Experiment set1S541 for Alteromonas macleodii MIT1002

Compare to:

Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

200 most important genes:

  gene name fitness t score description  
MIT1002_00351 -7.1 -4.9 Degradation activator compare
MIT1002_03785 -6.8 -6.7 Modulator of FtsH protease HflC compare
MIT1002_02348 -6.8 -4.7 hypothetical protein compare
MIT1002_03690 -6.8 -4.7 DnaK suppressor protein compare
MIT1002_03908 -6.8 -4.4 NAD(P) transhydrogenase subunit alpha compare
MIT1002_03786 -6.7 -4.6 Modulator of FtsH protease HflK compare
MIT1002_00471 -6.7 -4.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
MIT1002_00948 -6.6 -4.6 3-isopropylmalate dehydrogenase compare
MIT1002_01027 -6.6 -4.6 Phosphoribosylformylglycinamidine synthase compare
MIT1002_02524 -6.6 -4.6 Amidophosphoribosyltransferase compare
MIT1002_00504 -6.6 -4.2 Acetolactate synthase isozyme 3 small subunit compare
MIT1002_00949 -6.5 -4.5 2-isopropylmalate synthase compare
MIT1002_01263 -6.5 -4.1 7-cyano-7-deazaguanine synthase compare
MIT1002_01763 -6.5 -2.6 Putative pterin-4-alpha-carbinolamine dehydratase compare
MIT1002_02636 -6.5 -4.5 Imidazole glycerol phosphate synthase subunit HisH compare
MIT1002_02833 -6.5 -4.5 Malate synthase G compare
MIT1002_04045 -6.4 -4.5 Ketol-acid reductoisomerase compare
MIT1002_02429 -6.4 -7.6 Glucose-resistance amylase regulator compare
MIT1002_00946 -6.4 -4.4 3-isopropylmalate dehydratase small subunit 1 compare
MIT1002_03139 -6.3 -4.4 Glutamate synthase [NADPH] large chain precursor compare
MIT1002_00189 -6.3 -4.4 Galactokinase compare
MIT1002_03516 -6.3 -4.4 Acetyl-coenzyme A synthetase compare
MIT1002_00469 -6.3 -4.4 Ornithine carbamoyltransferase compare
MIT1002_01112 -6.3 -4.3 Homoserine O-succinyltransferase compare
MIT1002_03179 -6.3 -4.3 Cystathionine beta-lyase PatB compare
MIT1002_02219 -6.3 -4.3 Phosphoribosylformylglycinamidine cyclo-ligase compare
MIT1002_02220 -6.3 -4.3 Phosphoribosylglycinamide formyltransferase compare
MIT1002_00826 -6.2 -2.9 Ribosome hibernation promoting factor compare
MIT1002_00377 -6.2 -4.3 Branched-chain-amino-acid aminotransferase 2 compare
MIT1002_02831 -6.2 -4.3 Isocitrate lyase compare
MIT1002_03907 -6.2 -4.3 NAD(P) transhydrogenase subunit beta compare
MIT1002_01119 -6.1 -4.2 HTH-type transcriptional regulator GltC compare
MIT1002_00522 -6.1 -4.2 N5-carboxyaminoimidazole ribonucleotide synthase compare
MIT1002_02349 -6.1 -4.2 2-hydroxypropyl-CoM lyase compare
MIT1002_01035 -6.1 -4.1 anti-sigma28 factor FlgM compare
MIT1002_03086 -6.1 -4.2 Aspartokinase I/homoserine dehydrogenase I compare
MIT1002_04040 -6.1 -4.2 L-threonine dehydratase biosynthetic IlvA compare
MIT1002_03961 -6.1 -4.2 Phosphoribosylamine--glycine ligase compare
MIT1002_03015 -6.0 -4.2 aspartoacylase compare
MIT1002_00947 -6.0 -4.2 3-isopropylmalate dehydratase large subunit compare
MIT1002_02638 -6.0 -4.1 Imidazole glycerol phosphate synthase subunit HisF compare
MIT1002_01266 -6.0 -4.1 Asparagine synthetase B [glutamine-hydrolyzing] compare
MIT1002_02639 -5.9 -4.1 Phosphoribosyl-ATP pyrophosphatase compare
MIT1002_00467 -5.9 -4.1 Argininosuccinate lyase compare
MIT1002_02568 -5.9 -3.5 Tetracycline repressor protein class A from transposon 1721 compare
MIT1002_02266 -5.9 -4.1 Methionine gamma-lyase compare
MIT1002_02993 -5.9 -4.1 D-3-phosphoglycerate dehydrogenase compare
MIT1002_03321 -5.8 -4.0 Aldehyde dehydrogenase B compare
