Experiment set1S538 for Alteromonas macleodii MIT1002

Compare to:

Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 5

200 most detrimental genes:

  gene name fitness t score description  
MIT1002_00187 +4.5 34.8 Aldose 1-epimerase precursor compare
MIT1002_00186 +4.1 22.3 Mgl repressor and galactose ultrainduction factor compare
MIT1002_03788 +3.8 11.8 Host factor-I protein compare
MIT1002_01238 +3.1 11.3 fec operon regulator FecR compare
MIT1002_02588 +2.5 13.9 Long-chain-fatty-acid--CoA ligase compare
MIT1002_00137 +1.7 11.4 Propionyl-CoA:succinate CoA transferase compare
MIT1002_02485 +1.7 2.5 tRNA-Pro compare
MIT1002_00835 +1.6 5.6 putative phospholipid ABC transporter permease protein MlaE compare
MIT1002_02684 +1.6 9.3 SnoaL-like domain protein compare
MIT1002_01291 +1.5 8.3 Protease 3 precursor compare
MIT1002_02000 +1.4 8.1 putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B compare
MIT1002_01805 +1.4 8.5 NADH oxidase compare
MIT1002_01853 +1.4 1.4 Ribosomal silencing factor RsfS compare
MIT1002_00206 +1.4 2.9 hypothetical protein compare
MIT1002_00237 +1.3 3.9 tRNA (guanine-N(7)-)-methyltransferase compare
MIT1002_00184 +1.2 2.5 hypothetical protein compare
MIT1002_03910 +1.2 9.5 enterobactin receptor protein compare
MIT1002_03347 +1.2 1.6 Methyl-accepting chemotaxis protein 3 compare
MIT1002_02058 +1.2 2.1 Mercuric resistance protein MerC compare
MIT1002_03919 +1.2 9.3 Ferripyoverdine receptor precursor compare
MIT1002_03912 +1.2 6.7 SapC compare
MIT1002_00334 +1.2 2.7 hypothetical protein compare
MIT1002_03920 +1.2 5.1 putative RNA polymerase sigma factor FecI compare
MIT1002_01319 +1.2 2.2 Anti-anti-sigma-B factor compare
MIT1002_00834 +1.1 2.1 putative ABC transporter ATP-binding protein compare
MIT1002_00230 +1.1 5.2 peptidase PmbA compare
MIT1002_00227 +1.1 7.3 protease TldD compare
MIT1002_00411 +1.1 3.9 hypothetical protein compare
MIT1002_02467 +1.1 1.8 hypothetical protein compare
MIT1002_03911 +1.1 6.7 Flavin-dependent tryptophan halogenase RebH compare
MIT1002_02213 +1.0 1.3 Arsenate reductase compare
MIT1002_04095 +1.0 2.5 hypothetical protein compare
MIT1002_03280 +1.0 4.2 cystine transporter subunit compare
MIT1002_03320 +1.0 7.1 Putative electron transport protein YccM compare
MIT1002_00234 +1.0 6.3 Sensor protein ZraS compare
MIT1002_00205 +1.0 3.4 General secretion pathway, M protein compare
MIT1002_03697 +1.0 6.2 putative membrane protein YjcC compare
MIT1002_01526 +1.0 0.8 putative transposase OrfB compare
MIT1002_04085 +1.0 1.9 hypothetical protein compare
MIT1002_01676 +1.0 0.8 Exodeoxyribonuclease I compare
MIT1002_00887 +1.0 1.2 hypothetical protein compare
MIT1002_04013 +0.9 6.4 Papain family cysteine protease compare
MIT1002_01650 +0.9 1.0 hypothetical protein compare
MIT1002_02612 +0.9 1.0 hypothetical protein compare
MIT1002_00463 +0.9 1.0 hypothetical protein compare
MIT1002_00051 +0.9 3.0 hypothetical protein compare
MIT1002_00210 +0.9 6.6 Type II traffic warden ATPase compare
MIT1002_04161 +0.9 1.8 hypothetical protein compare
MIT1002_02645 +0.9 2.9 hypothetical protein compare
MIT1002_01996 +0.9 1.8 EF hand compare
MIT1002_03230 +0.9 1.4 hypothetical protein compare
MIT1002_01154 +0.9 4.3 Tryptophan 2,3-dioxygenase compare
