Experiment set1S534 for Alteromonas macleodii MIT1002

Compare to:

Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 3

200 most important genes:

  gene name fitness t score description  
MIT1002_00113 -8.3 -5.8 Putative peroxiredoxin compare
MIT1002_03690 -8.2 -5.7 DnaK suppressor protein compare
MIT1002_00471 -8.1 -5.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
MIT1002_00504 -8.0 -5.3 Acetolactate synthase isozyme 3 small subunit compare
MIT1002_01027 -8.0 -5.5 Phosphoribosylformylglycinamidine synthase compare
MIT1002_00948 -8.0 -5.5 3-isopropylmalate dehydrogenase compare
MIT1002_02524 -8.0 -5.5 Amidophosphoribosyltransferase compare
MIT1002_04045 -7.9 -5.5 Ketol-acid reductoisomerase compare
MIT1002_01263 -7.9 -5.2 7-cyano-7-deazaguanine synthase compare
MIT1002_02636 -7.9 -5.4 Imidazole glycerol phosphate synthase subunit HisH compare
MIT1002_02833 -7.9 -5.4 Malate synthase G compare
MIT1002_00949 -7.8 -7.6 2-isopropylmalate synthase compare
MIT1002_00189 -7.7 -9.2 Galactokinase compare
MIT1002_03139 -7.7 -5.3 Glutamate synthase [NADPH] large chain precursor compare
MIT1002_03179 -7.7 -5.3 Cystathionine beta-lyase PatB compare
MIT1002_02220 -7.7 -5.3 Phosphoribosylglycinamide formyltransferase compare
MIT1002_02219 -7.7 -5.3 Phosphoribosylformylglycinamidine cyclo-ligase compare
MIT1002_00826 -7.6 -3.8 Ribosome hibernation promoting factor compare
MIT1002_00377 -7.6 -5.3 Branched-chain-amino-acid aminotransferase 2 compare
MIT1002_00522 -7.6 -5.2 N5-carboxyaminoimidazole ribonucleotide synthase compare
MIT1002_02831 -7.6 -5.2 Isocitrate lyase compare
MIT1002_01035 -7.5 -5.2 anti-sigma28 factor FlgM compare
MIT1002_03516 -7.5 -11.5 Acetyl-coenzyme A synthetase compare
MIT1002_03086 -7.4 -5.2 Aspartokinase I/homoserine dehydrogenase I compare
MIT1002_00946 -7.4 -8.8 3-isopropylmalate dehydratase small subunit 1 compare
MIT1002_00467 -7.4 -5.1 Argininosuccinate lyase compare
MIT1002_00947 -7.4 -5.1 3-isopropylmalate dehydratase large subunit compare
MIT1002_01266 -7.4 -5.1 Asparagine synthetase B [glutamine-hydrolyzing] compare
MIT1002_02639 -7.4 -5.1 Phosphoribosyl-ATP pyrophosphatase compare
MIT1002_03961 -7.4 -10.1 Phosphoribosylamine--glycine ligase compare
MIT1002_02993 -7.3 -5.0 D-3-phosphoglycerate dehydrogenase compare
MIT1002_02266 -7.3 -5.0 Methionine gamma-lyase compare
MIT1002_04040 -7.3 -10.0 L-threonine dehydratase biosynthetic IlvA compare
MIT1002_00485 -7.3 -5.0 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
MIT1002_04044 -7.2 -5.0 HTH-type transcriptional regulator GltC compare
MIT1002_00466 -7.2 -5.0 Amino-acid acetyltransferase compare
MIT1002_00469 -7.2 -11.0 Ornithine carbamoyltransferase compare
MIT1002_03140 -7.2 -5.0 Glutamate synthase [NADPH] small chain compare
MIT1002_02633 -7.2 -5.0 Histidinol dehydrogenase compare
MIT1002_02635 -7.2 -5.0 Histidine biosynthesis bifunctional protein HisB compare
MIT1002_02012 -7.2 -9.8 Pyruvate dehydrogenase E1 component subunit alpha compare
MIT1002_02702 -7.1 -7.0 Serine hydroxymethyltransferase compare
MIT1002_00424 -7.1 -9.8 Solvent efflux pump srpABC operon corepressor compare
MIT1002_00468 -7.1 -6.9 Argininosuccinate synthase compare
MIT1002_04041 -7.1 -4.9 Dihydroxy-acid dehydratase compare
MIT1002_01979 -7.0 -4.9 Carnitinyl-CoA dehydratase compare
MIT1002_02708 -7.0 -4.9 Phosphoserine phosphatase compare
MIT1002_03096 -7.0 -4.9 Isocitrate dehydrogenase kinase/phosphatase compare