MIT1002_00468 -5.8 -4.0 Argininosuccinate synthase compare
MIT1002_00424 -5.8 -4.0 Solvent efflux pump srpABC operon corepressor compare
MIT1002_03140 -5.8 -4.0 Glutamate synthase [NADPH] small chain compare
MIT1002_02811 -5.8 -4.0 preprotein translocase subunit SecD compare
MIT1002_02634 -5.8 -4.0 Histidinol-phosphate aminotransferase compare
MIT1002_02702 -5.8 -4.0 Serine hydroxymethyltransferase compare
MIT1002_00466 -5.8 -4.0 Amino-acid acetyltransferase compare
MIT1002_02971 -5.8 -4.0 Glycine dehydrogenase [decarboxylating] compare
MIT1002_02008 -5.8 -8.9 Para-aminobenzoate synthase component 1 compare
MIT1002_04044 -5.8 -4.0 HTH-type transcriptional regulator GltC compare
MIT1002_00485 -5.8 -4.0 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
MIT1002_02633 -5.8 -4.0 Histidinol dehydrogenase compare
MIT1002_00188 -5.8 -4.0 Galactose-1-phosphate uridylyltransferase compare
MIT1002_00809 -5.8 -4.0 Sensor protein QseC compare
MIT1002_02013 -5.8 -4.0 2-oxoisovalerate dehydrogenase subunit beta compare
MIT1002_00068 -5.8 -4.0 Chorismate--pyruvate lyase compare
MIT1002_03909 -5.8 -6.9 NAD(P) transhydrogenase subunit alpha part 1 compare
MIT1002_02635 -5.8 -4.0 Histidine biosynthesis bifunctional protein HisB compare
MIT1002_00138 -5.8 -4.0 Histone deacetylase-like amidohydrolase compare
MIT1002_02810 -5.7 -4.0 preprotein translocase subunit SecF compare
MIT1002_01979 -5.7 -4.0 Carnitinyl-CoA dehydratase compare
MIT1002_03698 -5.7 -3.9 tRNA (guanine-N(7)-)-methyltransferase compare
MIT1002_03539 -5.7 -2.4 Bifunctional protein BirA compare
MIT1002_03096 -5.7 -3.9 Isocitrate dehydrogenase kinase/phosphatase compare
MIT1002_01466 -5.6 -3.9 Carbamoyl-phosphate synthase small chain compare
MIT1002_02757 -5.6 -5.5 Lon protease compare
MIT1002_03323 -5.6 -3.9 Sensor histidine kinase LiaS compare
MIT1002_00439 -5.6 -5.5 Para-aminobenzoate synthase glutamine amidotransferase component II compare
MIT1002_04041 -5.6 -3.9 Dihydroxy-acid dehydratase compare
MIT1002_02681 -5.6 -6.7 Transcriptional activator ChrR compare
MIT1002_00436 -5.6 -3.8 Arginine N-succinyltransferase subunit beta compare
MIT1002_04056 -5.6 -3.9 Glutamate 5-kinase compare
MIT1002_02708 -5.6 -3.9 Phosphoserine phosphatase compare
MIT1002_01467 -5.6 -3.9 Carbamoyl-phosphate synthase large chain compare
MIT1002_01736 -5.6 -3.9 Aminodeoxychorismate lyase compare
MIT1002_03885 -5.6 -3.8 NADH dehydrogenase compare
MIT1002_03084 -5.6 -3.8 Threonine synthase compare
MIT1002_01420 -5.6 -5.4 Virulence sensor histidine kinase PhoQ compare
MIT1002_02973 -5.6 -3.8 Aminomethyltransferase compare
MIT1002_00932 -5.5 -2.3 holin-like protein compare
MIT1002_02306 -5.5 -3.8 Glutamate-pyruvate aminotransferase AlaA compare
MIT1002_00843 -5.5 -3.8 hypothetical protein compare
MIT1002_01984 -5.5 -3.8 queuosine biosynthesis protein QueD compare
MIT1002_00503 -5.5 -3.8 Acetolactate synthase isozyme 3 large subunit compare
MIT1002_01885 -5.5 -3.8 Gamma-glutamyl phosphate reductase compare
MIT1002_03130 -5.4 -3.8 2-methylcitrate synthase compare
MIT1002_02400 -5.4 -3.8 4-alpha-glucanotransferase compare
MIT1002_03062 -5.4 -3.7 Pyrroline-5-carboxylate reductase compare
MIT1002_02394 -5.4 -3.7 Glyceraldehyde-3-phosphate dehydrogenase compare
MIT1002_00160 -5.4 -3.7 Diaminopimelate decarboxylase compare
MIT1002_02972 -5.4 -3.7 Glycine cleavage system H protein compare
MIT1002_00825 -5.4 -3.7 Nitrogen regulatory protein compare
