Experiment set1S539 for Paraburkholderia sabiae LMG 24235

Compare to:

D,L-Malic Acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
QEN71_RS28955 +2.9 20.1 flagellar biosynthesis protein FlhA compare
QEN71_RS28885 +2.8 15.1 flagellar basal body P-ring protein FlgI compare
QEN71_RS28915 +2.8 15.0 flagellar basal body rod protein FlgC compare
QEN71_RS28905 +2.8 22.4 flagellar hook protein FlgE compare
QEN71_RS15185 +2.7 24.9 RNA polymerase sigma factor RpoD compare
QEN71_RS28900 +2.6 8.5 flagellar basal-body rod protein FlgF compare
QEN71_RS28895 +2.6 11.7 flagellar basal-body rod protein FlgG compare
QEN71_RS28920 +2.6 6.0 flagellar basal body rod protein FlgB compare
QEN71_RS28855 +2.6 22.5 flagellar biosynthetic protein FliR compare
QEN71_RS28960 +2.5 18.0 flagellar biosynthesis protein FlhB compare
QEN71_RS28925 +2.4 14.5 flagellar basal body P-ring formation chaperone FlgA compare
QEN71_RS15190 +2.3 8.9 hypothetical protein compare
QEN71_RS28880 +2.3 11.7 flagellar assembly peptidoglycan hydrolase FlgJ compare
QEN71_RS28815 +2.1 12.6 flagellar export protein FliJ compare
QEN71_RS28805 +2.1 11.6 flagellar assembly protein FliH compare
QEN71_RS28940 +2.0 11.7 RNA polymerase sigma factor FliA compare
QEN71_RS28845 +2.0 15.4 flagellar type III secretion system pore protein FliP compare
QEN71_RS28850 +2.0 13.8 flagellar biosynthesis protein FliQ compare
QEN71_RS28840 +1.9 12.9 flagellar biosynthetic protein FliO compare
QEN71_RS28820 +1.9 11.5 flagellar hook-length control protein FliK compare
QEN71_RS28810 +1.9 9.1 flagellar protein export ATPase FliI compare
QEN71_RS42215 +1.7 5.6 4Fe-4S dicluster domain-containing protein compare
QEN71_RS28785 +1.6 13.5 flagellar export chaperone FliS compare
QEN71_RS28890 +1.5 6.1 flagellar basal body L-ring protein FlgH compare
QEN71_RS08505 +1.5 2.1 undecaprenyl-phosphate glucose phosphotransferase compare
QEN71_RS28860 +1.4 12.2 flagellar hook-associated protein FlgL compare
QEN71_RS29035 +1.4 11.2 flagellar transcriptional regulator FlhD compare
QEN71_RS39945 +1.4 2.0 IS5/IS1182 family transposase compare
QEN71_RS28910 +1.4 6.0 flagellar hook assembly protein FlgD compare
QEN71_RS20980 +1.4 2.0 CHAP domain-containing protein compare
QEN71_RS04585 +1.4 10.5 MucB/RseB C-terminal domain-containing protein compare
QEN71_RS28865 +1.4 12.0 flagellar hook-associated protein FlgK compare
QEN71_RS29495 +1.4 3.4 HU family DNA-binding protein compare
QEN71_RS07610 +1.3 2.2 hypothetical protein compare
QEN71_RS21255 +1.3 6.2 DeoR/GlpR family DNA-binding transcription regulator compare
QEN71_RS28800 +1.3 10.1 flagellar motor switch protein FliG compare
QEN71_RS28950 +1.3 7.9 flagellar biosynthesis protein FlhF compare
QEN71_RS22025 +1.3 7.1 hypothetical protein compare
QEN71_RS28795 +1.3 12.4 flagellar basal-body MS-ring/collar protein FliF compare
QEN71_RS28830 +1.3 10.8 flagellar motor switch protein FliM compare
QEN71_RS29090 +1.3 5.2 flagellin domain-containing protein compare
QEN71_RS43650 +1.3 2.7 NADAR family protein compare
QEN71_RS39800 +1.3 3.2 IS5 family transposase compare
QEN71_RS38070 +1.2 2.3 type III secretion system export apparatus subunit SctT compare
QEN71_RS29095 +1.2 8.6 flagellar filament capping protein FliD compare
QEN71_RS29135 +1.1 8.6 glycosyltransferase compare
QEN71_RS28825 +1.1 8.2 flagellar basal body-associated protein FliL compare
QEN71_RS29960 +1.1 2.4 sugar phosphate isomerase/epimerase compare
