Experiment set1S539 for Paraburkholderia sabiae LMG 24235

Compare to:

D,L-Malic Acid carbon source

200 most important genes:

  gene name fitness t score description  
QEN71_RS01445 -6.2 -4.3 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
QEN71_RS17850 -5.4 -5.2 homoserine kinase compare
QEN71_RS27825 -5.3 -8.1 phosphoribosyl-ATP diphosphatase compare
QEN71_RS27565 -5.2 -7.2 indole-3-glycerol phosphate synthase TrpC compare
QEN71_RS27855 -5.0 -7.6 imidazoleglycerol-phosphate dehydratase HisB compare
QEN71_RS06040 -4.9 -16.7 potassium transporter Kup compare
QEN71_RS28035 -4.9 -13.8 3-dehydroquinate synthase compare
QEN71_RS09235 -4.7 -12.6 argininosuccinate synthase compare
QEN71_RS01465 -4.7 -22.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
QEN71_RS00290 -4.7 -18.1 homoserine O-acetyltransferase compare
QEN71_RS01990 -4.7 -25.9 FAD/FMN-binding oxidoreductase compare
QEN71_RS26600 -4.7 -8.9 pyrroline-5-carboxylate reductase compare
QEN71_RS02425 -4.6 -3.2 phosphoglycerate kinase compare
QEN71_RS28715 -4.5 -5.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
QEN71_RS28010 -4.4 -25.3 glutamate synthase-related protein compare
QEN71_RS27870 -4.4 -17.2 ATP phosphoribosyltransferase compare
QEN71_RS04710 -4.4 -18.2 trehalose-phosphatase compare
QEN71_RS27830 -4.4 -6.7 phosphoribosyl-AMP cyclohydrolase compare
QEN71_RS27840 -4.4 -11.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
QEN71_RS28040 -4.3 -9.6 shikimate kinase compare
QEN71_RS27845 -4.3 -15.6 imidazole glycerol phosphate synthase subunit HisH compare
QEN71_RS27865 -4.3 -17.3 histidinol dehydrogenase compare
QEN71_RS28005 -4.2 -5.0 glutamate synthase subunit beta compare
QEN71_RS14065 -4.2 -2.9 hypothetical protein compare
QEN71_RS28080 -4.2 -11.8 diaminopimelate decarboxylase compare
QEN71_RS27550 -4.2 -23.0 anthranilate synthase component I compare
QEN71_RS06025 -4.1 -17.4 ATP phosphoribosyltransferase regulatory subunit compare
QEN71_RS27555 -4.1 -2.9 aminodeoxychorismate/anthranilate synthase component II compare
QEN71_RS02785 -4.1 -18.5 ornithine carbamoyltransferase compare
QEN71_RS26235 -4.1 -4.0 serine hydroxymethyltransferase compare
QEN71_RS01755 -4.0 -12.7 RNA polymerase factor sigma-54 compare
QEN71_RS17640 -4.0 -12.1 phosphoribosylanthranilate isomerase compare
QEN71_RS27835 -4.0 -13.7 imidazole glycerol phosphate synthase subunit HisF compare
QEN71_RS04065 -4.0 -13.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
QEN71_RS01985 -4.0 -18.4 threonine ammonia-lyase, biosynthetic compare
QEN71_RS17655 -4.0 -15.1 tryptophan synthase subunit alpha compare
QEN71_RS05215 -3.9 -13.9 chorismate synthase compare
QEN71_RS22405 -3.9 -16.9 homoserine dehydrogenase compare
QEN71_RS21920 -3.9 -22.5 phosphoribosylformylglycinamidine synthase compare
QEN71_RS22400 -3.8 -12.3 threonine synthase compare
QEN71_RS27560 -3.8 -12.8 anthranilate phosphoribosyltransferase compare
QEN71_RS25235 -3.8 -12.6 sulfate adenylyltransferase subunit 1 compare
QEN71_RS27005 -3.8 -8.0 type I glyceraldehyde-3-phosphate dehydrogenase compare
QEN71_RS22160 -3.8 -19.3 phosphoserine phosphatase SerB compare
QEN71_RS24970 -3.7 -6.5 argininosuccinate lyase compare
QEN71_RS01460 -3.7 -8.1 protein-export chaperone SecB compare
QEN71_RS06505 -3.7 -7.5 phosphoenolpyruvate synthase compare
QEN71_RS17680 -3.7 -19.2 amidophosphoribosyltransferase compare