MIT1002_02637 -5.4 -3.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MIT1002_01429 -5.3 -3.7 Anthranilate synthase component II compare
MIT1002_00161 -5.3 -3.1 putative small periplasmic lipoprotein compare
MIT1002_01428 -5.3 -3.7 Anthranilate synthase component II compare
MIT1002_01264 -5.3 -3.7 7-carboxy-7-deazaguanine synthase compare
MIT1002_03331 -5.3 -5.2 D-lactate dehydrogenase compare
MIT1002_00113 -5.3 -7.3 Putative peroxiredoxin compare
MIT1002_02815 -5.2 -2.5 hypothetical protein compare
MIT1002_03085 -5.2 -3.6 Homoserine kinase compare
MIT1002_00437 -5.2 -3.6 Succinylornithine transaminase/acetylornithine aminotransferase compare
MIT1002_02404 -5.1 -3.5 Glucokinase compare
MIT1002_00872 -5.1 -6.1 Polyphosphate kinase compare
MIT1002_00100 -5.1 -7.0 Putative uroporphyrinogen-III C-methyltransferase compare
MIT1002_02288 -5.1 -28.4 Electron transfer flavoprotein-ubiquinone oxidoreductase compare
MIT1002_02012 -5.1 -11.3 Pyruvate dehydrogenase E1 component subunit alpha compare
MIT1002_02832 -5.0 -3.5 Nodulation protein D 2 compare
MIT1002_00988 -5.0 -3.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
MIT1002_01777 -5.0 -3.5 chromosome segregation protein SMC compare
MIT1002_00970 -5.0 -3.4 UDP-glucose 4-epimerase compare
MIT1002_02441 -5.0 -3.4 Helix-turn-helix domain protein compare
MIT1002_01553 -5.0 -11.5 4-hydroxyphenylpyruvate dioxygenase compare
MIT1002_03913 -5.0 -12.0 hypothetical protein compare
MIT1002_01192 -5.0 -3.4 Peptide chain release factor 3 compare
MIT1002_01295 -4.9 -3.4 Inner membrane protein YpjD compare
MIT1002_02718 -4.9 -2.6 Sigma-E factor negative regulatory protein compare
MIT1002_04134 -4.9 -7.5 Sporulation initiation inhibitor protein soj compare
MIT1002_00470 -4.9 -8.9 Acetylglutamate kinase compare
MIT1002_03965 -4.9 -14.1 Phosphoribulokinase, plasmid compare
MIT1002_04103 -4.9 -8.8 Galactose operon repressor compare
MIT1002_03670 -4.9 -6.7 5,10-methylenetetrahydrofolate reductase compare
MIT1002_02286 -4.9 -7.4 Electron transfer flavoprotein large subunit compare
MIT1002_01316 -4.9 -3.4 P-protein compare
MIT1002_01981 -4.8 -6.6 Inner membrane protein YejM compare
MIT1002_01544 -4.8 -3.4 D-alanyl-D-alanine carboxypeptidase compare
MIT1002_01430 -4.8 -3.3 Anthranilate synthase component 1 compare
MIT1002_03089 -4.8 -10.3 S-(hydroxymethyl)glutathione dehydrogenase compare
MIT1002_03828 -4.8 -11.5 Taurine catabolism dioxygenase TauD, TfdA family compare
MIT1002_02287 -4.7 -7.4 Electron transfer flavoprotein small subunit compare
MIT1002_01129 -4.7 -2.5 Carbon storage regulator compare
MIT1002_01001 -4.6 -6.3 PII uridylyl-transferase compare
MIT1002_02632 -4.6 -3.2 ATP phosphoribosyltransferase compare
MIT1002_01832 -4.6 -2.2 Cold shock-like protein CspD compare
MIT1002_03185 -4.6 -9.8 Nitrogen regulation protein NR(II) compare
MIT1002_03109 -4.6 -3.2 Saccharopine dehydrogenase compare
MIT1002_02991 -4.6 -3.1 putative 5-formyltetrahydrofolate cyclo-ligase compare
MIT1002_00070 -4.5 -1.1 Membrane fusogenic activity compare
MIT1002_00844 -4.5 -3.1 AFG1-like ATPase compare
MIT1002_00076 -4.5 -2.6 transcriptional regulator, y4mF family compare
MIT1002_01248 -4.5 -2.5 Cold shock-like protein CspG compare
MIT1002_03507 -4.4 -13.1 Acetate transporter ActP compare
MIT1002_00514 -4.4 -6.1 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase compare
MIT1002_03616 -4.4 -3.0 NAD(P)H-flavin reductase compare
MIT1002_00833 -4.4 -3.0 Inner membrane protein YrbG compare