MIT1002_00969 +0.9 4.3 putative phospholipid-binding lipoprotein MlaA precursor compare
MIT1002_02396 +0.9 3.2 Peptide methionine sulfoxide reductase MsrB compare
MIT1002_02716 +0.8 2.8 Sigma-E factor regulatory protein RseC compare
MIT1002_00997 +0.8 0.9 hypothetical protein compare
MIT1002_02138 +0.8 2.7 Universal stress protein E compare
MIT1002_03662 +0.8 1.1 hypothetical protein compare
MIT1002_01023 +0.8 1.2 hypothetical protein compare
MIT1002_00190 +0.8 5.3 Na(+)/glucose symporter compare
MIT1002_02198 +0.8 2.6 putative oxidoreductase compare
MIT1002_00558 +0.8 1.5 hypothetical protein compare
MIT1002_00838 +0.8 1.2 Putative anti-sigma factor antagonist compare
MIT1002_01131 +0.8 0.7 tRNA-Arg compare
MIT1002_01892 +0.8 2.6 hypothetical protein compare
MIT1002_01220 +0.8 2.8 Hpt domain protein compare
MIT1002_02094 +0.8 2.4 Metapyrocatechase compare
MIT1002_01597 +0.8 4.0 putative DNA-binding transcriptional regulator compare
MIT1002_02806 +0.8 4.5 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ compare
MIT1002_01031 +0.8 2.4 tRNA-Arg compare
MIT1002_01625 +0.8 5.4 Teichuronic acid biosynthesis protein TuaB compare
MIT1002_02626 +0.8 3.5 hypothetical protein compare
MIT1002_03282 +0.8 4.9 PQQ-dependent catabolism-associated beta-propeller protein compare
MIT1002_02761 +0.7 0.7 Trigger factor compare
MIT1002_00837 +0.7 1.7 putative phospholipid-binding protein MlaC precursor compare
MIT1002_03117 +0.7 2.8 DnaA initiator-associating protein DiaA compare
MIT1002_03893 +0.7 4.4 Autoinducer 2 sensor kinase/phosphatase LuxQ compare
MIT1002_02007 +0.7 1.6 putative NUDIX hydrolase compare
MIT1002_01761 +0.7 1.8 Small-conductance mechanosensitive channel compare
MIT1002_04063 +0.7 2.9 hypothetical protein compare
MIT1002_00452 +0.7 1.5 Fimbrial assembly protein (PilN) compare
MIT1002_01265 +0.7 4.5 hypothetical protein compare
MIT1002_01207 +0.7 0.9 hypothetical protein compare
MIT1002_03284 +0.7 2.0 Daunorubicin/doxorubicin resistance ABC transporter permease protein DrrB compare
MIT1002_03687 +0.7 1.3 hypothetical protein compare
MIT1002_00015 +0.7 2.6 Sigma cross-reacting protein 27A compare
MIT1002_00954 +0.7 2.7 Nicotinamide-nucleotide amidohydrolase PncC compare
MIT1002_00211 +0.7 3.5 General secretion pathway protein F compare
MIT1002_00053 +0.7 4.2 hypothetical protein compare
MIT1002_03060 +0.7 3.7 Twitching mobility protein compare
MIT1002_02840 +0.7 2.3 putative periplasmic serine endoprotease DegP-like precursor compare
MIT1002_00203 +0.7 4.3 hypothetical protein compare
MIT1002_00625 +0.7 3.6 RNA polymerase sigma factor RpoS compare
MIT1002_01716 +0.7 1.3 hypothetical protein compare
MIT1002_03950 +0.7 1.0 High-potential iron-sulfur protein isozyme 2 compare
MIT1002_03620 +0.7 2.6 hypothetical protein compare
MIT1002_01929 +0.7 0.5 Trm112p-like protein compare
MIT1002_00982 +0.7 2.7 ComE operon protein 1 compare
MIT1002_01231 +0.6 3.6 SpoVR family protein compare
MIT1002_02493 +0.6 2.1 Methyltransferase domain protein compare
MIT1002_02478 +0.6 2.9 hypothetical protein compare
MIT1002_02907 +0.6 2.6 META domain protein compare
MIT1002_03162 +0.6 0.4 Iron-sulfur cluster insertion protein ErpA compare