QEN71_RS04070 -3.7 -12.3 prephenate dehydratase compare
QEN71_RS24225 -3.6 -17.2 acetolactate synthase 3 catalytic subunit compare
QEN71_RS24215 -3.6 -12.0 ketol-acid reductoisomerase compare
QEN71_RS42235 -3.6 -2.4 nitrogenase stabilizing/protective protein NifW compare
QEN71_RS25420 -3.5 -5.8 oligosaccharide flippase family protein compare
QEN71_RS24165 -3.5 -11.1 triose-phosphate isomerase compare
QEN71_RS02440 -3.5 -4.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
QEN71_RS25725 -3.5 -8.9 ABC transporter ATP-binding protein compare
QEN71_RS26445 -3.4 -14.3 phosphoribosylformylglycinamidine cyclo-ligase compare
QEN71_RS26460 -3.4 -8.6 HAD family hydrolase compare
QEN71_RS25245 -3.4 -3.9 phosphoadenylyl-sulfate reductase compare
QEN71_RS24450 -3.4 -16.1 O-antigen ligase family protein compare
QEN71_RS25710 -3.4 -3.3 GNAT family N-acetyltransferase compare
QEN71_RS24400 -3.4 -10.0 phosphoribosylamine--glycine ligase compare
QEN71_RS17605 -3.3 -8.3 3-isopropylmalate dehydratase large subunit compare
QEN71_RS25260 -3.3 -14.3 CysB family HTH-type transcriptional regulator compare
QEN71_RS27130 -3.3 -11.3 shikimate dehydrogenase compare
QEN71_RS02450 -3.2 -3.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
QEN71_RS17645 -3.2 -8.5 tryptophan synthase subunit beta compare
QEN71_RS22595 -3.1 -10.2 transcriptional repressor LexA compare
QEN71_RS17620 -3.1 -6.3 3-isopropylmalate dehydrogenase compare
QEN71_RS26780 -3.1 -2.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
QEN71_RS06385 -3.1 -7.7 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
QEN71_RS25700 -3.1 -3.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
QEN71_RS25630 -3.1 -3.0 NAD-dependent epimerase/dehydratase family protein compare
QEN71_RS25690 -3.1 -2.1 glycosyltransferase family 4 protein compare
QEN71_RS27270 -3.1 -11.0 glutamate 5-kinase compare
QEN71_RS08115 -3.0 -2.8 DUF2164 domain-containing protein compare
QEN71_RS25150 -2.9 -4.9 ATPase compare
QEN71_RS06190 -2.9 -2.0 C40 family peptidase compare
QEN71_RS25730 -2.9 -6.3 ABC transporter permease compare
QEN71_RS01375 -2.8 -7.7 sigma-54 dependent transcriptional regulator compare
QEN71_RS00235 -2.8 -1.6 rod shape-determining protein MreD compare
QEN71_RS26190 -2.8 -5.5 DUF883 family protein compare
QEN71_RS25425 -2.8 -4.2 glycosyltransferase compare
QEN71_RS17615 -2.8 -4.7 3-isopropylmalate dehydratase small subunit compare
QEN71_RS17600 -2.8 -15.8 citrate synthase compare
QEN71_RS02250 -2.8 -4.0 DeoR/GlpR family DNA-binding transcription regulator compare
QEN71_RS03385 -2.7 -8.0 DNA translocase FtsK compare
QEN71_RS01440 -2.7 -3.2 S41 family peptidase compare
QEN71_RS04085 -2.7 -7.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
QEN71_RS05720 -2.7 -17.5 oxygen sensor histidine kinase FixL compare
QEN71_RS25715 -2.7 -4.4 acetyltransferase compare
QEN71_RS01365 -2.7 -11.6 dicarboxylate/amino acid:cation symporter compare
QEN71_RS25255 -2.6 -10.1 nitrite/sulfite reductase compare
QEN71_RS03520 -2.6 -7.7 septum site-determining protein MinD compare
QEN71_RS25240 -2.6 -6.4 sulfate adenylyltransferase subunit CysD compare
QEN71_RS32715 -2.6 -1.8 formylmethanofuran dehydrogenase compare
QEN71_RS00180 -2.5 -4.5 DUF4390 domain-containing protein compare
QEN71_RS27425 -2.4 -9.5 penicillin-binding protein 2 compare
