Experiment set1S54 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
MPMX19_03906 -4.6 -14.9 Pca regulon regulatory protein compare
MPMX19_01495 -4.3 -4.1 hypothetical protein compare
MPMX19_05680 -3.4 -3.3 Cell cycle response regulator CtrA compare
MPMX19_06547 -2.6 -7.7 hypothetical protein compare
MPMX19_01053 -2.6 -5.4 Dihydroorotase compare
MPMX19_03734 -2.5 -2.7 RutC family protein YjgH compare
MPMX19_01054 -2.4 -7.0 Aspartate carbamoyltransferase compare
MPMX19_01748 -2.4 -3.6 hypothetical protein compare
MPMX19_00530 -2.3 -4.4 Orotate phosphoribosyltransferase compare
MPMX19_02657 -2.3 -17.8 Glutamate synthase [NADPH] large chain compare
MPMX19_00262 -2.2 -2.5 Thiazole synthase compare
MPMX19_00858 -2.2 -6.6 Flagellar biosynthetic protein FliP compare
MPMX19_04000 -2.2 -5.2 Flagellar motor switch protein FliG compare
MPMX19_04093 -2.2 -4.7 hypothetical protein compare
MPMX19_02268 -2.2 -4.1 hypothetical protein compare
MPMX19_04112 -2.1 -5.1 hypothetical protein compare
MPMX19_04087 -2.1 -4.6 Flagellum site-determining protein YlxH compare
MPMX19_00126 -2.1 -4.1 hypothetical protein compare
MPMX19_04092 -2.1 -8.8 Flagellar motor switch protein FliN compare
MPMX19_05678 -2.0 -7.5 hypothetical protein compare
MPMX19_04114 -2.0 -4.6 hypothetical protein compare
MPMX19_02980 -2.0 -1.7 Hydrogen cyanide synthase subunit HcnA compare
MPMX19_00128 -2.0 -11.0 hypothetical protein compare
MPMX19_00714 -1.9 -7.1 Ferrous-iron efflux pump FieF compare
MPMX19_02937 -1.9 -2.5 hypothetical protein compare
MPMX19_02664 -1.9 -2.1 Arabinose 5-phosphate isomerase KdsD compare
MPMX19_05679 -1.9 -9.7 Flagellum-specific ATP synthase compare
MPMX19_04208 -1.8 -3.6 flagellum biosynthesis repressor protein FlbT compare
MPMX19_00705 -1.8 -3.7 Cell division coordinator CpoB compare
MPMX19_00867 -1.8 -12.4 Flagellar biosynthetic protein FlhB compare
MPMX19_01483 -1.8 -9.9 Flagellar basal-body rod protein FlgG compare
MPMX19_05065 -1.7 -3.0 Farnesyl diphosphate synthase compare
MPMX19_02618 -1.7 -2.9 Transcriptional regulatory protein BaeR compare
MPMX19_00680 -1.7 -3.1 Elongation factor P--(R)-beta-lysine ligase compare
MPMX19_00838 -1.7 -3.5 GTP pyrophosphokinase rsh compare
MPMX19_01497 -1.7 -4.7 hypothetical protein compare
MPMX19_02981 -1.7 -4.8 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_00866 -1.7 -7.7 Flagellar biosynthetic protein FliR compare
MPMX19_01484 -1.7 -6.2 Flagellar basal-body rod protein FlgG compare
MPMX19_02658 -1.7 -11.1 Glutamate synthase [NADPH] small chain compare
MPMX19_00862 -1.6 -8.4 hypothetical protein compare
MPMX19_06916 -1.6 -3.0 Crotonyl-CoA hydratase compare
MPMX19_00766 -1.6 -2.5 hypothetical protein compare
MPMX19_04094 -1.6 -9.3 Flagellar M-ring protein compare
MPMX19_04952 -1.6 -2.7 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_00304 -1.5 -3.4 Phosphatidylcholine synthase compare
MPMX19_00020 -1.5 -2.2 hypothetical protein compare
MPMX19_01560 -1.5 -3.2 3'-5' exonuclease DinG compare