QEN71_RS17630 +1.1 6.9 FimV/HubP family polar landmark protein compare
QEN71_RS21970 +1.1 1.4 HU family DNA-binding protein compare
QEN71_RS38700 +1.1 1.8 NnrU family protein compare
QEN71_RS10535 +1.1 1.5 hypothetical protein compare
QEN71_RS32935 +1.1 2.1 type 1 glutamine amidotransferase domain-containing protein compare
QEN71_RS36830 +1.1 2.6 type III secretion system cytoplasmic ring protein SctQ compare
QEN71_RS38105 +1.1 3.7 hypothetical protein compare
QEN71_RS33325 +1.1 1.4 O-methyltransferase compare
QEN71_RS21800 +1.1 6.8 ankyrin repeat domain-containing protein compare
QEN71_RS14745 +1.0 7.0 phosphocholine cytidylyltransferase family protein compare
QEN71_RS42745 +1.0 2.1 ATP-binding protein compare
QEN71_RS14450 +1.0 7.5 phosphonopyruvate decarboxylase compare
QEN71_RS34530 +1.0 3.0 type VI secretion system lipoprotein TssJ compare
QEN71_RS14760 +1.0 8.1 CDP-alcohol phosphatidyltransferase family protein compare
QEN71_RS28635 +1.0 9.0 lytic transglycosylase domain-containing protein compare
QEN71_RS37935 +1.0 1.4 efflux transporter outer membrane subunit compare
QEN71_RS07485 +1.0 1.6 4-hydroxyphenylacetate 3-monooxygenase, reductase component compare
QEN71_RS00505 +1.0 8.0 response regulator transcription factor RqpR compare
QEN71_RS28095 +1.0 3.7 c-type cytochrome biogenesis protein CcsB compare
QEN71_RS39405 +1.0 2.4 GMC family oxidoreductase N-terminal domain-containing protein compare
QEN71_RS28930 +1.0 6.5 flagellar biosynthesis anti-sigma factor FlgM compare
QEN71_RS35945 +1.0 2.3 hypothetical protein compare
QEN71_RS23140 +1.0 2.5 hypothetical protein compare
QEN71_RS06800 +1.0 1.9 transposase compare
QEN71_RS42240 +1.0 4.8 homocitrate synthase compare
QEN71_RS31130 +1.0 1.7 4-hydroxyphenylacetate 3-monooxygenase, reductase component compare
QEN71_RS04890 +1.0 2.7 hypothetical protein compare
QEN71_RS23015 +0.9 5.9 RNA chaperone Hfq compare
QEN71_RS10570 +0.9 6.7 response regulator compare
QEN71_RS23020 +0.9 1.8 hypothetical protein compare
QEN71_RS38810 +0.9 1.7 type II 3-dehydroquinate dehydratase compare
QEN71_RS30705 +0.9 1.4 LysR family transcriptional regulator compare
QEN71_RS28935 +0.9 5.1 flagellar protein FlgN compare
QEN71_RS24745 +0.9 1.3 hypothetical protein compare
QEN71_RS14455 +0.9 5.4 phosphoenolpyruvate mutase compare
QEN71_RS30910 +0.9 2.1 response regulator transcription factor compare
QEN71_RS27735 +0.9 5.7 SAM-dependent methyltransferase compare
QEN71_RS14845 +0.9 2.7 H-NS family nucleoid-associated regulatory protein compare
QEN71_RS06500 +0.9 1.0 pyruvate, water dikinase regulatory protein compare
QEN71_RS42220 +0.9 4.2 FAD-dependent monooxygenase compare
QEN71_RS12085 +0.9 1.3 EthD family reductase compare
QEN71_RS34380 +0.9 2.3 fumarylacetoacetate hydrolase family protein compare
QEN71_RS39780 +0.9 2.9 MFS transporter compare
QEN71_RS36840 +0.8 1.1 type III secretion system export apparatus subunit SctS compare
QEN71_RS39620 +0.8 1.9 proline/glycine betaine ABC transporter permease compare
QEN71_RS29130 +0.8 6.2 tetratricopeptide repeat protein compare
QEN71_RS29165 +0.8 6.0 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
QEN71_RS04725 +0.8 7.4 glycosyltransferase family 4 protein compare
QEN71_RS22090 +0.8 5.8 response regulator compare
QEN71_RS02850 +0.8 2.2 isochorismatase family protein compare
QEN71_RS35430 +0.8 2.5 nuclear transport factor 2 family protein compare