QEN71_RS25720 -2.4 -5.0 SAM-dependent methyltransferase compare
QEN71_RS06455 -2.4 -8.3 RIP metalloprotease RseP compare
QEN71_RS06310 -2.4 -1.6 lysophospholipid transporter LplT compare
QEN71_RS26195 -2.4 -3.5 phage holin family protein compare
QEN71_RS01420 -2.3 -5.9 PTS sugar transporter subunit IIB compare
QEN71_RS24945 -2.3 -5.6 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
QEN71_RS25705 -2.3 -2.7 FdtA/QdtA family cupin domain-containing protein compare
QEN71_RS01430 -2.3 -2.7 phosphoenolpyruvate--protein phosphotransferase compare
QEN71_RS21935 -2.3 -6.3 glucose-6-phosphate isomerase compare
QEN71_RS29475 -2.2 -13.5 YbdK family carboxylate-amine ligase compare
QEN71_RS21975 -2.2 -8.2 endopeptidase La compare
QEN71_RS25695 -2.2 -8.2 glycosyltransferase family 4 protein compare
QEN71_RS25250 -2.2 -4.0 DUF934 domain-containing protein compare
QEN71_RS04240 -2.2 -1.5 DUF2007 domain-containing protein compare
QEN71_RS03005 -2.2 -6.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
QEN71_RS25625 -2.2 -14.2 glycosyltransferase family 2 protein compare
QEN71_RS21980 -2.2 -4.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
QEN71_RS24220 -2.1 -3.8 acetolactate synthase small subunit compare
QEN71_RS05420 -2.1 -1.7 amino acid ABC transporter ATP-binding protein compare
QEN71_RS27895 -2.1 -1.8 STAS domain-containing protein compare
QEN71_RS04575 -2.1 -5.6 RNA polymerase sigma factor RpoE compare
QEN71_RS44210 -2.1 -2.2 transposase compare
QEN71_RS29480 -2.1 -13.8 cation:proton antiporter compare
QEN71_RS06355 -2.0 -4.5 succinyl-diaminopimelate desuccinylase compare
QEN71_RS05480 -2.0 -14.5 phosphomethylpyrimidine synthase ThiC compare
QEN71_RS38150 -2.0 -1.4 hypothetical protein compare
QEN71_RS25220 -2.0 -1.4 CbiX/SirB N-terminal domain-containing protein compare
QEN71_RS24240 -2.0 -6.0 DUF3106 domain-containing protein compare
QEN71_RS01745 -2.0 -4.8 PTS sugar transporter subunit IIA compare
QEN71_RS39265 -2.0 -1.3 LysR family transcriptional regulator compare
QEN71_RS24160 -1.9 -4.9 preprotein translocase subunit SecG compare
QEN71_RS26480 -1.9 -2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
QEN71_RS03925 -1.9 -2.1 hypothetical protein compare
QEN71_RS36410 -1.8 -1.4 HutD family protein compare
QEN71_RS32005 -1.8 -3.9 tartrate dehydrogenase compare
QEN71_RS26775 -1.8 -3.7 Fis family transcriptional regulator compare
QEN71_RS04315 -1.8 -5.8 hypothetical protein compare
QEN71_RS42390 -1.8 -1.2 nitrogenase iron protein compare
QEN71_RS24940 -1.8 -9.2 heme biosynthesis protein HemY compare
QEN71_RS22330 -1.8 -2.8 glycosyltransferase family 39 protein compare
QEN71_RS39170 -1.7 -1.6 DUF3331 domain-containing protein compare
QEN71_RS32515 -1.7 -1.9 aldehyde dehydrogenase (NADP(+)) compare
QEN71_RS24030 -1.7 -2.3 histidine phosphatase family protein compare
QEN71_RS17670 -1.7 -7.7 SPOR domain-containing protein compare
QEN71_RS25735 -1.7 -11.0 glycosyltransferase family 2 protein compare
QEN71_RS26045 -1.6 -1.6 hypothetical protein compare
QEN71_RS41145 -1.6 -2.6 hypothetical protein compare
QEN71_RS33155 -1.6 -3.4 DUF802 domain-containing protein compare
QEN71_RS40835 -1.6 -1.3 IS110 family transposase compare
QEN71_RS01370 -1.6 -10.2 ATP-binding protein compare
QEN71_RS19595 -1.6 -3.5 class I adenylate-forming enzyme family protein compare
QEN71_RS04080 -1.6 -5.8 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