MIT1002_01466 -7.0 -4.8 Carbamoyl-phosphate synthase small chain compare
MIT1002_01122 -7.0 -13.4 Bicarbonate transporter BicA compare
MIT1002_01467 -6.9 -4.8 Carbamoyl-phosphate synthase large chain compare
MIT1002_03084 -6.9 -4.8 Threonine synthase compare
MIT1002_02973 -6.9 -6.7 Aminomethyltransferase compare
MIT1002_02014 -6.9 -8.2 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex compare
MIT1002_02634 -6.9 -9.4 Histidinol-phosphate aminotransferase compare
MIT1002_00160 -6.8 -4.7 Diaminopimelate decarboxylase compare
MIT1002_03130 -6.8 -4.7 2-methylcitrate synthase compare
MIT1002_03062 -6.8 -4.7 Pyrroline-5-carboxylate reductase compare
MIT1002_02637 -6.8 -4.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MIT1002_02972 -6.7 -4.7 Glycine cleavage system H protein compare
MIT1002_01112 -6.7 -8.6 Homoserine O-succinyltransferase compare
MIT1002_01264 -6.7 -4.6 7-carboxy-7-deazaguanine synthase compare
MIT1002_02394 -6.7 -4.6 Glyceraldehyde-3-phosphate dehydrogenase compare
MIT1002_01429 -6.7 -4.6 Anthranilate synthase component II compare
MIT1002_03885 -6.7 -6.5 NADH dehydrogenase compare
MIT1002_01428 -6.7 -4.6 Anthranilate synthase component II compare
MIT1002_00503 -6.7 -11.1 Acetolactate synthase isozyme 3 large subunit compare
MIT1002_00437 -6.6 -4.6 Succinylornithine transaminase/acetylornithine aminotransferase compare
MIT1002_03085 -6.6 -4.5 Homoserine kinase compare
MIT1002_02013 -6.5 -11.7 2-oxoisovalerate dehydrogenase subunit beta compare
MIT1002_02832 -6.4 -4.4 Nodulation protein D 2 compare
MIT1002_02757 -6.4 -13.1 Lon protease compare
MIT1002_00988 -6.4 -4.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
MIT1002_01885 -6.4 -8.7 Gamma-glutamyl phosphate reductase compare
MIT1002_01295 -6.3 -4.4 Inner membrane protein YpjD compare
MIT1002_00843 -6.3 -7.5 hypothetical protein compare
MIT1002_03785 -6.3 -15.2 Modulator of FtsH protease HflC compare
MIT1002_01316 -6.2 -4.3 P-protein compare
MIT1002_03786 -6.2 -15.5 Modulator of FtsH protease HflK compare
MIT1002_02971 -6.2 -20.6 Glycine dehydrogenase [decarboxylating] compare
MIT1002_01430 -6.2 -4.3 Anthranilate synthase component 1 compare
MIT1002_01763 -6.2 -3.6 Putative pterin-4-alpha-carbinolamine dehydratase compare
MIT1002_02638 -6.1 -8.1 Imidazole glycerol phosphate synthase subunit HisF compare
MIT1002_01984 -6.1 -8.4 queuosine biosynthesis protein QueD compare
MIT1002_01129 -6.1 -3.4 Carbon storage regulator compare
MIT1002_03908 -6.1 -14.2 NAD(P) transhydrogenase subunit alpha compare
MIT1002_03698 -6.0 -8.2 tRNA (guanine-N(7)-)-methyltransferase compare
MIT1002_02632 -6.0 -4.1 ATP phosphoribosyltransferase compare
MIT1002_00076 -5.9 -3.6 transcriptional regulator, y4mF family compare
MIT1002_02991 -5.9 -4.1 putative 5-formyltetrahydrofolate cyclo-ligase compare
MIT1002_00138 -5.9 -13.7 Histone deacetylase-like amidohydrolase compare
MIT1002_04056 -5.8 -11.0 Glutamate 5-kinase compare
MIT1002_00423 -5.7 -4.0 Aspartate carbamoyltransferase catalytic chain compare
MIT1002_00521 -5.7 -3.9 N5-carboxyaminoimidazole ribonucleotide mutase compare
MIT1002_03907 -5.6 -17.4 NAD(P) transhydrogenase subunit beta compare
MIT1002_03539 -5.6 -3.3 Bifunctional protein BirA compare
MIT1002_04092 -5.6 -3.8 putative type I restriction enzymeP M protein compare
MIT1002_00470 -5.6 -8.6 Acetylglutamate kinase compare
MIT1002_00188 -5.5 -11.5 Galactose-1-phosphate uridylyltransferase compare
MIT1002_00877 -5.5 -6.6 Repressor protein PhoU compare
