Experiment set1S538 for Alteromonas macleodii MIT1002

Compare to:

Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

200 most important genes:

  gene name fitness t score description  
MIT1002_03690 -7.3 -5.1 DnaK suppressor protein compare
MIT1002_00471 -7.2 -5.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
MIT1002_01027 -7.1 -4.9 Phosphoribosylformylglycinamidine synthase compare
MIT1002_00948 -7.1 -4.9 3-isopropylmalate dehydrogenase compare
MIT1002_00504 -7.1 -4.9 Acetolactate synthase isozyme 3 small subunit compare
MIT1002_01263 -7.1 -4.9 7-cyano-7-deazaguanine synthase compare
MIT1002_02524 -7.1 -6.9 Amidophosphoribosyltransferase compare
MIT1002_02636 -7.0 -4.9 Imidazole glycerol phosphate synthase subunit HisH compare
MIT1002_02429 -7.0 -6.9 Glucose-resistance amylase regulator compare
MIT1002_01763 -7.0 -3.2 Putative pterin-4-alpha-carbinolamine dehydratase compare
MIT1002_00949 -7.0 -4.8 2-isopropylmalate synthase compare
MIT1002_04045 -7.0 -4.8 Ketol-acid reductoisomerase compare
MIT1002_00946 -6.9 -4.8 3-isopropylmalate dehydratase small subunit 1 compare
MIT1002_03516 -6.9 -4.8 Acetyl-coenzyme A synthetase compare
MIT1002_01112 -6.9 -4.7 Homoserine O-succinyltransferase compare
MIT1002_02833 -6.9 -8.2 Malate synthase G compare
MIT1002_03139 -6.9 -4.7 Glutamate synthase [NADPH] large chain precursor compare
MIT1002_00469 -6.8 -4.7 Ornithine carbamoyltransferase compare
MIT1002_00189 -6.8 -4.7 Galactokinase compare
MIT1002_03179 -6.8 -4.7 Cystathionine beta-lyase PatB compare
MIT1002_02219 -6.8 -4.7 Phosphoribosylformylglycinamidine cyclo-ligase compare
MIT1002_02220 -6.8 -4.7 Phosphoribosylglycinamide formyltransferase compare
MIT1002_02831 -6.7 -4.6 Isocitrate lyase compare
MIT1002_00826 -6.7 -3.6 Ribosome hibernation promoting factor compare
MIT1002_01119 -6.7 -4.6 HTH-type transcriptional regulator GltC compare
MIT1002_00377 -6.7 -4.6 Branched-chain-amino-acid aminotransferase 2 compare
MIT1002_00522 -6.7 -4.6 N5-carboxyaminoimidazole ribonucleotide synthase compare
MIT1002_01035 -6.6 -4.6 anti-sigma28 factor FlgM compare
MIT1002_03086 -6.6 -4.6 Aspartokinase I/homoserine dehydrogenase I compare
MIT1002_03961 -6.6 -4.6 Phosphoribosylamine--glycine ligase compare
MIT1002_04040 -6.6 -4.5 L-threonine dehydratase biosynthetic IlvA compare
MIT1002_01266 -6.6 -4.5 Asparagine synthetase B [glutamine-hydrolyzing] compare
MIT1002_02349 -6.5 -6.4 2-hydroxypropyl-CoM lyase compare
MIT1002_02638 -6.5 -4.5 Imidazole glycerol phosphate synthase subunit HisF compare
MIT1002_02639 -6.5 -4.5 Phosphoribosyl-ATP pyrophosphatase compare
MIT1002_00947 -6.5 -4.5 3-isopropylmalate dehydratase large subunit compare
MIT1002_00467 -6.5 -4.5 Argininosuccinate lyase compare
MIT1002_02266 -6.5 -4.5 Methionine gamma-lyase compare
MIT1002_02993 -6.4 -4.4 D-3-phosphoglycerate dehydrogenase compare
MIT1002_02702 -6.4 -4.4 Serine hydroxymethyltransferase compare
MIT1002_02634 -6.4 -4.4 Histidinol-phosphate aminotransferase compare
MIT1002_03908 -6.4 -10.7 NAD(P) transhydrogenase subunit alpha compare
MIT1002_00468 -6.4 -4.4 Argininosuccinate synthase compare
MIT1002_02633 -6.4 -4.4 Histidinol dehydrogenase compare
MIT1002_00424 -6.4 -4.4 Solvent efflux pump srpABC operon corepressor compare
MIT1002_02811 -6.3 -6.2 preprotein translocase subunit SecD compare
MIT1002_03140 -6.3 -4.4 Glutamate synthase [NADPH] small chain compare
MIT1002_00485 -6.3 -4.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
