
MIT1002_02014 -6.2 -4.3 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex compare
MIT1002_01979 -6.2 -4.3 Carnitinyl-CoA dehydratase compare
MIT1002_03698 -6.2 -4.3 tRNA (guanine-N(7)-)-methyltransferase compare
MIT1002_03539 -6.2 -2.9 Bifunctional protein BirA compare
MIT1002_02708 -6.2 -4.3 Phosphoserine phosphatase compare
MIT1002_02681 -6.2 -7.3 Transcriptional activator ChrR compare
MIT1002_04041 -6.2 -4.3 Dihydroxy-acid dehydratase compare
MIT1002_00109 -6.1 -7.3 Putative reactive intermediate deaminase TdcF compare
MIT1002_04056 -6.1 -4.2 Glutamate 5-kinase compare
MIT1002_00436 -6.1 -4.2 Arginine N-succinyltransferase subunit beta compare
MIT1002_01466 -6.1 -4.2 Carbamoyl-phosphate synthase small chain compare
MIT1002_00351 -6.1 -13.6 Degradation activator compare
MIT1002_02287 -6.1 -7.2 Electron transfer flavoprotein small subunit compare
MIT1002_03096 -6.1 -4.2 Isocitrate dehydrogenase kinase/phosphatase compare
MIT1002_01736 -6.1 -4.2 Aminodeoxychorismate lyase compare
MIT1002_03885 -6.1 -4.2 NADH dehydrogenase compare
MIT1002_02973 -6.1 -4.2 Aminomethyltransferase compare
MIT1002_01467 -6.0 -4.2 Carbamoyl-phosphate synthase large chain compare
MIT1002_02306 -6.0 -4.2 Glutamate-pyruvate aminotransferase AlaA compare
MIT1002_03084 -6.0 -4.2 Threonine synthase compare
MIT1002_01885 -6.0 -4.1 Gamma-glutamyl phosphate reductase compare
MIT1002_00843 -6.0 -4.1 hypothetical protein compare
MIT1002_00503 -6.0 -4.1 Acetolactate synthase isozyme 3 large subunit compare
MIT1002_02286 -6.0 -4.1 Electron transfer flavoprotein large subunit compare
MIT1002_01984 -6.0 -4.1 queuosine biosynthesis protein QueD compare
MIT1002_03015 -5.9 -7.1 aspartoacylase compare
MIT1002_02637 -5.9 -4.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MIT1002_03323 -5.9 -5.7 Sensor histidine kinase LiaS compare
MIT1002_02394 -5.9 -4.1 Glyceraldehyde-3-phosphate dehydrogenase compare
MIT1002_03130 -5.9 -4.1 2-methylcitrate synthase compare
MIT1002_00160 -5.9 -4.1 Diaminopimelate decarboxylase compare
MIT1002_02972 -5.9 -4.1 Glycine cleavage system H protein compare
MIT1002_03062 -5.8 -4.0 Pyrroline-5-carboxylate reductase compare
MIT1002_02757 -5.8 -8.9 Lon protease compare
MIT1002_01429 -5.8 -4.0 Anthranilate synthase component II compare
MIT1002_02400 -5.8 -5.7 4-alpha-glucanotransferase compare
MIT1002_01264 -5.8 -4.0 7-carboxy-7-deazaguanine synthase compare
MIT1002_00468 -5.8 -8.9 Argininosuccinate synthase compare
MIT1002_01428 -5.8 -4.0 Anthranilate synthase component II compare
MIT1002_00437 -5.7 -3.9 Succinylornithine transaminase/acetylornithine aminotransferase compare
MIT1002_03085 -5.7 -3.9 Homoserine kinase compare
MIT1002_04134 -5.6 -3.9 Sporulation initiation inhibitor protein soj compare
MIT1002_02404 -5.6 -3.9 Glucokinase compare
MIT1002_01001 -5.6 -3.9 PII uridylyl-transferase compare
MIT1002_03317 -5.6 -3.8 Transcriptional regulatory protein DevR (DosR) compare