MIT1002_00108 -4.3 -5.9 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MIT1002_03622 -4.3 -10.1 Cytochrome d ubiquinol oxidase subunit 2 compare
MIT1002_00423 -4.3 -3.0 Aspartate carbamoyltransferase catalytic chain compare
MIT1002_02014 -4.3 -12.1 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex compare
MIT1002_02760 -4.3 -3.0 ATP-dependent Clp protease proteolytic subunit precursor compare
MIT1002_00033 -4.3 -1.0 23S ribosomal RNA compare
MIT1002_03843 -4.3 -5.9 Galactose operon repressor compare
MIT1002_00109 -4.3 -10.2 Putative reactive intermediate deaminase TdcF compare
MIT1002_02543 -4.3 -1.5 hypothetical protein compare
MIT1002_01427 -4.2 -2.5 Tryptophan biosynthesis protein TrpCF compare
MIT1002_01122 -4.2 -10.5 Bicarbonate transporter BicA compare
MIT1002_00521 -4.2 -2.9 N5-carboxyaminoimidazole ribonucleotide mutase compare
MIT1002_00888 -4.2 -4.5 Organic hydroperoxide resistance transcriptional regulator compare
MIT1002_02391 -4.2 -1.0 putative membrane protein compare
MIT1002_03508 -4.2 -3.5 putative solute:sodium symporter small subunit compare
MIT1002_01995 -4.2 -10.1 putative rhodanese-related sulfurtransferase compare
MIT1002_01102 -4.2 -5.7 Flagellum site-determining protein YlxH compare
MIT1002_04092 -4.1 -2.9 putative type I restriction enzymeP M protein compare
MIT1002_00827 -4.1 -2.4 RNA polymerase sigma-54 factor 2 compare
MIT1002_02035 -4.1 -1.7 Dihydroorotate dehydrogenase (quinone) compare
MIT1002_01834 -4.1 -11.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
MIT1002_02573 -4.1 -4.9 hypothetical protein compare
MIT1002_03116 -4.1 -6.8 Spore coat protein SA compare
MIT1002_02184 -4.1 -2.0 Orotidine 5'-phosphate decarboxylase compare
MIT1002_00875 -4.1 -9.9 Phosphate transport system permease protein PstA compare
MIT1002_00627 -4.1 -1.9 Inner membrane protein YqaA compare
MIT1002_02759 -4.1 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MIT1002_04135 -4.0 -2.8 ParB/RepB/Spo0J family partition protein compare
MIT1002_03669 -4.0 -4.1 Met regulon regulatory protein MetJ compare
MIT1002_00486 -4.0 -1.0 Protein-export protein SecB compare
MIT1002_04036 -4.0 -2.1 LexA repressor compare
MIT1002_00094 -4.0 -1.0 sulfur carrier protein ThiS compare
MIT1002_00353 -4.0 -8.7 Cytoplasmic trehalase compare
MIT1002_00877 -4.0 -5.5 Repressor protein PhoU compare
MIT1002_01816 -4.0 -15.7 Phosphoenolpyruvate synthase compare
MIT1002_04233 -4.0 -2.1 hypothetical protein compare
MIT1002_02347 -3.9 -2.2 hypothetical protein compare
MIT1002_01515 -3.9 -2.7 Release factor glutamine methyltransferase compare
MIT1002_02812 -3.9 -2.4 preprotein translocase subunit YajC compare
MIT1002_02130 -3.9 -1.9 cbb3-type cytochrome c oxidase subunit II compare
MIT1002_02929 -3.9 -1.6 Lactoylglutathione lyase compare
MIT1002_02128 -3.9 -2.4 hypothetical protein compare
MIT1002_03186 -3.9 -7.1 Nitrogen regulation protein NR(I) compare
MIT1002_01131 -3.9 -0.9 tRNA-Arg compare
MIT1002_02653 -3.9 -1.3 Nucleoid-associated protein YbaB compare
MIT1002_03481 -3.8 -2.2 hypothetical protein compare
MIT1002_03033 -3.8 -3.2 Ribosomal RNA small subunit methyltransferase H compare


Specific Phenotypes

For 5 genes in this experiment

For mixed community Mixed culture; Prochlorococcus marinus str. MIT9313 10:1 starting OD to HP15 in Alteromonas macleodii MIT1002

For mixed community Mixed culture; Prochlorococcus marinus str. MIT9313 10:1 starting OD to HP15 across organisms