MIT1002_02635 -6.3 -4.4 Histidine biosynthesis bifunctional protein HisB compare
MIT1002_00466 -6.3 -4.4 Amino-acid acetyltransferase compare
MIT1002_03785 -6.3 -13.3 Modulator of FtsH protease HflC compare
MIT1002_00809 -6.3 -4.4 Sensor protein QseC compare
MIT1002_02810 -6.3 -4.4 preprotein translocase subunit SecF compare
MIT1002_01979 -6.3 -4.3 Carnitinyl-CoA dehydratase compare
MIT1002_04044 -6.3 -7.4 HTH-type transcriptional regulator GltC compare
MIT1002_03786 -6.2 -12.7 Modulator of FtsH protease HflK compare
MIT1002_03539 -6.2 -2.9 Bifunctional protein BirA compare
MIT1002_02708 -6.2 -4.3 Phosphoserine phosphatase compare
MIT1002_01466 -6.2 -4.3 Carbamoyl-phosphate synthase small chain compare
MIT1002_03096 -6.2 -4.3 Isocitrate dehydrogenase kinase/phosphatase compare
MIT1002_04041 -6.1 -4.2 Dihydroxy-acid dehydratase compare
MIT1002_03015 -6.1 -6.0 aspartoacylase compare
MIT1002_01467 -6.1 -4.2 Carbamoyl-phosphate synthase large chain compare
MIT1002_04056 -6.1 -4.2 Glutamate 5-kinase compare
MIT1002_03885 -6.1 -4.2 NADH dehydrogenase compare
MIT1002_01736 -6.1 -4.2 Aminodeoxychorismate lyase compare
MIT1002_03084 -6.1 -4.2 Threonine synthase compare
MIT1002_02971 -6.1 -8.3 Glycine dehydrogenase [decarboxylating] compare
MIT1002_02348 -6.0 -11.6 hypothetical protein compare
MIT1002_00068 -6.0 -5.9 Chorismate--pyruvate lyase compare
MIT1002_00843 -6.0 -4.2 hypothetical protein compare
MIT1002_01885 -6.0 -4.2 Gamma-glutamyl phosphate reductase compare
MIT1002_00503 -6.0 -4.2 Acetolactate synthase isozyme 3 large subunit compare
MIT1002_01984 -6.0 -4.2 queuosine biosynthesis protein QueD compare
MIT1002_03130 -6.0 -4.1 2-methylcitrate synthase compare
MIT1002_00138 -5.9 -7.1 Histone deacetylase-like amidohydrolase compare
MIT1002_02637 -5.9 -4.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MIT1002_03062 -5.9 -4.1 Pyrroline-5-carboxylate reductase compare
MIT1002_02394 -5.9 -4.1 Glyceraldehyde-3-phosphate dehydrogenase compare
MIT1002_02287 -5.9 -8.1 Electron transfer flavoprotein small subunit compare
MIT1002_01264 -5.9 -4.1 7-carboxy-7-deazaguanine synthase compare
MIT1002_00160 -5.9 -4.1 Diaminopimelate decarboxylase compare
MIT1002_03323 -5.9 -7.0 Sensor histidine kinase LiaS compare
MIT1002_02972 -5.9 -4.1 Glycine cleavage system H protein compare
MIT1002_01429 -5.9 -4.1 Anthranilate synthase component II compare
MIT1002_02400 -5.9 -5.7 4-alpha-glucanotransferase compare
MIT1002_01428 -5.8 -4.0 Anthranilate synthase component II compare
MIT1002_02757 -5.8 -9.7 Lon protease compare
MIT1002_03907 -5.8 -11.8 NAD(P) transhydrogenase subunit beta compare
MIT1002_03085 -5.7 -4.0 Homoserine kinase compare
MIT1002_00351 -5.7 -13.9 Degradation activator compare
MIT1002_00437 -5.7 -4.0 Succinylornithine transaminase/acetylornithine aminotransferase compare
MIT1002_03321 -5.7 -10.9 Aldehyde dehydrogenase B compare
MIT1002_02404 -5.7 -3.9 Glucokinase compare
MIT1002_04134 -5.6 -3.9 Sporulation initiation inhibitor protein soj compare
MIT1002_02973 -5.6 -6.7 Aminomethyltransferase compare
MIT1002_03331 -5.6 -6.7 D-lactate dehydrogenase compare
MIT1002_02832 -5.6 -3.9 Nodulation protein D 2 compare
MIT1002_00188 -5.6 -9.3 Galactose-1-phosphate uridylyltransferase compare
MIT1002_01777 -5.6 -3.8 chromosome segregation protein SMC compare
MIT1002_01295 -5.5 -3.8 Inner membrane protein YpjD compare
MIT1002_00988 -5.5 -3.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