MIT1002_02832 -5.6 -3.8 Nodulation protein D 2 compare
MIT1002_00988 -5.5 -3.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
MIT1002_00108 -5.5 -3.8 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MIT1002_00876 -5.5 -3.8 Phosphate import ATP-binding protein PstB 3 compare
MIT1002_01295 -5.5 -3.8 Inner membrane protein YpjD compare
MIT1002_00970 -5.4 -3.8 UDP-glucose 4-epimerase compare
MIT1002_02041 -5.4 -2.5 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase compare
MIT1002_01316 -5.4 -3.7 P-protein compare
MIT1002_03331 -5.3 -7.3 D-lactate dehydrogenase compare
MIT1002_01430 -5.3 -3.7 Anthranilate synthase component 1 compare
MIT1002_01544 -5.3 -3.7 D-alanyl-D-alanine carboxypeptidase compare
MIT1002_00625 -5.3 -13.0 RNA polymerase sigma factor RpoS compare
MIT1002_00470 -5.2 -9.8 Acetylglutamate kinase compare
MIT1002_03913 -5.2 -15.7 hypothetical protein compare
MIT1002_01129 -5.2 -3.1 Carbon storage regulator compare
MIT1002_03116 -5.1 -3.6 Spore coat protein SA compare
MIT1002_02632 -5.1 -3.6 ATP phosphoribosyltransferase compare
MIT1002_01815 -5.1 -6.1 Phosphoenolpyruvate synthase regulatory protein compare
MIT1002_01809 -5.1 -8.6 Organic hydroperoxide resistance transcriptional regulator compare
MIT1002_02288 -5.1 -32.8 Electron transfer flavoprotein-ubiquinone oxidoreductase compare
MIT1002_03628 -5.1 -3.4 Cold shock-like protein CspG compare
MIT1002_01832 -5.1 -2.7 Cold shock-like protein CspD compare
MIT1002_01192 -5.1 -5.0 Peptide chain release factor 3 compare
MIT1002_01830 -5.1 -3.5 Isocitrate dehydrogenase [NADP] 2 compare
MIT1002_00844 -5.0 -3.5 AFG1-like ATPase compare
MIT1002_02991 -5.0 -3.5 putative 5-formyltetrahydrofolate cyclo-ligase compare
MIT1002_00753 -5.0 -4.8 Phosphate-binding protein PstS 1 precursor compare
MIT1002_00076 -5.0 -3.2 transcriptional regulator, y4mF family compare
MIT1002_01292 -4.9 -5.9 Phosphohistidine phosphatase SixA compare
MIT1002_03186 -4.9 -5.9 Nitrogen regulation protein NR(I) compare
MIT1002_02683 -4.9 -6.3 hypothetical protein compare
MIT1002_03616 -4.9 -3.4 NAD(P)H-flavin reductase compare
MIT1002_00874 -4.9 -8.1 Phosphate transport system permease protein PstC compare
MIT1002_03185 -4.9 -10.9 Nitrogen regulation protein NR(II) compare
MIT1002_01378 -4.9 -13.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
MIT1002_02760 -4.8 -3.3 ATP-dependent Clp protease proteolytic subunit precursor compare
MIT1002_02441 -4.8 -4.7 Helix-turn-helix domain protein compare
MIT1002_00423 -4.8 -3.3 Aspartate carbamoyltransferase catalytic chain compare
MIT1002_00877 -4.8 -3.3 Repressor protein PhoU compare
MIT1002_02568 -4.8 -4.4 Tetracycline repressor protein class A from transposon 1721 compare
MIT1002_00521 -4.7 -3.3 N5-carboxyaminoimidazole ribonucleotide mutase compare
MIT1002_01427 -4.7 -3.1 Tryptophan biosynthesis protein TrpCF compare
MIT1002_03162 -4.7 -2.2 Iron-sulfur cluster insertion protein ErpA compare