MPMX19_05727 -1.5 -6.9 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_03976 -1.5 -4.7 hypothetical protein compare
MPMX19_00311 -1.4 -11.9 hypothetical protein compare
MPMX19_00863 -1.4 -6.9 Flagellar basal-body rod protein FlgC compare
MPMX19_01084 -1.4 -4.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX19_04222 -1.4 -10.7 hypothetical protein compare
MPMX19_06327 -1.4 -2.1 hypothetical protein compare
MPMX19_01729 -1.4 -2.2 Ethylmalonyl-CoA/methylmalonyl-CoA epimerase compare
MPMX19_02267 -1.4 -1.8 hypothetical protein compare
MPMX19_04835 -1.4 -3.0 hypothetical protein compare
MPMX19_04200 -1.3 -7.0 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase compare
MPMX19_06677 -1.3 -3.0 hypothetical protein compare
MPMX19_06644 -1.3 -10.4 GDP-mannose 4,6-dehydratase compare
MPMX19_01075 -1.2 -2.1 Molybdopterin synthase sulfur carrier subunit compare
MPMX19_06253 -1.2 -2.6 hypothetical protein compare
MPMX19_02543 -1.2 -2.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX19_03450 -1.2 -1.8 hypothetical protein compare
MPMX19_01630 -1.2 -3.4 Phosphoribosylamine--glycine ligase compare
MPMX19_01718 -1.2 -2.4 Ribosomal large subunit pseudouridine synthase C compare
MPMX19_00976 -1.2 -2.4 ATP-dependent RNA helicase RhlE compare
MPMX19_00854 -1.2 -10.0 hypothetical protein compare
MPMX19_05624 -1.2 -1.9 hypothetical protein compare
MPMX19_01304 -1.2 -6.7 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_04089 -1.2 -8.0 Flagellar biosynthesis protein FlhA compare
MPMX19_01014 -1.1 -4.1 Indole-3-glycerol phosphate synthase compare
MPMX19_00186 -1.1 -1.4 hypothetical protein compare
MPMX19_06546 -1.1 -2.6 hypothetical protein compare
MPMX19_02675 -1.1 -8.4 Phosphoenolpyruvate-dependent phosphotransferase system compare
MPMX19_00503 -1.1 -3.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
MPMX19_01883 -1.1 -5.6 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_01494 -1.1 -6.6 Flagellar P-ring protein compare
MPMX19_06734 -1.1 -8.8 Alginate biosynthesis protein AlgA compare
MPMX19_00906 -1.1 -7.6 Amidophosphoribosyltransferase compare
MPMX19_03722 -1.0 -2.0 hypothetical protein compare
MPMX19_05438 -1.0 -2.0 hypothetical protein compare
MPMX19_02951 -1.0 -2.0 Deoxyribose-phosphate aldolase 1 compare
MPMX19_01714 -1.0 -1.7 tRNA-modifying protein YgfZ compare
MPMX19_06090 -1.0 -2.0 Pyruvate dehydrogenase complex repressor compare
MPMX19_00794 -1.0 -2.6 Transcriptional activator protein CopR compare
MPMX19_05581 -1.0 -1.1 hypothetical protein compare
MPMX19_06577 -1.0 -6.3 hypothetical protein compare
MPMX19_04610 -1.0 -2.1 putative enoyl-CoA hydratase 1 compare
MPMX19_05989 -0.9 -2.6 HTH-type transcriptional regulator HdfR compare
MPMX19_04205 -0.9 -3.0 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_04199 -0.9 -5.1 Pseudaminic acid synthase compare
MPMX19_01704 -0.9 -1.9 hypothetical protein compare
MPMX19_06545 -0.9 -7.7 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
MPMX19_03367 -0.9 -2.6 Magnetosome membrane protein 22 compare
MPMX19_05023 -0.9 -0.9 hypothetical protein compare