QEN71_RS44630 +0.8 1.5 transposase zinc-binding domain-containing protein compare
QEN71_RS34575 +0.8 2.8 type VI secretion system baseplate subunit TssE compare
QEN71_RS05655 +0.8 1.2 rhodanese-like domain-containing protein compare
QEN71_RS11250 +0.8 1.8 ABC transporter permease compare
QEN71_RS29145 +0.8 6.7 DegT/DnrJ/EryC1/StrS family aminotransferase compare
QEN71_RS20120 +0.8 6.5 flagellar transcriptional regulator FlhC compare
QEN71_RS41455 +0.8 3.2 isocitrate/isopropylmalate dehydrogenase family protein compare
QEN71_RS11845 +0.8 2.4 LLM class flavin-dependent oxidoreductase compare
QEN71_RS15285 +0.8 1.5 response regulator compare
QEN71_RS30635 +0.8 2.2 winged helix-turn-helix domain-containing protein compare
QEN71_RS37945 +0.8 3.0 glutathione binding-like protein compare
QEN71_RS29800 +0.8 2.2 ABC transporter permease compare
QEN71_RS42225 +0.8 4.6 electron transfer flavoprotein subunit alpha/FixB family protein compare
QEN71_RS41990 +0.8 1.8 IS6 family transposase compare
QEN71_RS32840 +0.8 2.7 'beta-ribofuranosylaminobenzene 5'-phosphate synthase' pseudo=_no_value transl_table=11 compare
QEN71_RS14750 +0.8 4.3 flippase-like domain-containing protein compare
QEN71_RS32340 +0.8 1.4 antibiotic biosynthesis monooxygenase compare
QEN71_RS41995 +0.8 2.9 hemerythrin domain-containing protein compare
QEN71_RS08280 +0.8 1.6 SDR family NAD(P)-dependent oxidoreductase compare
QEN71_RS38210 +0.8 2.3 flagellar hook protein FlgE compare
QEN71_RS10525 +0.8 1.2 amidohydrolase family protein compare
QEN71_RS05985 +0.8 2.6 tetratricopeptide repeat protein compare
QEN71_RS32570 +0.8 1.1 NIPSNAP family protein compare
QEN71_RS44155 +0.8 2.6 TniB family NTP-binding protein compare
QEN71_RS35025 +0.8 5.7 efflux RND transporter permease subunit compare
QEN71_RS10565 +0.8 6.1 ATP-binding protein compare
QEN71_RS24005 +0.8 1.0 putative toxin-antitoxin system toxin component, PIN family compare
QEN71_RS29125 +0.8 5.9 tetratricopeptide repeat protein compare
QEN71_RS09215 +0.8 1.8 response regulator compare
QEN71_RS44145 +0.8 1.9 hypothetical protein compare
QEN71_RS00115 +0.8 1.4 PaaI family thioesterase compare
QEN71_RS32125 +0.8 2.1 hypothetical protein compare
QEN71_RS29025 +0.8 6.3 flagellar motor stator protein MotA compare
QEN71_RS32350 +0.8 2.1 YbfB/YjiJ family MFS transporter compare
QEN71_RS05450 +0.7 1.4 outer membrane protein assembly factor BamC compare
QEN71_RS35095 +0.7 0.8 HU family DNA-binding protein compare
QEN71_RS18005 +0.7 3.2 LuxR family transcriptional regulator compare
QEN71_RS29155 +0.7 5.1 WbqC family protein compare
QEN71_RS29020 +0.7 5.3 flagellar motor protein MotB compare
QEN71_RS00650 +0.7 6.1 septal ring lytic transglycosylase RlpA family protein compare
QEN71_RS11865 +0.7 1.8 ABC transporter substrate-binding protein compare
QEN71_RS17910 +0.7 2.4 NAD(P)-dependent oxidoreductase compare
QEN71_RS28985 +0.7 6.0 chemotaxis response regulator protein-glutamate methylesterase compare
QEN71_RS36745 +0.7 2.0 hypothetical protein compare
QEN71_RS38265 +0.7 1.4 G/U mismatch-specific DNA glycosylase compare
QEN71_RS04720 +0.7 5.5 ABC transporter ATP-binding protein compare
QEN71_RS10740 +0.7 3.2 methylamine utilization protein compare
QEN71_RS22095 +0.7 6.4 ATP-binding protein compare
QEN71_RS02965 +0.7 3.0 DUF192 domain-containing protein compare
QEN71_RS42200 +0.7 1.3 ferredoxin III, nif-specific compare
