Experiment set1S531 for Alteromonas macleodii MIT1002

Compare to:

Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 2

200 most important genes:

  gene name fitness t score description  
MIT1002_03690 -8.4 -5.8 DnaK suppressor protein compare
MIT1002_02636 -8.2 -5.6 Imidazole glycerol phosphate synthase subunit HisH compare
MIT1002_01263 -8.2 -5.4 7-cyano-7-deazaguanine synthase compare
MIT1002_00113 -8.1 -7.9 Putative peroxiredoxin compare
MIT1002_00504 -8.1 -10.5 Acetolactate synthase isozyme 3 small subunit compare
MIT1002_04045 -8.1 -5.6 Ketol-acid reductoisomerase compare
MIT1002_00946 -8.0 -5.5 3-isopropylmalate dehydratase small subunit 1 compare
MIT1002_01112 -7.9 -5.5 Homoserine O-succinyltransferase compare
MIT1002_02833 -7.9 -10.9 Malate synthase G compare
MIT1002_02524 -7.9 -12.1 Amidophosphoribosyltransferase compare
MIT1002_03179 -7.9 -5.5 Cystathionine beta-lyase PatB compare
MIT1002_01027 -7.8 -17.6 Phosphoribosylformylglycinamidine synthase compare
MIT1002_00469 -7.8 -7.6 Ornithine carbamoyltransferase compare
MIT1002_00522 -7.7 -5.4 N5-carboxyaminoimidazole ribonucleotide synthase compare
MIT1002_02831 -7.7 -7.5 Isocitrate lyase compare
MIT1002_01266 -7.6 -5.3 Asparagine synthetase B [glutamine-hydrolyzing] compare
MIT1002_00949 -7.6 -16.9 2-isopropylmalate synthase compare
MIT1002_03139 -7.5 -17.6 Glutamate synthase [NADPH] large chain precursor compare
MIT1002_02993 -7.5 -5.2 D-3-phosphoglycerate dehydrogenase compare
MIT1002_02219 -7.4 -11.4 Phosphoribosylformylglycinamidine cyclo-ligase compare
MIT1002_00948 -7.4 -15.1 3-isopropylmalate dehydrogenase compare
MIT1002_03140 -7.4 -5.1 Glutamate synthase [NADPH] small chain compare
MIT1002_00485 -7.4 -5.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
MIT1002_02220 -7.4 -11.3 Phosphoribosylglycinamide formyltransferase compare
MIT1002_02635 -7.4 -7.2 Histidine biosynthesis bifunctional protein HisB compare
MIT1002_01466 -7.3 -5.1 Carbamoyl-phosphate synthase small chain compare
MIT1002_04040 -7.3 -18.9 L-threonine dehydratase biosynthetic IlvA compare
MIT1002_00947 -7.3 -10.0 3-isopropylmalate dehydratase large subunit compare
MIT1002_01467 -7.2 -5.0 Carbamoyl-phosphate synthase large chain compare
MIT1002_02633 -7.2 -9.9 Histidinol dehydrogenase compare
MIT1002_02634 -7.2 -8.6 Histidinol-phosphate aminotransferase compare
MIT1002_00466 -7.2 -11.0 Amino-acid acetyltransferase compare
MIT1002_03096 -7.1 -7.0 Isocitrate dehydrogenase kinase/phosphatase compare
MIT1002_04041 -7.1 -7.0 Dihydroxy-acid dehydratase compare
MIT1002_03084 -7.1 -6.9 Threonine synthase compare
MIT1002_00471 -7.1 -19.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
MIT1002_00377 -7.1 -12.8 Branched-chain-amino-acid aminotransferase 2 compare
MIT1002_03086 -7.1 -14.4 Aspartokinase I/homoserine dehydrogenase I compare
MIT1002_02394 -7.0 -4.9 Glyceraldehyde-3-phosphate dehydrogenase compare
MIT1002_02637 -7.0 -4.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MIT1002_03130 -7.0 -4.9 2-methylcitrate synthase compare
MIT1002_02266 -7.0 -10.7 Methionine gamma-lyase compare