MPMX19_01496 -0.9 -5.1 hypothetical protein compare
MPMX19_04258 -0.9 -3.2 hypothetical protein compare
MPMX19_03859 -0.9 -2.2 hypothetical protein compare
MPMX19_00904 -0.9 -5.3 DNA repair protein RadA compare
MPMX19_06723 -0.9 -3.0 hypothetical protein compare
MPMX19_02538 -0.9 -1.7 hypothetical protein compare
MPMX19_05224 -0.9 -2.4 hypothetical protein compare
MPMX19_05387 -0.9 -2.1 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
MPMX19_00694 -0.9 -2.0 2',3'-cyclic-nucleotide 2'-phosphodiesterase compare
MPMX19_04430 -0.9 -2.6 hypothetical protein compare
MPMX19_06353 -0.9 -1.1 hypothetical protein compare
MPMX19_00181 -0.9 -3.2 hypothetical protein compare
MPMX19_06887 -0.9 -2.4 Adenine deaminase compare
MPMX19_05834 -0.9 -1.2 Hydrogen peroxide-inducible genes activator compare
MPMX19_03738 -0.8 -3.0 hypothetical protein compare
MPMX19_04869 -0.8 -3.1 DNA polymerase I compare
MPMX19_03586 -0.8 -2.1 HTH-type transcriptional repressor ComR compare
MPMX19_03182 -0.8 -2.7 hypothetical protein compare
MPMX19_05361 -0.8 -4.0 CRP-like cAMP-activated global transcriptional regulator compare
MPMX19_01777 -0.8 -2.1 2-aminoadipate transaminase compare
MPMX19_05271 -0.8 -1.2 hypothetical protein compare
MPMX19_02745 -0.8 -1.9 putative nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
MPMX19_05119 -0.8 -5.5 Glucose-6-phosphate 1-dehydrogenase compare
MPMX19_05714 -0.8 -4.3 hypothetical protein compare
MPMX19_01487 -0.8 -1.9 hypothetical protein compare
MPMX19_02116 -0.8 -1.6 Cold shock protein CspA compare
MPMX19_05111 -0.8 -1.2 PqqA binding protein compare
MPMX19_04210 -0.8 -1.8 hypothetical protein compare
MPMX19_04206 -0.8 -3.0 3-oxoacyl-[acyl-carrier-protein] synthase 3 compare
MPMX19_02613 -0.8 -1.7 hypothetical protein compare
MPMX19_06544 -0.7 -5.7 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
MPMX19_05144 -0.7 -1.4 hypothetical protein compare
MPMX19_01822 -0.7 -3.7 2-isopropylmalate synthase compare
MPMX19_06315 -0.7 -1.2 ISL3 family transposase ISAli18 compare
MPMX19_00260 -0.7 -1.6 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_05906 -0.7 -0.9 hypothetical protein compare
MPMX19_04622 -0.7 -4.5 hypothetical protein compare
MPMX19_01485 -0.7 -4.8 hypothetical protein compare
MPMX19_00170 -0.7 -2.3 hypothetical protein compare
MPMX19_06914 -0.7 -1.1 Acyl-CoA dehydrogenase FadE27 compare
MPMX19_02298 -0.7 -1.6 hypothetical protein compare
MPMX19_04218 -0.7 -3.1 Protein phosphatase PrpC compare
MPMX19_04571 -0.7 -2.4 hypothetical protein compare
MPMX19_06954 -0.7 -2.0 hypothetical protein compare
MPMX19_00748 -0.7 -2.4 Organic hydroperoxide resistance transcriptional regulator compare
MPMX19_01481 -0.7 -4.7 Flagellar motor switch protein FliM compare
MPMX19_05658 -0.7 -2.0 hypothetical protein compare
MPMX19_04535 -0.7 -1.8 Maleate isomerase compare
MPMX19_00432 -0.7 -2.1 hypothetical protein compare
MPMX19_04792 -0.7 -2.4 hypothetical protein compare
MPMX19_05511 -0.7 -1.6 hypothetical protein compare
MPMX19_05442 -0.7 -1.7 Ribosomal large subunit pseudouridine synthase D compare