QEN71_RS25600 -1.6 -8.2 SDR family oxidoreductase compare
QEN71_RS19015 -1.6 -1.5 hypothetical protein compare
QEN71_RS26545 -1.6 -11.7 AsmA-like C-terminal region-containing protein compare
QEN71_RS28980 -1.6 -4.9 chemotaxis response regulator CheY compare
QEN71_RS16915 -1.6 -3.1 cupin domain-containing protein compare
QEN71_RS03515 -1.5 -3.2 septum site-determining protein MinC compare
QEN71_RS26525 -1.5 -8.2 heat-inducible transcriptional repressor HrcA compare
QEN71_RS41030 -1.5 -3.1 XRE family transcriptional regulator compare
QEN71_RS25605 -1.5 -12.3 glycosyltransferase family 2 protein compare
QEN71_RS02370 -1.5 -9.6 Wzy polymerase domain-containing protein compare
QEN71_RS40135 -1.5 -1.1 ATP-binding protein compare
QEN71_RS26560 -1.4 -9.2 3-deoxy-7-phosphoheptulonate synthase AroG compare
QEN71_RS17675 -1.4 -4.5 CvpA family protein compare
QEN71_RS03040 -1.4 -7.5 phosphoribosylglycinamide formyltransferase compare
QEN71_RS33430 -1.4 -0.9 hypothetical protein compare
QEN71_RS21000 -1.4 -1.3 DUF4148 domain-containing protein compare
QEN71_RS08645 -1.4 -1.9 GTP cyclohydrolase II compare
QEN71_RS22490 -1.4 -2.0 50S ribosomal protein L9 compare
QEN71_RS37805 -1.4 -2.5 nitrite reductase small subunit NirD compare
QEN71_RS37055 -1.3 -1.8 hypothetical protein compare
QEN71_RS03700 -1.3 -1.4 cold-shock protein compare
QEN71_RS37085 -1.3 -3.4 aldehyde dehydrogenase family protein compare
QEN71_RS05035 -1.3 -1.5 ABC transporter ATP-binding protein compare
QEN71_RS23990 -1.3 -2.9 hypothetical protein compare
QEN71_RS16400 -1.3 -7.0 adenosyl-hopene transferase HpnH compare
QEN71_RS34095 -1.3 -1.1 ATP-grasp domain-containing protein compare
QEN71_RS42325 -1.3 -1.7 transposase compare
QEN71_RS03065 -1.3 -4.5 carboxylating nicotinate-nucleotide diphosphorylase compare
QEN71_RS03070 -1.3 -9.4 L-aspartate oxidase compare
QEN71_RS08930 -1.3 -1.0 hypothetical protein compare
QEN71_RS04235 -1.3 -5.8 CobD/CbiB family protein compare
QEN71_RS03745 -1.2 -3.1 TlpA family protein disulfide reductase compare
QEN71_RS31740 -1.2 -3.4 type VI secretion system-associated protein TagF compare
QEN71_RS28420 -1.2 -2.7 DUF1835 domain-containing protein compare
QEN71_RS20840 -1.2 -3.1 DUF1109 domain-containing protein compare
QEN71_RS08140 -1.2 -2.1 2-hydroxyacid dehydrogenase compare
QEN71_RS39410 -1.2 -2.5 enoyl-CoA hydratase-related protein compare
QEN71_RS06050 -1.2 -6.5 colicin transporter compare
QEN71_RS25485 -1.2 -0.9 ATP-binding protein compare
QEN71_RS24090 -1.2 -8.2 NADH-quinone oxidoreductase subunit M compare
QEN71_RS32530 -1.2 -2.0 flagellin domain-containing protein compare
QEN71_RS21425 -1.2 -5.3 HAMP domain-containing sensor histidine kinase compare
QEN71_RS03060 -1.2 -8.6 quinolinate synthase NadA compare
QEN71_RS16840 -1.2 -3.6 M55 family metallopeptidase compare
QEN71_RS25105 -1.2 -4.5 adenosylcobinamide-phosphate synthase CbiB compare
QEN71_RS30280 -1.2 -1.7 alpha/beta hydrolase compare
QEN71_RS37555 -1.2 -1.7 response regulator compare
QEN71_RS38570 -1.2 -1.0 TetR/AcrR family transcriptional regulator compare
QEN71_RS20635 -1.2 -2.1 hypothetical protein compare
QEN71_RS16650 -1.2 -2.0 nucleotide pyrophosphohydrolase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D,L-Malic Acid in Paraburkholderia sabiae LMG 24235

For carbon source D,L-Malic Acid across organisms