QEN71_RS10310 +0.7 2.0 hypothetical protein compare
QEN71_RS33750 +0.7 0.9 FAD-dependent oxidoreductase compare
QEN71_RS14445 +0.7 4.5 2-aminoethylphosphonate aminotransferase compare
QEN71_RS03645 +0.7 2.0 ribonuclease PH compare
QEN71_RS30745 +0.7 1.3 hypothetical protein compare
QEN71_RS21655 +0.7 1.2 glycosyltransferase family 4 protein compare
QEN71_RS12905 +0.7 1.7 MarR family winged helix-turn-helix transcriptional regulator compare
QEN71_RS44370 +0.7 2.9 site-specific integrase compare
QEN71_RS07475 +0.7 0.7 hypothetical protein compare
QEN71_RS33745 +0.7 1.5 isochorismatase family protein compare
QEN71_RS04140 +0.7 6.1 lytic murein transglycosylase B compare
QEN71_RS14590 +0.7 1.5 hypothetical protein compare
QEN71_RS09455 +0.7 2.2 hypothetical protein compare
QEN71_RS00280 +0.7 5.6 AmpG family muropeptide MFS transporter compare
QEN71_RS29115 +0.7 2.6 class I SAM-dependent methyltransferase compare
QEN71_RS34105 +0.7 1.9 beta-ribofuranosylaminobenzene 5'-phosphate synthase compare
QEN71_RS14370 +0.7 2.4 vWA domain-containing protein compare
QEN71_RS43515 +0.7 2.2 hypothetical protein compare
QEN71_RS11180 +0.7 2.0 bacterioferritin compare
QEN71_RS29910 +0.7 1.9 hypothetical protein compare
QEN71_RS21470 +0.7 1.6 hypothetical protein compare
QEN71_RS27510 +0.7 1.7 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase PaaG compare
QEN71_RS18705 +0.7 1.6 electron transfer flavoprotein subunit alpha/FixB family protein compare
QEN71_RS14060 +0.7 1.4 sigma-70 family RNA polymerase sigma factor compare
QEN71_RS21220 +0.7 3.1 hypothetical protein compare
QEN71_RS18635 +0.7 0.7 hypothetical protein compare
QEN71_RS10230 +0.7 1.0 winged helix-turn-helix domain-containing protein compare
QEN71_RS39605 +0.7 2.8 LysR substrate-binding domain-containing protein compare
QEN71_RS02470 +0.7 5.8 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
QEN71_RS34150 +0.7 1.3 hypothetical protein compare
QEN71_RS33010 +0.7 1.9 hypothetical protein compare
QEN71_RS31135 +0.7 2.2 acyl-CoA dehydrogenase family protein compare
QEN71_RS30430 +0.7 2.2 nitronate monooxygenase compare
QEN71_RS23860 +0.7 2.0 cupredoxin domain-containing protein compare
QEN71_RS25070 +0.6 1.0 aspartate 1-decarboxylase compare
QEN71_RS38890 +0.6 1.1 LysR family transcriptional regulator compare
QEN71_RS32485 +0.6 1.1 aminotransferase class V-fold PLP-dependent enzyme compare
QEN71_RS42485 +0.6 1.4 nitrogen fixation protein NifZ compare
QEN71_RS10985 +0.6 2.8 MurR/RpiR family transcriptional regulator compare
QEN71_RS34780 +0.6 2.4 HAD domain-containing protein compare
QEN71_RS10195 +0.6 2.0 sugar ABC transporter permease compare
QEN71_RS34310 +0.6 1.9 hypothetical protein compare
QEN71_RS41105 +0.6 1.3 hypothetical protein compare
QEN71_RS17150 +0.6 1.2 H-NS histone family protein compare
QEN71_RS25010 +0.6 4.4 superoxide dismutase family protein compare
QEN71_RS43255 +0.6 1.6 branched-chain amino acid ABC transporter permease compare
QEN71_RS24600 +0.6 1.2 VOC family protein compare
QEN71_RS25870 +0.6 2.1 D-xylose ABC transporter substrate-binding protein compare
QEN71_RS02995 +0.6 1.1 cold shock domain-containing protein CspD compare
QEN71_RS14035 +0.6 1.9 LysR substrate-binding domain-containing protein compare
QEN71_RS18530 +0.6 2.9 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D,L-Malic Acid in Paraburkholderia sabiae LMG 24235

For carbon source D,L-Malic Acid across organisms