Experiment set1S536 for Paraburkholderia sabiae LMG 24235

Compare to:

Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
QEN71_RS02425 -4.9 -3.4 phosphoglycerate kinase compare
QEN71_RS17850 -4.8 -8.0 homoserine kinase compare
QEN71_RS28005 -4.7 -6.4 glutamate synthase subunit beta compare
QEN71_RS27825 -4.5 -7.3 phosphoribosyl-ATP diphosphatase compare
QEN71_RS28035 -4.2 -15.7 3-dehydroquinate synthase compare
QEN71_RS24165 -4.1 -14.4 triose-phosphate isomerase compare
QEN71_RS02440 -4.1 -3.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
QEN71_RS28715 -3.9 -8.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
QEN71_RS27005 -3.9 -6.3 type I glyceraldehyde-3-phosphate dehydrogenase compare
QEN71_RS26600 -3.9 -8.5 pyrroline-5-carboxylate reductase compare
QEN71_RS24225 -3.9 -20.6 acetolactate synthase 3 catalytic subunit compare
QEN71_RS27855 -3.9 -10.2 imidazoleglycerol-phosphate dehydratase HisB compare
QEN71_RS17615 -3.9 -4.6 3-isopropylmalate dehydratase small subunit compare
QEN71_RS01460 -3.8 -14.1 protein-export chaperone SecB compare
QEN71_RS24970 -3.8 -8.1 argininosuccinate lyase compare
QEN71_RS06040 -3.8 -20.3 potassium transporter Kup compare
QEN71_RS22400 -3.7 -13.4 threonine synthase compare
QEN71_RS28080 -3.7 -15.2 diaminopimelate decarboxylase compare
QEN71_RS01990 -3.7 -24.7 FAD/FMN-binding oxidoreductase compare
QEN71_RS27560 -3.7 -13.1 anthranilate phosphoribosyltransferase compare
QEN71_RS00290 -3.7 -18.7 homoserine O-acetyltransferase compare
QEN71_RS01445 -3.7 -7.6 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
QEN71_RS17645 -3.7 -10.5 tryptophan synthase subunit beta compare
QEN71_RS27865 -3.6 -16.5 histidinol dehydrogenase compare
QEN71_RS17680 -3.6 -19.6 amidophosphoribosyltransferase compare
QEN71_RS28010 -3.6 -26.2 glutamate synthase-related protein compare
QEN71_RS06025 -3.6 -16.5 ATP phosphoribosyltransferase regulatory subunit compare
QEN71_RS21920 -3.5 -21.2 phosphoribosylformylglycinamidine synthase compare
QEN71_RS17655 -3.5 -15.9 tryptophan synthase subunit alpha compare
QEN71_RS26235 -3.5 -6.3 serine hydroxymethyltransferase compare
QEN71_RS24400 -3.5 -11.0 phosphoribosylamine--glycine ligase compare
QEN71_RS02785 -3.5 -18.1 ornithine carbamoyltransferase compare
QEN71_RS27845 -3.5 -17.0 imidazole glycerol phosphate synthase subunit HisH compare
QEN71_RS01465 -3.5 -21.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
QEN71_RS27870 -3.5 -18.0 ATP phosphoribosyltransferase compare
QEN71_RS04710 -3.4 -15.0 trehalose-phosphatase compare
QEN71_RS04070 -3.4 -14.0 prephenate dehydratase compare
QEN71_RS06505 -3.4 -9.0 phosphoenolpyruvate synthase compare
QEN71_RS27840 -3.4 -13.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
QEN71_RS27550 -3.4 -21.5 anthranilate synthase component I compare
QEN71_RS17640 -3.4 -13.0 phosphoribosylanthranilate isomerase compare
QEN71_RS17620 -3.4 -7.1 3-isopropylmalate dehydrogenase compare
QEN71_RS04085 -3.4 -11.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
QEN71_RS01745 -3.4 -6.4 PTS sugar transporter subunit IIA compare
QEN71_RS27835 -3.3 -12.5 imidazole glycerol phosphate synthase subunit HisF compare
QEN71_RS27830 -3.3 -4.5 phosphoribosyl-AMP cyclohydrolase compare
QEN71_RS22160 -3.3 -15.3 phosphoserine phosphatase SerB compare
QEN71_RS22405 -3.3 -14.8 homoserine dehydrogenase compare
QEN71_RS04065 -3.2 -16.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
