Experiment set1S54 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_06759 +0.9 3.5 Taurine import ATP-binding protein TauB compare
MPMX19_05551 +0.9 2.2 Chemotaxis protein CheY compare
MPMX19_06519 +0.8 1.7 HTH-type transcriptional repressor NagR compare
MPMX19_01617 +0.8 1.8 hypothetical protein compare
MPMX19_03069 +0.8 2.2 hypothetical protein compare
MPMX19_01609 +0.8 2.4 hypothetical protein compare
MPMX19_06510 +0.8 2.0 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_00212 +0.8 6.2 Nitrogen fixation regulation protein FixK compare
MPMX19_05798 +0.7 2.2 HTH-type transcriptional repressor NanR compare
MPMX19_03476 +0.7 2.9 hypothetical protein compare
MPMX19_05143 +0.7 1.7 hypothetical protein compare
MPMX19_04449 +0.7 1.7 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_05176 +0.7 1.4 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase compare
MPMX19_03800 +0.7 2.5 hypothetical protein compare
MPMX19_05333 +0.7 2.0 Thymidine phosphorylase compare
MPMX19_03093 +0.7 2.7 Manganese import ATP-binding protein ScaC compare
MPMX19_01789 +0.7 1.3 Urease subunit beta compare
MPMX19_03846 +0.7 2.1 hypothetical protein compare
MPMX19_04726 +0.7 1.8 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_04458 +0.7 2.8 2-hydroxy-3-oxopropionate reductase compare
MPMX19_04051 +0.7 3.3 Alcohol dehydrogenase compare
MPMX19_05193 +0.6 1.4 Taurine-binding periplasmic protein compare
MPMX19_03667 +0.6 2.4 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_06843 +0.6 2.1 hypothetical protein compare
MPMX19_01811 +0.6 1.9 hypothetical protein compare
MPMX19_00319 +0.6 1.3 hypothetical protein compare
MPMX19_02279 +0.6 1.7 hypothetical protein compare
MPMX19_04043 +0.6 2.2 Aldehyde-alcohol dehydrogenase compare
MPMX19_02778 +0.6 2.0 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_01616 +0.6 1.8 hypothetical protein compare
MPMX19_00813 +0.6 1.7 HTH-type transcriptional regulator CysL compare
MPMX19_00074 +0.6 1.5 Electron transfer flavoprotein subunit beta compare
MPMX19_03421 +0.6 2.1 hypothetical protein compare
MPMX19_05195 +0.6 2.1 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_01493 +0.6 1.4 Flagellar assembly protein FliX compare
MPMX19_02779 +0.6 1.8 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_06263 +0.6 1.5 hypothetical protein compare
MPMX19_03281 +0.6 1.9 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_05016 +0.6 1.3 Sensor histidine kinase RcsC compare
MPMX19_06804 +0.6 1.9 hypothetical protein compare
MPMX19_05280 +0.6 3.5 hypothetical protein compare
MPMX19_05364 +0.6 2.1 Acetate CoA-transferase subunit beta compare
MPMX19_06774 +0.6 3.0 hypothetical protein compare
MPMX19_01864 +0.6 1.6 Regulatory protein AtoC compare
MPMX19_03109 +0.5 1.6 hypothetical protein compare
MPMX19_01141 +0.5 2.8 hypothetical protein compare
MPMX19_05470 +0.5 1.6 hypothetical protein compare
MPMX19_05295 +0.5 1.8 hypothetical protein compare
MPMX19_04095 +0.5 2.3 hypothetical protein compare
MPMX19_06964 +0.5 2.1 HTH-type transcriptional regulator KipR compare
MPMX19_02318 +0.5 2.6 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_05726 +0.5 1.6 hypothetical protein compare
MPMX19_06746 +0.5 0.9 Chemotaxis protein CheW compare
MPMX19_04743 +0.5 2.0 Formyltransferase/hydrolase complex subunit D compare
MPMX19_02703 +0.5 1.8 hypothetical protein compare
MPMX19_03149 +0.5 3.0 hypothetical protein compare
MPMX19_01271 +0.5 2.3 Vitamin B12 import ATP-binding protein BtuD compare
MPMX19_05043 +0.5 2.6 hypothetical protein compare
MPMX19_06272 +0.5 0.9 hypothetical protein compare
MPMX19_04579 +0.5 1.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX19_06351 +0.5 1.4 Arsenate reductase compare
MPMX19_03868 +0.5 1.4 Xylitol-binding protein compare
MPMX19_04118 +0.5 1.3 Sensor histidine kinase RcsC compare
MPMX19_02136 +0.5 0.9 Phage shock protein A compare
MPMX19_05207 +0.5 0.9 Hemolysin secretion protein D, plasmid compare