MIT1002_03909 -5.5 -10.9 NAD(P) transhydrogenase subunit alpha part 1 compare
MIT1002_02012 -5.5 -12.8 Pyruvate dehydrogenase E1 component subunit alpha compare
MIT1002_01316 -5.4 -3.8 P-protein compare
MIT1002_02013 -5.4 -11.0 2-oxoisovalerate dehydrogenase subunit beta compare
MIT1002_01430 -5.4 -3.7 Anthranilate synthase component 1 compare
MIT1002_01544 -5.4 -3.7 D-alanyl-D-alanine carboxypeptidase compare
MIT1002_00872 -5.3 -8.9 Polyphosphate kinase compare
MIT1002_02568 -5.3 -4.6 Tetracycline repressor protein class A from transposon 1721 compare
MIT1002_01129 -5.3 -3.2 Carbon storage regulator compare
MIT1002_01553 -5.2 -15.3 4-hydroxyphenylpyruvate dioxygenase compare
MIT1002_02008 -5.2 -13.7 Para-aminobenzoate synthase component 1 compare
MIT1002_02632 -5.2 -3.6 ATP phosphoribosyltransferase compare
MIT1002_00970 -5.1 -7.8 UDP-glucose 4-epimerase compare
MIT1002_03698 -5.1 -6.5 tRNA (guanine-N(7)-)-methyltransferase compare
MIT1002_02991 -5.0 -3.5 putative 5-formyltetrahydrofolate cyclo-ligase compare
MIT1002_00076 -5.0 -3.3 transcriptional regulator, y4mF family compare
MIT1002_02286 -5.0 -9.0 Electron transfer flavoprotein large subunit compare
MIT1002_02681 -4.9 -10.0 Transcriptional activator ChrR compare
MIT1002_03616 -4.9 -3.4 NAD(P)H-flavin reductase compare
MIT1002_02288 -4.9 -34.7 Electron transfer flavoprotein-ubiquinone oxidoreductase compare
MIT1002_00883 -4.9 -3.4 putative transmembrane transcriptional regulator (anti-sigma factor) compare
MIT1002_01001 -4.9 -7.5 PII uridylyl-transferase compare
MIT1002_02760 -4.9 -3.4 ATP-dependent Clp protease proteolytic subunit precursor compare
MIT1002_03843 -4.8 -5.8 Galactose operon repressor compare
MIT1002_00423 -4.8 -3.3 Aspartate carbamoyltransferase catalytic chain compare
MIT1002_00470 -4.8 -7.9 Acetylglutamate kinase compare
MIT1002_01427 -4.8 -3.2 Tryptophan biosynthesis protein TrpCF compare
MIT1002_00521 -4.8 -3.3 N5-carboxyaminoimidazole ribonucleotide mutase compare
MIT1002_01981 -4.7 -8.5 Inner membrane protein YejM compare
MIT1002_02441 -4.7 -4.6 Helix-turn-helix domain protein compare
MIT1002_00827 -4.7 -3.0 RNA polymerase sigma-54 factor 2 compare
MIT1002_03317 -4.7 -4.3 Transcriptional regulatory protein DevR (DosR) compare
MIT1002_04092 -4.7 -3.2 putative type I restriction enzymeP M protein compare
MIT1002_02759 -4.6 -3.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MIT1002_02035 -4.6 -2.2 Dihydroorotate dehydrogenase (quinone) compare
MIT1002_02184 -4.6 -2.5 Orotidine 5'-phosphate decarboxylase compare
MIT1002_00161 -4.6 -3.9 putative small periplasmic lipoprotein compare
MIT1002_03913 -4.6 -14.9 hypothetical protein compare
MIT1002_03507 -4.5 -15.2 Acetate transporter ActP compare
MIT1002_00439 -4.5 -13.0 Para-aminobenzoate synthase glutamine amidotransferase component II compare
MIT1002_01815 -4.5 -8.6 Phosphoenolpyruvate synthase regulatory protein compare
MIT1002_02014 -4.5 -14.5 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex compare
MIT1002_01102 -4.5 -6.8 Flagellum site-determining protein YlxH compare
MIT1002_04135 -4.4 -3.1 ParB/RepB/Spo0J family partition protein compare
MIT1002_02812 -4.4 -3.1 preprotein translocase subunit YajC compare
MIT1002_01292 -4.4 -6.7 Phosphohistidine phosphatase SixA compare
MIT1002_02306 -4.4 -7.4 Glutamate-pyruvate aminotransferase AlaA compare
MIT1002_02386 -4.4 -1.2 Small integral membrane protein compare
MIT1002_02715 -4.4 -3.0 Elongation factor 4 compare