QEN71_RS25700 -3.2 -3.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
QEN71_RS06190 -3.2 -2.2 C40 family peptidase compare
QEN71_RS26460 -3.2 -10.9 HAD family hydrolase compare
QEN71_RS01985 -3.2 -15.7 threonine ammonia-lyase, biosynthetic compare
QEN71_RS09235 -3.2 -13.5 argininosuccinate synthase compare
QEN71_RS26780 -3.2 -3.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
QEN71_RS05215 -3.1 -14.1 chorismate synthase compare
QEN71_RS21935 -3.1 -6.3 glucose-6-phosphate isomerase compare
QEN71_RS24215 -3.1 -12.6 ketol-acid reductoisomerase compare
QEN71_RS25715 -3.0 -4.6 acetyltransferase compare
QEN71_RS24955 -3.0 -19.4 phosphoenolpyruvate carboxylase compare
QEN71_RS26445 -3.0 -15.4 phosphoribosylformylglycinamidine cyclo-ligase compare
QEN71_RS27565 -3.0 -9.1 indole-3-glycerol phosphate synthase TrpC compare
QEN71_RS24945 -2.9 -6.5 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
QEN71_RS17600 -2.9 -19.2 citrate synthase compare
QEN71_RS17605 -2.8 -9.2 3-isopropylmalate dehydratase large subunit compare
QEN71_RS29480 -2.8 -18.0 cation:proton antiporter compare
QEN71_RS25255 -2.8 -11.6 nitrite/sulfite reductase compare
QEN71_RS25235 -2.8 -10.8 sulfate adenylyltransferase subunit 1 compare
QEN71_RS25240 -2.8 -8.9 sulfate adenylyltransferase subunit CysD compare
QEN71_RS25710 -2.8 -6.4 GNAT family N-acetyltransferase compare
QEN71_RS25250 -2.8 -4.9 DUF934 domain-containing protein compare
QEN71_RS28040 -2.8 -7.0 shikimate kinase compare
QEN71_RS29475 -2.7 -15.8 YbdK family carboxylate-amine ligase compare
QEN71_RS25725 -2.7 -11.9 ABC transporter ATP-binding protein compare
QEN71_RS25245 -2.7 -4.7 phosphoadenylyl-sulfate reductase compare
QEN71_RS06310 -2.6 -1.8 lysophospholipid transporter LplT compare
QEN71_RS27785 -2.6 -2.5 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
QEN71_RS27895 -2.6 -2.5 STAS domain-containing protein compare
QEN71_RS25420 -2.6 -7.2 oligosaccharide flippase family protein compare
QEN71_RS22330 -2.6 -3.0 glycosyltransferase family 39 protein compare
QEN71_RS25690 -2.6 -4.2 glycosyltransferase family 4 protein compare
QEN71_RS25630 -2.5 -5.0 NAD-dependent epimerase/dehydratase family protein compare
QEN71_RS25260 -2.5 -13.0 CysB family HTH-type transcriptional regulator compare
QEN71_RS27270 -2.4 -10.4 glutamate 5-kinase compare
QEN71_RS41540 -2.4 -2.9 aminotransferase class V-fold PLP-dependent enzyme compare
QEN71_RS25720 -2.3 -5.7 SAM-dependent methyltransferase compare
QEN71_RS02450 -2.3 -3.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
QEN71_RS21975 -2.3 -8.2 endopeptidase La compare
QEN71_RS25705 -2.3 -3.0 FdtA/QdtA family cupin domain-containing protein compare
QEN71_RS37555 -2.2 -2.8 response regulator compare
QEN71_RS04575 -2.2 -6.6 RNA polymerase sigma factor RpoE compare
QEN71_RS27130 -2.2 -8.2 shikimate dehydrogenase compare
QEN71_RS01420 -2.2 -5.4 PTS sugar transporter subunit IIB compare
QEN71_RS21425 -2.2 -7.9 HAMP domain-containing sensor histidine kinase compare
QEN71_RS25730 -2.2 -6.2 ABC transporter permease compare
QEN71_RS04080 -2.1 -6.7 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
QEN71_RS25695 -2.1 -8.3 glycosyltransferase family 4 protein compare
QEN71_RS27555 -2.1 -4.4 aminodeoxychorismate/anthranilate synthase component II compare
QEN71_RS08930 -2.1 -1.4 hypothetical protein compare
QEN71_RS26545 -2.1 -15.4 AsmA-like C-terminal region-containing protein compare