MPMX19_00208 -0.7 -1.3 hypothetical protein compare
MPMX19_06429 -0.7 -2.4 HTH-type transcriptional regulator HmrR compare
MPMX19_04759 -0.7 -2.1 HTH-type transcriptional regulator LutR compare
MPMX19_06044 -0.7 -1.4 hypothetical protein compare
MPMX19_01314 -0.7 -2.8 hypothetical protein compare
MPMX19_06880 -0.7 -1.2 Validamycin A dioxygenase compare
MPMX19_00139 -0.7 -2.3 hypothetical protein compare
MPMX19_05787 -0.7 -2.8 Methylglyoxal synthase compare
MPMX19_01201 -0.7 -1.9 hypothetical protein compare
MPMX19_03772 -0.7 -1.7 hypothetical protein compare
MPMX19_03784 -0.7 -1.7 hypothetical protein compare
MPMX19_00136 -0.7 -4.7 hypothetical protein compare
MPMX19_00236 -0.7 -1.7 HTH-type transcriptional regulator IscR compare
MPMX19_02235 -0.7 -2.0 tRNA-Ala compare
MPMX19_06580 -0.7 -3.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_00933 -0.7 -2.1 hypothetical protein compare
MPMX19_06581 -0.6 -4.2 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 compare
MPMX19_02736 -0.6 -4.1 Tryptophan synthase beta chain compare
MPMX19_00089 -0.6 -1.3 hypothetical protein compare
MPMX19_01113 -0.6 -1.2 Adaptive-response sensory-kinase SasA compare
MPMX19_02700 -0.6 -1.4 hypothetical protein compare
MPMX19_06297 -0.6 -0.8 hypothetical protein compare
MPMX19_03226 -0.6 -2.1 hypothetical protein compare
MPMX19_04271 -0.6 -1.3 Response regulator rcp1 compare
MPMX19_00475 -0.6 -1.3 hypothetical protein compare
MPMX19_02466 -0.6 -1.4 Octopine permease ATP-binding protein P compare
MPMX19_03724 -0.6 -1.2 hypothetical protein compare
MPMX19_03649 -0.6 -3.8 Trehalose transport system permease protein SugA compare
MPMX19_06947 -0.6 -1.7 hypothetical protein compare
MPMX19_03694 -0.6 -1.2 hypothetical protein compare
MPMX19_02392 -0.6 -5.1 Aspartate/prephenate aminotransferase compare
MPMX19_00134 -0.6 -1.9 hypothetical protein compare
MPMX19_04636 -0.6 -1.3 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_06202 -0.6 -1.0 hypothetical protein compare
MPMX19_05162 -0.6 -2.0 Ferrous-iron efflux pump FieF compare
MPMX19_05831 -0.6 -1.5 Protein/nucleic acid deglycase 2 compare
MPMX19_00334 -0.6 -1.5 hypothetical protein compare
MPMX19_00366 -0.6 -2.5 hypothetical protein compare
MPMX19_05459 -0.6 -1.1 hypothetical protein compare
MPMX19_05458 -0.6 -2.1 hypothetical protein compare
MPMX19_06971 -0.6 -2.2 Macrolide export ATP-binding/permease protein MacB compare
MPMX19_02967 -0.6 -3.4 Efflux pump periplasmic linker BepF compare
MPMX19_01149 -0.6 -2.9 Polyphosphate kinase compare
MPMX19_03165 -0.6 -1.4 hypothetical protein compare
MPMX19_04968 -0.6 -1.5 hypothetical protein compare
MPMX19_00609 -0.6 -2.0 Chemotaxis protein CheY compare
MPMX19_00153 -0.6 -2.2 hypothetical protein compare
MPMX19_01652 -0.6 -1.9 hypothetical protein compare
MPMX19_03798 -0.6 -1.8 hypothetical protein compare
MPMX19_02860 -0.6 -1.8 hypothetical protein compare
MPMX19_03526 -0.6 -2.2 Quinate/shikimate dehydrogenase (NAD(+)) compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum across organisms