MIT1002_03062 -7.0 -4.8 Pyrroline-5-carboxylate reductase compare
MIT1002_00160 -7.0 -4.8 Diaminopimelate decarboxylase compare
MIT1002_02638 -7.0 -9.6 Imidazole glycerol phosphate synthase subunit HisF compare
MIT1002_00467 -6.9 -13.4 Argininosuccinate lyase compare
MIT1002_02702 -6.9 -12.3 Serine hydroxymethyltransferase compare
MIT1002_01885 -6.8 -8.2 Gamma-glutamyl phosphate reductase compare
MIT1002_02708 -6.8 -9.4 Phosphoserine phosphatase compare
MIT1002_00503 -6.8 -12.3 Acetolactate synthase isozyme 3 large subunit compare
MIT1002_03085 -6.8 -4.7 Homoserine kinase compare
MIT1002_03961 -6.8 -17.5 Phosphoribosylamine--glycine ligase compare
MIT1002_01428 -6.7 -6.6 Anthranilate synthase component II compare
MIT1002_02832 -6.7 -4.6 Nodulation protein D 2 compare
MIT1002_00468 -6.7 -14.3 Argininosuccinate synthase compare
MIT1002_01295 -6.6 -4.6 Inner membrane protein YpjD compare
MIT1002_01984 -6.5 -8.9 queuosine biosynthesis protein QueD compare
MIT1002_00437 -6.5 -8.9 Succinylornithine transaminase/acetylornithine aminotransferase compare
MIT1002_00189 -6.5 -27.2 Galactokinase compare
MIT1002_01430 -6.5 -4.5 Anthranilate synthase component 1 compare
MIT1002_02639 -6.4 -14.2 Phosphoribosyl-ATP pyrophosphatase compare
MIT1002_01129 -6.3 -3.5 Carbon storage regulator compare
MIT1002_02632 -6.3 -4.3 ATP phosphoribosyltransferase compare
MIT1002_00988 -6.2 -8.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
MIT1002_03516 -6.1 -19.7 Acetyl-coenzyme A synthetase compare
MIT1002_01264 -6.1 -8.3 7-carboxy-7-deazaguanine synthase compare
MIT1002_01979 -6.0 -12.9 Carnitinyl-CoA dehydratase compare
MIT1002_04044 -6.0 -20.2 HTH-type transcriptional regulator GltC compare
MIT1002_00423 -5.9 -4.1 Aspartate carbamoyltransferase catalytic chain compare
MIT1002_00826 -5.9 -4.8 Ribosome hibernation promoting factor compare
MIT1002_00521 -5.8 -4.0 N5-carboxyaminoimidazole ribonucleotide mutase compare
MIT1002_02184 -5.7 -2.9 Orotidine 5'-phosphate decarboxylase compare
MIT1002_04092 -5.7 -3.9 putative type I restriction enzymeP M protein compare
MIT1002_02035 -5.7 -2.5 Dihydroorotate dehydrogenase (quinone) compare
MIT1002_01316 -5.7 -10.9 P-protein compare
MIT1002_03885 -5.6 -12.5 NADH dehydrogenase compare
MIT1002_00138 -5.5 -15.2 Histone deacetylase-like amidohydrolase compare
MIT1002_02991 -5.5 -6.6 putative 5-formyltetrahydrofolate cyclo-ligase compare
MIT1002_01429 -5.4 -6.5 Anthranilate synthase component II compare
MIT1002_01345 -5.4 -2.7 tRNA-Ser compare
MIT1002_00470 -5.3 -8.4 Acetylglutamate kinase compare
MIT1002_03488 -5.2 -3.6 Na(+)-translocating NADH-quinone reductase subunit A compare
MIT1002_01638 -5.2 -3.6 Integration host factor subunit alpha compare
MIT1002_02188 -5.2 -3.5 Integration host factor subunit beta compare
MIT1002_02306 -5.0 -10.0 Glutamate-pyruvate aminotransferase AlaA compare
MIT1002_00486 -4.9 -1.2 Protein-export protein SecB compare
MIT1002_01035 -4.9 -6.1 anti-sigma28 factor FlgM compare
MIT1002_03907 -4.9 -18.2 NAD(P) transhydrogenase subunit beta compare
MIT1002_00843 -4.9 -8.9 hypothetical protein compare
MIT1002_03978 -4.8 -3.3 General secretion pathway protein F compare