QEN71_RS38720 -2.1 -1.7 DUF1987 domain-containing protein compare
QEN71_RS26480 -2.0 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
QEN71_RS03005 -2.0 -6.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
QEN71_RS33705 -1.9 -6.2 cystathionine gamma-synthase family protein compare
QEN71_RS25625 -1.9 -14.1 glycosyltransferase family 2 protein compare
QEN71_RS26190 -1.9 -4.7 DUF883 family protein compare
QEN71_RS43010 -1.9 -1.5 cold-shock protein compare
QEN71_RS24940 -1.9 -9.3 heme biosynthesis protein HemY compare
QEN71_RS05480 -1.8 -14.2 phosphomethylpyrimidine synthase ThiC compare
QEN71_RS21980 -1.8 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
QEN71_RS05840 -1.8 -2.1 regulator compare
QEN71_RS29895 -1.8 -2.4 hypothetical protein compare
QEN71_RS25220 -1.8 -2.3 CbiX/SirB N-terminal domain-containing protein compare
QEN71_RS00180 -1.8 -3.4 DUF4390 domain-containing protein compare
QEN71_RS10610 -1.8 -3.1 nuclear transport factor 2 family protein compare
QEN71_RS38570 -1.7 -1.9 TetR/AcrR family transcriptional regulator compare
QEN71_RS14065 -1.7 -1.9 hypothetical protein compare
QEN71_RS17545 -1.7 -3.8 hypothetical protein compare
QEN71_RS24720 -1.7 -1.6 DUF4399 domain-containing protein compare
QEN71_RS26525 -1.7 -9.9 heat-inducible transcriptional repressor HrcA compare
QEN71_RS02355 -1.7 -13.0 succinate--CoA ligase subunit alpha compare
QEN71_RS06355 -1.7 -4.6 succinyl-diaminopimelate desuccinylase compare
QEN71_RS01440 -1.7 -4.6 S41 family peptidase compare
QEN71_RS26195 -1.7 -3.3 phage holin family protein compare
QEN71_RS08505 -1.7 -1.8 undecaprenyl-phosphate glucose phosphotransferase compare
QEN71_RS02350 -1.7 -13.0 ADP-forming succinate--CoA ligase subunit beta compare
QEN71_RS06455 -1.6 -5.5 RIP metalloprotease RseP compare
QEN71_RS38865 -1.6 -2.5 Ohr family peroxiredoxin compare
QEN71_RS37145 -1.6 -3.8 TetR family transcriptional regulator compare
QEN71_RS25425 -1.6 -2.6 glycosyltransferase compare
QEN71_RS03520 -1.6 -6.9 septum site-determining protein MinD compare
QEN71_RS41030 -1.5 -2.7 XRE family transcriptional regulator compare
QEN71_RS36740 -1.5 -1.5 lytic transglycosylase domain-containing protein compare
QEN71_RS29675 -1.5 -5.4 ribonuclease P protein component compare
QEN71_RS10960 -1.5 -2.7 OsmC family protein compare
QEN71_RS24830 -1.5 -4.9 ABC transporter permease subunit compare
QEN71_RS00235 -1.5 -1.3 rod shape-determining protein MreD compare
QEN71_RS17985 -1.4 -3.9 FadR/GntR family transcriptional regulator compare
QEN71_RS30945 -1.4 -2.4 hypothetical protein compare
QEN71_RS10145 -1.4 -4.9 lactate utilization protein C conserved
QEN71_RS36025 -1.4 -2.2 cupin domain-containing protein compare
QEN71_RS00185 -1.4 -4.9 PAS domain-containing sensor histidine kinase compare
QEN71_RS32995 -1.4 -2.1 hypothetical protein compare
QEN71_RS05615 -1.4 -2.0 oxidative damage protection protein compare
QEN71_RS01545 -1.4 -4.2 heme o synthase compare
QEN71_RS24235 -1.4 -3.1 DUF3619 family protein compare
QEN71_RS01240 -1.4 -2.0 acyl-ACP desaturase compare
QEN71_RS02345 -1.4 -4.0 DUF2889 domain-containing protein compare
QEN71_RS26140 -1.4 -1.3 crotonase/enoyl-CoA hydratase family protein compare
QEN71_RS05420 -1.4 -1.5 amino acid ABC transporter ATP-binding protein compare
QEN71_RS42235 -1.4 -0.9 nitrogenase stabilizing/protective protein NifW compare