MIT1002_03481 -4.3 -2.9 hypothetical protein compare
MIT1002_01345 -4.3 -2.4 tRNA-Ser compare
MIT1002_03921 -4.3 -8.3 fec operon regulator FecR compare
MIT1002_03109 -4.3 -5.1 Saccharopine dehydrogenase compare
MIT1002_03488 -4.3 -2.9 Na(+)-translocating NADH-quinone reductase subunit A compare
MIT1002_00486 -4.3 -1.2 Protein-export protein SecB compare
MIT1002_00074 -4.2 -2.8 tRNA-Arg compare
MIT1002_00109 -4.2 -12.5 Putative reactive intermediate deaminase TdcF compare
MIT1002_03761 -4.2 -5.0 N-carbamoyl-D-amino acid hydrolase compare
MIT1002_01217 -4.2 -5.7 2-dehydropantoate 2-reductase compare
MIT1002_00884 -4.2 -2.5 hypothetical protein compare
MIT1002_02807 -4.2 -2.9 Inositol-1-monophosphatase compare
MIT1002_02653 -4.2 -1.6 Nucleoid-associated protein YbaB compare
MIT1002_02133 -4.1 -2.9 putative integral membrane protein linked to a cation pump compare
MIT1002_00012 -4.1 -2.9 Cytochrome c4 precursor compare
MIT1002_02136 -4.1 -2.8 hypothetical protein compare
MIT1002_01638 -4.1 -2.8 Integration host factor subunit alpha compare
MIT1002_02718 -4.1 -3.0 Sigma-E factor negative regulatory protein compare
MIT1002_02188 -4.1 -2.8 Integration host factor subunit beta compare
MIT1002_00108 -4.1 -7.8 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MIT1002_03965 -4.0 -13.8 Phosphoribulokinase, plasmid compare
MIT1002_03186 -4.0 -7.6 Nitrogen regulation protein NR(I) compare
MIT1002_03137 -3.9 -2.7 Aerobic respiration control sensor protein ArcB compare
MIT1002_00100 -3.9 -12.1 Putative uroporphyrinogen-III C-methyltransferase compare
MIT1002_02573 -3.9 -9.1 hypothetical protein compare
MIT1002_01218 -3.9 -1.1 hypothetical protein compare
MIT1002_01925 -3.9 -1.8 hypothetical protein compare
MIT1002_02025 -3.8 -6.4 Tail-specific protease precursor compare
MIT1002_00814 -3.8 -2.6 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
MIT1002_03484 -3.8 -2.1 Na(+)-translocating NADH-quinone reductase subunit E compare
MIT1002_01192 -3.8 -4.5 Peptide chain release factor 3 compare
MIT1002_03978 -3.8 -2.6 General secretion pathway protein F compare
MIT1002_01340 -3.8 -8.8 tol-pal system protein YbgF compare
MIT1002_02128 -3.8 -3.3 hypothetical protein compare
MIT1002_03089 -3.8 -10.1 S-(hydroxymethyl)glutathione dehydrogenase compare
MIT1002_04103 -3.7 -10.4 Galactose operon repressor compare
MIT1002_03979 -3.7 -1.7 Pullulanase secretion protein PulG compare
MIT1002_01457 -3.7 -1.4 Heat shock protein 70 compare
MIT1002_00113 -3.7 -6.4 Putative peroxiredoxin compare
MIT1002_00815 -3.7 -2.5 Cytochrome b/c1 compare
MIT1002_03977 -3.7 -2.5 Type II traffic warden ATPase compare
MIT1002_03185 -3.7 -10.1 Nitrogen regulation protein NR(II) compare
MIT1002_00436 -3.7 -4.8 Arginine N-succinyltransferase subunit beta compare
MIT1002_03055 -3.6 -2.5 Glutathione synthetase compare
MIT1002_02129 -3.6 -5.5 hypothetical protein compare
MIT1002_03828 -3.6 -15.1 Taurine catabolism dioxygenase TauD, TfdA family compare
MIT1002_00877 -3.6 -5.4 Repressor protein PhoU compare
MIT1002_03485 -3.6 -2.4 Na(+)-translocating NADH-quinone reductase subunit D compare
MIT1002_01420 -3.6 -8.7 Virulence sensor histidine kinase PhoQ compare


Specific Phenotypes

For 2 genes in this experiment

For mixed community Mixed culture; Prochlorococcus marinus str. MIT9313 10:1 starting OD to HP15 in Alteromonas macleodii MIT1002

For mixed community Mixed culture; Prochlorococcus marinus str. MIT9313 10:1 starting OD to HP15 across organisms