MIT1002_04056 -4.8 -12.6 Glutamate 5-kinase compare
MIT1002_03484 -4.7 -2.4 Na(+)-translocating NADH-quinone reductase subunit E compare
MIT1002_03979 -4.7 -2.0 Pullulanase secretion protein PulG compare
MIT1002_03909 -4.7 -13.3 NAD(P) transhydrogenase subunit alpha part 1 compare
MIT1002_03977 -4.6 -3.2 Type II traffic warden ATPase compare
MIT1002_00115 -4.6 -2.3 Iron(III)-binding periplasmic protein compare
MIT1002_00877 -4.6 -9.6 Repressor protein PhoU compare
MIT1002_00827 -4.6 -3.5 RNA polymerase sigma-54 factor 2 compare
MIT1002_03805 -4.5 -2.8 hypothetical protein compare
MIT1002_00074 -4.5 -3.7 tRNA-Arg compare
MIT1002_02406 -4.5 -3.1 6-phosphogluconolactonase compare
MIT1002_03485 -4.5 -2.8 Na(+)-translocating NADH-quinone reductase subunit D compare
MIT1002_03980 -4.5 -3.1 General secretion pathway protein H compare
MIT1002_03982 -4.5 -2.9 PilD-dependent protein PddD compare
MIT1002_03908 -4.5 -13.3 NAD(P) transhydrogenase subunit alpha compare
MIT1002_01736 -4.4 -16.3 Aminodeoxychorismate lyase compare
MIT1002_03487 -4.4 -3.0 Na(+)-translocating NADH-quinone reductase subunit B compare
MIT1002_01457 -4.4 -1.5 Heat shock protein 70 compare
MIT1002_03981 -4.3 -2.1 Putative general secretion pathway protein I compare
MIT1002_03331 -4.3 -9.1 D-lactate dehydrogenase compare
MIT1002_00117 -4.2 -2.6 Maltose/maltodextrin import ATP-binding protein MalK compare
MIT1002_03486 -4.2 -2.9 Na(+)-translocating NADH-quinone reductase subunit C compare
MIT1002_03976 -4.2 -2.9 Pullulanase secretion envelope PulD compare
MIT1002_01427 -4.2 -3.6 Tryptophan biosynthesis protein TrpCF compare
MIT1002_00814 -4.2 -5.7 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
MIT1002_02129 -4.1 -6.8 hypothetical protein compare
MIT1002_03055 -4.1 -6.8 Glutathione synthetase compare
MIT1002_03983 -4.1 -2.8 Putative general secretion pathway protein K compare
MIT1002_01168 -4.1 -2.3 Flp pilus assembly protein TadD, contains TPR repeats compare
MIT1002_00884 -4.0 -3.7 hypothetical protein compare
MIT1002_03015 -4.0 -11.6 aspartoacylase compare
MIT1002_01435 -4.0 -2.2 Ribosomal large subunit pseudouridine synthase B compare
MIT1002_01222 -3.9 -2.4 Glutamate--cysteine ligase compare
MIT1002_00844 -3.9 -8.6 AFG1-like ATPase compare
MIT1002_04093 -3.9 -1.4 Type I restriction modification DNA specificity domain protein compare
MIT1002_00068 -3.9 -9.9 Chorismate--pyruvate lyase compare
MIT1002_02972 -3.8 -7.4 Glycine cleavage system H protein compare
MIT1002_00816 -3.8 -4.5 Cytochrome c1 precursor compare
MIT1002_02348 -3.8 -14.6 hypothetical protein compare
MIT1002_02133 -3.8 -4.2 putative integral membrane protein linked to a cation pump compare
MIT1002_03186 -3.7 -13.5 Nitrogen regulation protein NR(I) compare
MIT1002_02760 -3.7 -6.4 ATP-dependent Clp protease proteolytic subunit precursor compare
MIT1002_03539 -3.7 -3.3 Bifunctional protein BirA compare
MIT1002_03137 -3.6 -10.1 Aerobic respiration control sensor protein ArcB compare
MIT1002_03984 -3.6 -2.5 General secretion pathway protein L compare
MIT1002_00876 -3.6 -9.2 Phosphate import ATP-binding protein PstB 3 compare