MIT1002_02231 +0.6 3.8 Phosphoglycolate phosphatase compare
MIT1002_04182 +0.6 3.2 hypothetical protein compare
MIT1002_01901 +0.6 2.2 topology modulation protein compare
MIT1002_00824 +0.6 3.7 glmZ(sRNA)-inactivating NTPase compare
MIT1002_01085 +0.6 3.8 Flagellar M-ring protein compare
MIT1002_00208 +0.6 3.9 putative secretion ATPase, PEP-CTERM locus subfamily compare
MIT1002_00836 +0.6 1.6 putative phospholipid ABC transporter-binding protein MlaD compare
MIT1002_00218 +0.6 2.3 hypothetical protein compare
MIT1002_01089 +0.6 2.3 flagellar biosynthesis chaperone compare
MIT1002_04223 +0.6 0.6 Transcriptional regulatory protein YycF compare
MIT1002_01255 +0.6 1.6 Nitrogen fixation protein RnfC compare
MIT1002_03756 +0.6 4.1 Amylosucrase compare
MIT1002_03940 +0.6 1.2 Glycyl-glycine endopeptidase ALE-1 precursor compare
MIT1002_02913 +0.6 1.7 Redox-sensitive transcriptional activator SoxR compare
MIT1002_00869 +0.6 1.2 hypothetical protein compare
MIT1002_01704 +0.6 1.9 N-succinylarginine dihydrolase compare
MIT1002_01260 +0.6 3.0 Staphylococcal virulence regulator protein A compare
MIT1002_02802 +0.6 1.4 HTH-type transcriptional regulator IscR compare
MIT1002_02279 +0.6 2.9 hypothetical protein compare
MIT1002_00699 +0.6 1.6 Nitrite reductase [NAD(P)H] small subunit compare
MIT1002_04159 +0.6 1.4 hypothetical protein compare
MIT1002_01810 +0.6 3.8 High-affinity choline transport protein compare
MIT1002_04068 +0.6 1.2 hypothetical protein compare
MIT1002_02080 +0.6 2.3 Prephenate dehydratase compare
MIT1002_01372 +0.6 2.0 hypothetical protein compare
MIT1002_00207 +0.5 3.3 Pectic enzymes secretion protein OutD compare
MIT1002_01894 +0.5 1.6 hypothetical protein compare
MIT1002_02001 +0.5 2.6 putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A compare
MIT1002_00379 +0.5 1.7 hypothetical protein compare
MIT1002_02709 +0.5 2.9 putative membrane protein affecting hemolysin expression compare
MIT1002_03443 +0.5 1.5 hypothetical protein compare
MIT1002_00209 +0.5 3.0 putative PEP-CTERM system TPR-repeat lipoprotein compare
MIT1002_01076 +0.5 2.4 pseudaminic acid biosynthesis-associated protein PseG compare
MIT1002_01780 +0.5 1.6 putative proline hydroxylase compare
MIT1002_03076 +0.5 1.3 polyadenylate binding protein, human types 1, 2, 3, 4 family compare
MIT1002_01963 +0.5 2.4 Ribose operon repressor compare
MIT1002_00283 +0.5 1.8 Mercuric resistance operon regulatory protein compare
MIT1002_02984 +0.5 3.0 Xaa-Pro aminopeptidase compare
MIT1002_01334 +0.5 2.0 Acyl-CoA thioester hydrolase YbgC compare
MIT1002_01226 +0.5 1.3 hypothetical protein compare
MIT1002_03138 +0.5 2.7 N-acetylmuramoyl-L-alanine amidase AmiD precursor compare
MIT1002_01664 +0.5 1.3 Transposase compare
MIT1002_01244 +0.5 2.3 Glycerophosphoryl diester phosphodiesterase precursor compare
MIT1002_01188 +0.5 2.2 Salmolysin compare
MIT1002_00214 +0.5 2.4 Serogroup C1 compare
MIT1002_01325 +0.5 2.2 hypothetical protein compare
MIT1002_01086 +0.5 2.5 Flagellar motor switch protein FliG compare
MIT1002_03667 +0.5 2.6 hypothetical protein compare
MIT1002_03986 +0.5 1.8 Pectic enzymes secretion protein OutN compare
MIT1002_00217 +0.5 2.6 hypothetical protein compare
MIT1002_00031 +0.5 3.0 UDP-N-acetylglucosamine 2-epimerase compare