QEN71_RS06050 -1.4 -5.3 colicin transporter compare
QEN71_RS26275 -1.4 -4.1 tol-pal system protein YbgF compare
QEN71_RS16775 -1.3 -3.8 chemotaxis protein CheB compare
QEN71_RS10135 -1.3 -3.7 FadR/GntR family transcriptional regulator compare
QEN71_RS26855 -1.3 -2.0 dihydroorotase compare
QEN71_RS25735 -1.3 -9.4 glycosyltransferase family 2 protein compare
QEN71_RS38895 -1.3 -1.5 TetR/AcrR family transcriptional regulator compare
QEN71_RS30540 -1.3 -1.6 enoyl-CoA hydratase/isomerase family protein compare
QEN71_RS17650 -1.3 -3.1 site-specific DNA-methyltransferase compare
QEN71_RS05720 -1.3 -11.0 oxygen sensor histidine kinase FixL compare
QEN71_RS03065 -1.3 -5.1 carboxylating nicotinate-nucleotide diphosphorylase compare
QEN71_RS26560 -1.2 -8.6 3-deoxy-7-phosphoheptulonate synthase AroG compare
QEN71_RS31990 -1.2 -1.6 cupin domain-containing protein compare
QEN71_RS10150 -1.2 -5.1 LutB/LldF family L-lactate oxidation iron-sulfur protein conserved
QEN71_RS18850 -1.2 -1.5 hemerythrin domain-containing protein compare
QEN71_RS34660 -1.2 -2.0 sterol desaturase family protein compare
QEN71_RS31335 -1.2 -3.4 amidohydrolase family protein compare
QEN71_RS24160 -1.2 -3.0 preprotein translocase subunit SecG compare
QEN71_RS33865 -1.2 -2.2 sugar-binding transcriptional regulator compare
QEN71_RS22510 -1.2 -2.9 anti-sigma factor compare
QEN71_RS38370 -1.2 -2.5 helix-turn-helix domain-containing protein compare
QEN71_RS01820 -1.2 -8.7 AI-2E family transporter compare
QEN71_RS36790 -1.2 -1.4 type III secretion system stator protein SctL compare
QEN71_RS23155 -1.2 -1.9 hypothetical protein compare
QEN71_RS24450 -1.2 -8.8 O-antigen ligase family protein compare
QEN71_RS16440 -1.1 -1.7 presqualene diphosphate synthase HpnD compare
QEN71_RS05735 -1.1 -5.4 dihydrolipoyl dehydrogenase compare
QEN71_RS37535 -1.1 -1.5 DUF3331 domain-containing protein compare
QEN71_RS23045 -1.1 -6.8 cell division protein ZapE compare
QEN71_RS13970 -1.1 -1.5 VOC family protein compare
QEN71_RS26775 -1.1 -2.2 Fis family transcriptional regulator compare
QEN71_RS03515 -1.1 -3.0 septum site-determining protein MinC compare
QEN71_RS24825 -1.1 -3.3 nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein compare
QEN71_RS01555 -1.1 -1.4 YciI family protein compare
QEN71_RS42850 -1.1 -1.4 IS21-like element helper ATPase IstB compare
QEN71_RS31740 -1.1 -3.6 type VI secretion system-associated protein TagF compare
QEN71_RS06500 -1.1 -1.0 pyruvate, water dikinase regulatory protein compare
QEN71_RS14950 -1.1 -1.8 hypothetical protein compare
QEN71_RS10030 -1.1 -1.2 hypothetical protein compare
QEN71_RS24910 -1.1 -2.6 H-NS family nucleoid-associated regulatory protein compare
QEN71_RS10140 -1.1 -2.7 (Fe-S)-binding protein compare
QEN71_RS33650 -1.1 -2.8 substrate-binding domain-containing protein compare
QEN71_RS27940 -1.1 -3.6 FAD-dependent oxidoreductase compare
QEN71_RS32715 -1.1 -1.5 formylmethanofuran dehydrogenase compare
QEN71_RS25105 -1.1 -4.7 adenosylcobinamide-phosphate synthase CbiB compare
QEN71_RS30745 -1.0 -0.9 hypothetical protein compare
QEN71_RS24220 -1.0 -2.2 acetolactate synthase small subunit compare
QEN71_RS21530 -1.0 -1.0 aspartate aminotransferase family protein compare
QEN71_RS03385 -1.0 -5.3 DNA translocase FtsK compare


Specific Phenotypes

None in this experiment

For Paraburkholderia sabiae LMG 24235 in carbon source experiments

For carbon source Sodium D,L-Lactate across organisms