MPMX19_05393 +0.5 1.7 hypothetical protein compare
MPMX19_05586 +0.5 0.9 hypothetical protein compare
MPMX19_04008 +0.5 1.1 Beta-peptidyl aminopeptidase BapA compare
MPMX19_06691 +0.5 1.6 hypothetical protein compare
MPMX19_06569 +0.5 1.9 hypothetical protein compare
MPMX19_05850 +0.5 1.5 hypothetical protein compare
MPMX19_03916 +0.5 1.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
MPMX19_05178 +0.5 2.5 Alkanesulfonate monooxygenase compare
MPMX19_02063 +0.5 2.2 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_06773 +0.5 1.9 2-(R)-hydroxypropyl-CoM dehydrogenase compare
MPMX19_05082 +0.5 1.5 hypothetical protein compare
MPMX19_02492 +0.5 1.7 hypothetical protein compare
MPMX19_04286 +0.5 2.3 hypothetical protein compare
MPMX19_00166 +0.5 1.3 hypothetical protein compare
MPMX19_03073 +0.5 1.4 hypothetical protein compare
MPMX19_04738 +0.5 1.6 hypothetical protein compare
MPMX19_06646 +0.5 2.0 hypothetical protein compare
MPMX19_04508 +0.5 1.8 Phosphoglycolate phosphatase compare
MPMX19_03329 +0.5 1.6 hypothetical protein compare
MPMX19_00687 +0.5 1.2 hypothetical protein compare
MPMX19_03883 +0.5 2.2 hypothetical protein compare
MPMX19_01614 +0.5 1.1 hypothetical protein compare
MPMX19_03000 +0.5 2.3 Galactitol 2-dehydrogenase compare
MPMX19_06907 +0.5 1.8 L-talarate/galactarate dehydratase compare
MPMX19_00266 +0.5 1.4 hypothetical protein compare
MPMX19_05096 +0.4 1.7 L-cystine import ATP-binding protein TcyC compare
MPMX19_06979 +0.4 1.0 hypothetical protein compare
MPMX19_06535 +0.4 1.5 hypothetical protein compare
MPMX19_03984 +0.4 1.9 hypothetical protein compare
MPMX19_06299 +0.4 2.2 hypothetical protein compare
MPMX19_02149 +0.4 1.8 hypothetical protein compare
MPMX19_02109 +0.4 1.9 hypothetical protein compare
MPMX19_05697 +0.4 1.5 hypothetical protein compare
MPMX19_03320 +0.4 1.6 hypothetical protein compare
MPMX19_05813 +0.4 1.7 2-hydroxy-3-oxopropionate reductase compare
MPMX19_00257 +0.4 2.4 hypothetical protein compare
MPMX19_04648 +0.4 1.6 hypothetical protein compare
MPMX19_03305 +0.4 1.4 L-fucose mutarotase compare
MPMX19_04703 +0.4 2.3 L-serine dehydratase TdcG compare
MPMX19_04013 +0.4 1.4 hypothetical protein compare
MPMX19_00008 +0.4 1.0 hypothetical protein compare
MPMX19_04549 +0.4 1.7 L-cystine-binding protein FliY compare
MPMX19_04262 +0.4 2.0 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_03752 +0.4 1.1 hypothetical protein compare
MPMX19_00206 +0.4 3.1 Cytochrome c oxidase subunit 1, bacteroid compare
MPMX19_00263 +0.4 1.3 hypothetical protein compare
MPMX19_05075 +0.4 2.0 hypothetical protein compare
MPMX19_02875 +0.4 1.4 hypothetical protein compare
MPMX19_02366 +0.4 2.6 hypothetical protein compare
MPMX19_05031 +0.4 2.3 ATP synthase gamma chain compare
MPMX19_01083 +0.4 1.9 hypothetical protein compare
MPMX19_02772 +0.4 1.5 N-acetylcysteine deacetylase compare
MPMX19_04781 +0.4 2.1 hypothetical protein compare
MPMX19_02514 +0.4 0.8 hypothetical protein compare
MPMX19_04518 +0.4 2.0 Acetyl-CoA:oxalate CoA-transferase compare
MPMX19_03265 +0.4 2.8 Spermidine/putrescine import ATP-binding protein PotA compare
MPMX19_00875 +0.4 1.7 hypothetical protein compare
MPMX19_00256 +0.4 1.8 hypothetical protein compare
MPMX19_02885 +0.4 2.9 Citrate transporter compare
MPMX19_00318 +0.4 2.0 hypothetical protein compare
MPMX19_04687 +0.4 1.0 Atrazine chlorohydrolase compare
MPMX19_03715 +0.4 1.7 Response regulator ArlR compare
MPMX19_02977 +0.4 1.7 2-iminobutanoate/2-iminopropanoate deaminase compare
MPMX19_01613 +0.4 1.5 hypothetical protein compare
MPMX19_02092 +0.4 1.3 hypothetical protein compare
MPMX19_06526 +0.4 1.6 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_05654 +0.4 2.8 hypothetical protein compare
MPMX19_04243 +0.4 2.0 2,3-dehydroadipyl-CoA hydratase compare
MPMX19_00414 +0.4 0.7 Pyruvate dehydrogenase complex repressor compare
MPMX19_04633 +0.4 1.5 hypothetical protein compare