MIT1002_01087 +0.5 2.3 Flagellar assembly protein FliH compare
MIT1002_01081 +0.5 3.2 Nitrogen assimilation regulatory protein compare
MIT1002_01737 +0.5 3.3 putative aminodeoxychorismate lyase compare
MIT1002_03283 +0.5 2.7 Glutamine transport ATP-binding protein GlnQ compare
MIT1002_00697 +0.5 1.9 Bicarbonate transporter BicA compare
MIT1002_01368 +0.5 2.0 Paraquat-inducible protein B compare
MIT1002_03215 +0.5 0.9 putative ATP-binding protein involved in virulence compare
MIT1002_02877 +0.5 1.4 GIY-YIG nuclease superfamily protein compare
MIT1002_01232 +0.5 2.4 hypothetical protein compare
MIT1002_02669 +0.5 2.6 hypothetical protein compare
MIT1002_04183 +0.5 0.8 hypothetical protein compare
MIT1002_00985 +0.5 1.3 hypothetical protein compare
MIT1002_03262 +0.5 1.2 Stress responsive A/B Barrel Domain protein compare
MIT1002_00402 +0.5 1.6 Bacterial inner membrane protein compare
MIT1002_01088 +0.5 2.8 Flagellum-specific ATP synthase compare
MIT1002_03409 +0.5 1.1 hypothetical protein compare
MIT1002_01590 +0.5 1.3 hypothetical protein compare
MIT1002_01480 +0.5 3.0 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB compare
MIT1002_01046 +0.5 1.5 Distal rod protein compare
MIT1002_03894 +0.5 2.3 ABC-type uncharacterized transport system, periplasmic component compare
MIT1002_00121 +0.5 1.1 hypothetical protein compare
MIT1002_02215 +0.5 1.2 putative membrane protein compare
MIT1002_00052 +0.5 2.0 hypothetical protein compare
MIT1002_01098 +0.5 2.4 Flagellar biosynthetic protein FlhB compare
MIT1002_02624 +0.5 2.1 Sulfite exporter TauE/SafE compare
MIT1002_00204 +0.5 2.2 Fimbrial assembly protein (PilN) compare
MIT1002_02224 +0.5 2.8 Protease production enhancer protein compare
MIT1002_01301 +0.5 1.6 Tellurite resistance protein compare
MIT1002_01095 +0.5 2.2 Flagellar biosynthetic protein FliP precursor compare
MIT1002_00501 +0.5 2.0 hypothetical protein compare
MIT1002_01038 +0.5 1.7 Chemotaxis protein methyltransferase compare
MIT1002_03166 +0.5 2.0 Septum site-determining protein MinC compare
MIT1002_00671 +0.5 2.0 ADP-ribose pyrophosphatase compare
MIT1002_00505 +0.5 2.9 hypothetical protein compare
MIT1002_01262 +0.5 1.5 DNA-binding transcriptional activator XapR compare
MIT1002_02372 +0.5 0.5 Biofilm growth-associated repressor compare
MIT1002_01233 +0.5 2.9 PrkA family serine protein kinase compare
MIT1002_04154 +0.4 1.9 cytochrome c oxidase assembly factor CtaG compare
MIT1002_01100 +0.4 2.5 Flagellar biosynthesis protein FlhA compare
MIT1002_02516 +0.4 0.4 Invasion protein B, involved in pathogenesis compare
MIT1002_03454 +0.4 1.9 hypothetical protein compare
MIT1002_01611 +0.4 1.3 polysaccharide export protein Wza compare
MIT1002_00674 +0.4 1.7 esterase YqiA compare
MIT1002_03724 +0.4 1.3 PKHD-type hydroxylase compare
MIT1002_01931 +0.4 1.8 C signal compare
MIT1002_02088 +0.4 1.7 Phenol hydroxylase P1 protein compare


Specific Phenotypes

For 2 genes in this experiment

For mixed community Mixed culture; Prochlorococcus marinus str. MIT9313 10:1 starting OD to HP15 in Alteromonas macleodii MIT1002

For mixed community Mixed culture; Prochlorococcus marinus str. MIT9313 10:1 starting OD to HP15 across organisms