MIT1002_01352 -4.7 -13.9 Aspartate-semialdehyde dehydrogenase compare
MIT1002_02879 -4.7 -14.7 Glutamate-ammonia-ligase adenylyltransferase compare
MIT1002_04092 -4.7 -3.2 putative type I restriction enzymeP M protein compare
MIT1002_00827 -4.6 -3.0 RNA polymerase sigma-54 factor 2 compare
MIT1002_00066 -4.6 -6.3 Rhomboid protease GlpG compare
MIT1002_02184 -4.6 -2.5 Orotidine 5'-phosphate decarboxylase compare
MIT1002_02759 -4.6 -3.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MIT1002_02035 -4.6 -2.1 Dihydroorotate dehydrogenase (quinone) compare
MIT1002_04036 -4.5 -2.6 LexA repressor compare
MIT1002_04135 -4.5 -3.1 ParB/RepB/Spo0J family partition protein compare
MIT1002_01981 -4.5 -10.4 Inner membrane protein YejM compare
MIT1002_02812 -4.4 -3.0 preprotein translocase subunit YajC compare
MIT1002_02211 -4.4 -11.0 TPR repeat-containing protein YfgC precursor compare
MIT1002_01515 -4.4 -3.0 Release factor glutamine methyltransferase compare
MIT1002_03806 -4.4 -3.0 hypothetical protein compare
MIT1002_01380 -4.4 -14.1 8-amino-7-oxononanoate synthase compare
MIT1002_03965 -4.4 -14.0 Phosphoribulokinase, plasmid compare
MIT1002_01121 -4.4 -6.0 Carbonic anhydrase 1 compare
MIT1002_02130 -4.4 -2.4 cbb3-type cytochrome c oxidase subunit II compare
MIT1002_02573 -4.4 -7.3 hypothetical protein compare
MIT1002_00825 -4.4 -6.2 Nitrogen regulatory protein compare
MIT1002_03581 -4.4 -3.0 Mannose-1-phosphate guanylyltransferase 1 compare
MIT1002_02128 -4.4 -3.0 hypothetical protein compare
MIT1002_02715 -4.3 -3.0 Elongation factor 4 compare
MIT1002_03481 -4.3 -2.9 hypothetical protein compare
MIT1002_04131 -4.3 -3.8 Putative membrane protein insertion efficiency factor compare
MIT1002_01102 -4.3 -6.6 Flagellum site-determining protein YlxH compare
MIT1002_01132 -4.3 -1.2 tRNA-Arg compare
MIT1002_00833 -4.3 -5.9 Inner membrane protein YrbG compare
MIT1002_02025 -4.3 -4.2 Tail-specific protease precursor compare
MIT1002_03322 -4.3 -6.4 Transcriptional activator protein ExaE compare
MIT1002_01777 -4.3 -5.0 chromosome segregation protein SMC compare
MIT1002_01345 -4.3 -2.3 tRNA-Ser compare
MIT1002_01834 -4.3 -15.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
MIT1002_00074 -4.2 -2.8 tRNA-Arg compare
MIT1002_03488 -4.2 -2.9 Na(+)-translocating NADH-quinone reductase subunit A compare
MIT1002_01398 -4.2 -1.1 tRNA-Val compare
MIT1002_00486 -4.2 -1.1 Protein-export protein SecB compare
MIT1002_00094 -4.2 -1.1 sulfur carrier protein ThiS compare
MIT1002_03109 -4.2 -5.0 Saccharopine dehydrogenase compare
MIT1002_00235 -4.2 -2.7 Glycogen synthase compare
MIT1002_00647 -4.1 -5.1 RNA pyrophosphohydrolase compare
MIT1002_04103 -4.1 -12.5 Galactose operon repressor compare
MIT1002_00884 -4.1 -2.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Alteromonas macleodii MIT1002 in mixed community experiments

For mixed community Mixed culture; Prochlorococcus marinus str. MIT9313 10:1 starting OD to HP15 across organisms