MPMX19_05027 +0.4 2.8 hypothetical protein compare
MPMX19_04750 +0.4 1.9 hypothetical protein compare
MPMX19_06763 +0.4 1.6 hypothetical protein compare
MPMX19_01454 +0.4 1.1 hypothetical protein compare
MPMX19_05469 +0.4 1.5 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_05352 +0.4 0.8 putative cysteine-rich protein YhjQ compare
MPMX19_06385 +0.4 1.5 hypothetical protein compare
MPMX19_00887 +0.4 0.6 hypothetical protein compare
MPMX19_05036 +0.4 2.1 hypothetical protein compare
MPMX19_03509 +0.4 1.3 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic compare
MPMX19_02714 +0.4 1.3 hypothetical protein compare
MPMX19_05220 +0.4 1.1 hypothetical protein compare
MPMX19_01643 +0.4 2.3 hypothetical protein compare
MPMX19_04500 +0.4 1.9 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_00809 +0.4 1.7 Autoinducer 2 sensor kinase/phosphatase LuxQ compare
MPMX19_05247 +0.4 1.4 Molybdenum cofactor guanylyltransferase compare
MPMX19_04638 +0.4 0.7 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_00822 +0.4 2.1 Divalent metal cation transporter MntH compare
MPMX19_06221 +0.4 1.9 L-2-keto-3-deoxyarabonate dehydratase compare
MPMX19_06805 +0.4 1.7 hypothetical protein compare
MPMX19_00716 +0.4 2.3 Hydrogenase maturation factor HypD compare
MPMX19_01088 +0.4 1.6 hypothetical protein compare
MPMX19_03102 +0.4 2.1 hypothetical protein compare
MPMX19_00898 +0.4 2.5 hypothetical protein compare
MPMX19_03406 +0.4 1.8 HTH-type transcriptional regulator HdfR compare
MPMX19_04662 +0.4 2.1 High-affinity branched-chain amino acid transport system permease protein LivH compare
MPMX19_01703 +0.4 0.5 hypothetical protein compare
MPMX19_05605 +0.4 1.4 hypothetical protein compare
MPMX19_04609 +0.4 1.8 Putative short-chain type dehydrogenase/reductase compare
MPMX19_00763 +0.4 2.6 hypothetical protein compare
MPMX19_04110 +0.4 1.6 Bifunctional protein PaaZ compare
MPMX19_06217 +0.4 1.5 Fructose import ATP-binding protein FruK compare
MPMX19_06255 +0.4 1.5 hypothetical protein compare
MPMX19_04489 +0.4 2.5 D-threonine aldolase compare
MPMX19_04779 +0.4 1.0 hypothetical protein compare
MPMX19_06981 +0.4 1.2 hypothetical protein compare
MPMX19_05578 +0.4 2.3 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_06456 +0.4 0.8 hypothetical protein compare
MPMX19_05181 +0.4 0.6 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_06762 +0.4 0.8 Peptide deformylase compare
MPMX19_06465 +0.4 1.3 hypothetical protein compare
MPMX19_04700 +0.4 1.4 Adaptive-response sensory-kinase SasA compare
MPMX19_01405 +0.4 2.1 hypothetical protein compare
MPMX19_05186 +0.3 2.2 Thiosulfate sulfurtransferase GlpE compare
MPMX19_00576 +0.3 0.8 hypothetical protein compare
MPMX19_04054 +0.3 2.1 Adaptive-response sensory-kinase SasA compare
MPMX19_02372 +0.3 1.9 hypothetical protein compare
MPMX19_01621 +0.3 2.1 hypothetical protein compare
MPMX19_06399 +0.3 1.3 hypothetical protein compare
MPMX19_03236 +0.3 1.9 Protein MbtH compare
MPMX19_01701 +0.3 2.5 hypothetical protein compare
MPMX19_04742 +0.3 2.5 Formyltransferase/hydrolase complex Fhc subunit A compare
MPMX19_06197 +0.3 0.7 hypothetical protein compare
MPMX19_05190 +0.3 1.7 putative malonic semialdehyde reductase RutE compare
MPMX19_03114 +0.3 1.4 hypothetical protein compare
MPMX19_05430 +0.3 1.1 HTH-type transcriptional regulator DmlR compare
MPMX19_02499 +0.3 1.4 hypothetical protein compare
MPMX19_00754 +0.3 2.4 hypothetical protein compare
MPMX19_04793 +0.3 2.1 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_04025 +0.3 1.5 hypothetical protein compare
MPMX19_06768 +0.3 1.0 hypothetical protein compare
MPMX19_03549 +0.3 1.1 HTH-type transcriptional regulator PgrR compare
MPMX19_00423 +0.3 1.4 (E)-2-((N-methylformamido)methylene)succinate hydrolase compare
MPMX19_03296 +0.3 1.6 L-carnitine dehydrogenase compare
MPMX19_04301 +0.3 2.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum across organisms