MIT1002_00827 -5.5 -3.3 RNA polymerase sigma-54 factor 2 compare
MIT1002_02184 -5.4 -2.7 Orotidine 5'-phosphate decarboxylase compare
MIT1002_02035 -5.4 -2.3 Dihydroorotate dehydrogenase (quinone) compare
MIT1002_00625 -5.3 -13.5 RNA polymerase sigma factor RpoS compare
MIT1002_01736 -5.3 -15.8 Aminodeoxychorismate lyase compare
MIT1002_03909 -5.2 -11.4 NAD(P) transhydrogenase subunit alpha part 1 compare
MIT1002_03481 -5.2 -3.2 hypothetical protein compare
MIT1002_02348 -5.2 -15.6 hypothetical protein compare
MIT1002_02130 -5.2 -2.6 cbb3-type cytochrome c oxidase subunit II compare
MIT1002_01544 -5.2 -13.7 D-alanyl-D-alanine carboxypeptidase compare
MIT1002_00074 -5.1 -3.2 tRNA-Arg compare
MIT1002_03488 -5.1 -3.5 Na(+)-translocating NADH-quinone reductase subunit A compare
MIT1002_01345 -5.1 -2.6 tRNA-Ser compare
MIT1002_03321 -5.1 -15.7 Aldehyde dehydrogenase B compare
MIT1002_02760 -5.0 -5.2 ATP-dependent Clp protease proteolytic subunit precursor compare
MIT1002_02807 -5.0 -3.4 Inositol-1-monophosphatase compare
MIT1002_03331 -5.0 -9.8 D-lactate dehydrogenase compare
MIT1002_02718 -4.9 -5.1 Sigma-E factor negative regulatory protein compare
MIT1002_04135 -4.9 -11.4 ParB/RepB/Spo0J family partition protein compare
MIT1002_02306 -4.9 -6.2 Glutamate-pyruvate aminotransferase AlaA compare
MIT1002_04134 -4.9 -18.7 Sporulation initiation inhibitor protein soj compare
MIT1002_01638 -4.9 -3.4 Integration host factor subunit alpha compare
MIT1002_02188 -4.9 -3.3 Integration host factor subunit beta compare
MIT1002_02810 -4.9 -13.9 preprotein translocase subunit SecF compare
MIT1002_00486 -4.8 -1.2 Protein-export protein SecB compare
MIT1002_00094 -4.8 -1.2 sulfur carrier protein ThiS compare
MIT1002_02811 -4.8 -19.9 preprotein translocase subunit SecD compare
MIT1002_03003 -4.8 -3.3 Pyruvate dehydrogenase E1 component compare
MIT1002_01427 -4.7 -3.7 Tryptophan biosynthesis protein TrpCF compare
MIT1002_03978 -4.7 -3.2 General secretion pathway protein F compare
MIT1002_00814 -4.7 -3.2 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
MIT1002_01830 -4.7 -12.7 Isocitrate dehydrogenase [NADP] 2 compare
MIT1002_01925 -4.6 -2.0 hypothetical protein compare
MIT1002_03484 -4.6 -2.3 Na(+)-translocating NADH-quinone reductase subunit E compare
MIT1002_03015 -4.6 -10.6 aspartoacylase compare
MIT1002_00874 -4.6 -15.7 Phosphate transport system permease protein PstC compare
MIT1002_03979 -4.6 -2.0 Pullulanase secretion protein PulG compare
MIT1002_03977 -4.5 -3.1 Type II traffic warden ATPase compare
MIT1002_00809 -4.5 -13.5 Sensor protein QseC compare
MIT1002_03483 -4.5 -2.2 Na(+)-translocating NADH-quinone reductase subunit F compare
MIT1002_00753 -4.5 -10.2 Phosphate-binding protein PstS 1 precursor compare
MIT1002_00115 -4.4 -2.2 Iron(III)-binding periplasmic protein compare
MIT1002_03805 -4.4 -2.7 hypothetical protein compare
MIT1002_03485 -4.4 -2.7 Na(+)-translocating NADH-quinone reductase subunit D compare
MIT1002_00816 -4.4 -3.0 Cytochrome c1 precursor compare
MIT1002_00235 -4.4 -3.3 Glycogen synthase compare
MIT1002_00876 -4.4 -9.1 Phosphate import ATP-binding protein PstB 3 compare
MIT1002_03980 -4.4 -3.0 General secretion pathway protein H compare
MIT1002_00884 -4.4 -3.4 hypothetical protein compare
MIT1002_01917 -4.4 -4.4 hypothetical protein compare
MIT1002_03982 -4.4 -2.8 PilD-dependent protein PddD compare
MIT1002_02404 -4.3 -9.9 Glucokinase compare
MIT1002_02349 -4.3 -13.4 2-hydroxypropyl-CoM lyase compare
MIT1002_01163 -4.3 -2.6 hypothetical protein compare
MIT1002_02132 -4.3 -2.6 Cytochrome c oxidase subunit III compare
MIT1002_03487 -4.2 -2.9 Na(+)-translocating NADH-quinone reductase subunit B compare
MIT1002_02406 -4.2 -2.9 6-phosphogluconolactonase compare
MIT1002_02681 -4.2 -8.9 Transcriptional activator ChrR compare
MIT1002_03981 -4.2 -2.0 Putative general secretion pathway protein I compare
MIT1002_00233 -4.2 -4.0 Dye resistance protein compare
MIT1002_03616 -4.1 -6.1 NAD(P)H-flavin reductase compare
MIT1002_00875 -4.1 -15.3 Phosphate transport system permease protein PstA compare
MIT1002_01457 -4.1 -1.4 Heat shock protein 70 compare
MIT1002_00117 -4.1 -2.5 Maltose/maltodextrin import ATP-binding protein MalK compare
MIT1002_03486 -4.1 -2.8 Na(+)-translocating NADH-quinone reductase subunit C compare
MIT1002_03976 -4.1 -2.8 Pullulanase secretion envelope PulD compare
MIT1002_03983 -4.0 -2.7 Putative general secretion pathway protein K compare
MIT1002_02812 -3.9 -4.2 preprotein translocase subunit YajC compare
MIT1002_01119 -3.9 -14.0 HTH-type transcriptional regulator GltC compare
MIT1002_01168 -3.9 -2.2 Flp pilus assembly protein TadD, contains TPR repeats compare
MIT1002_03002 -3.8 -4.5 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex compare
MIT1002_04093 -3.8 -1.3 Type I restriction modification DNA specificity domain protein compare
MIT1002_00815 -3.8 -4.5 Cytochrome b/c1 compare
MIT1002_03581 -3.8 -9.9 Mannose-1-phosphate guanylyltransferase 1 compare
MIT1002_02581 -3.7 -3.9 Disulfide oxidoreductase compare
MIT1002_03186 -3.7 -12.5 Nitrogen regulation protein NR(I) compare
MIT1002_00068 -3.7 -6.4 Chorismate--pyruvate lyase compare
MIT1002_02429 -3.7 -11.6 Glucose-resistance amylase regulator compare
MIT1002_01222 -3.7 -2.2 Glutamate--cysteine ligase compare
MIT1002_01832 -3.7 -3.3 Cold shock-like protein CspD compare
MIT1002_01435 -3.7 -2.0 Ribosomal large subunit pseudouridine synthase B compare
MIT1002_01001 -3.6 -8.7 PII uridylyl-transferase compare
MIT1002_03137 -3.6 -9.5 Aerobic respiration control sensor protein ArcB compare
MIT1002_01378 -3.6 -16.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
MIT1002_03162 -3.5 -2.2 Iron-sulfur cluster insertion protein ErpA compare
MIT1002_02136 -3.5 -6.6 hypothetical protein compare
MIT1002_02287 -3.5 -9.3 Electron transfer flavoprotein small subunit compare
MIT1002_03984 -3.5 -2.4 General secretion pathway protein L compare
MIT1002_02129 -3.4 -7.2 hypothetical protein compare
MIT1002_00012 -3.4 -4.3 Cytochrome c4 precursor compare
MIT1002_02679 -3.4 -4.4 Ribosomal large subunit pseudouridine synthase D compare
MIT1002_00116 -3.4 -2.1 Spermidine/putrescine transport system permease protein PotB compare
MIT1002_00575 -3.3 -11.9 Fatty acid oxidation complex subunit alpha compare
MIT1002_02785 -3.3 -9.5 Outer membrane protein assembly factor BamB precursor compare
MIT1002_03317 -3.3 -6.1 Transcriptional regulatory protein DevR (DosR) compare
MIT1002_03109 -3.3 -6.4 Saccharopine dehydrogenase compare
MIT1002_00108 -3.3 -7.1 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MIT1002_02286 -3.3 -9.2 Electron transfer flavoprotein large subunit compare
MIT1002_04124 -3.2 -2.2 Glucose-inhibited division protein A compare
MIT1002_02218 -3.2 -4.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Alteromonas macleodii MIT1002 in mixed community experiments

For mixed community Mixed culture; Prochlorococcus marinus str. MIT9313 10:1 starting OD to HP15 across organisms