MIT1002_02008 -3.5 -13.9 Para-aminobenzoate synthase component 1 compare
MIT1002_02136 -3.5 -7.6 hypothetical protein compare
MIT1002_00116 -3.5 -2.2 Spermidine/putrescine transport system permease protein PotB compare
MIT1002_03003 -3.5 -7.7 Pyruvate dehydrogenase E1 component compare
MIT1002_00076 -3.5 -4.3 transcriptional regulator, y4mF family compare
MIT1002_03317 -3.5 -6.0 Transcriptional regulatory protein DevR (DosR) compare
MIT1002_01163 -3.5 -3.1 hypothetical protein compare
MIT1002_02807 -3.5 -4.8 Inositol-1-monophosphatase compare
MIT1002_00114 -3.4 -2.5 hypothetical protein compare
MIT1002_00753 -3.4 -9.9 Phosphate-binding protein PstS 1 precursor compare
MIT1002_00439 -3.3 -12.0 Para-aminobenzoate synthase glutamine amidotransferase component II compare
MIT1002_04124 -3.3 -2.3 Glucose-inhibited division protein A compare
MIT1002_02349 -3.3 -12.6 2-hydroxypropyl-CoM lyase compare
MIT1002_02971 -3.2 -18.7 Glycine dehydrogenase [decarboxylating] compare
MIT1002_03481 -3.2 -3.3 hypothetical protein compare
MIT1002_00188 -3.2 -9.4 Galactose-1-phosphate uridylyltransferase compare
MIT1002_02132 -3.2 -3.0 Cytochrome c oxidase subunit III compare
MIT1002_02134 -3.2 -9.2 putative copper-importing P-type ATPase A compare
MIT1002_03321 -3.2 -14.1 Aldehyde dehydrogenase B compare
MIT1002_00161 -3.1 -3.2 putative small periplasmic lipoprotein compare
MIT1002_00670 -3.1 -2.1 Outer membrane protein TolC precursor compare
MIT1002_00875 -3.1 -12.8 Phosphate transport system permease protein PstA compare
MIT1002_00883 -3.1 -4.6 putative transmembrane transcriptional regulator (anti-sigma factor) compare
MIT1002_01544 -3.0 -11.6 D-alanyl-D-alanine carboxypeptidase compare
MIT1002_02757 -3.0 -15.1 Lon protease compare
MIT1002_02973 -3.0 -11.8 Aminomethyltransferase compare
MIT1002_00233 -2.9 -5.1 Dye resistance protein compare
MIT1002_03002 -2.9 -6.6 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex compare
MIT1002_04050 -2.9 -1.8 hypothetical protein compare
MIT1002_00874 -2.8 -11.5 Phosphate transport system permease protein PstC compare
MIT1002_03185 -2.8 -12.8 Nitrogen regulation protein NR(II) compare
MIT1002_02404 -2.7 -7.5 Glucokinase compare
MIT1002_00235 -2.7 -4.0 Glycogen synthase compare
MIT1002_03698 -2.7 -5.9 tRNA (guanine-N(7)-)-methyltransferase compare
MIT1002_02128 -2.7 -3.1 hypothetical protein compare
MIT1002_03785 -2.7 -11.7 Modulator of FtsH protease HflC compare
MIT1002_01379 -2.7 -10.3 Biotin synthase compare
MIT1002_01119 -2.6 -12.4 HTH-type transcriptional regulator GltC compare
MIT1002_01378 -2.6 -12.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
MIT1002_02653 -2.6 -2.0 Nucleoid-associated protein YbaB compare
MIT1002_03786 -2.6 -9.2 Modulator of FtsH protease HflK compare
MIT1002_00066 -2.6 -7.3 Rhomboid protease GlpG compare
MIT1002_01001 -2.6 -9.4 PII uridylyl-transferase compare
MIT1002_03581 -2.6 -9.2 Mannose-1-phosphate guanylyltransferase 1 compare
MIT1002_01382 -2.6 -9.5 ATP-dependent dethiobiotin synthetase BioD 1 compare
MIT1002_02405 -2.5 -7.7 Phosphogluconate dehydratase compare
MIT1002_03616 -2.5 -5.4 NAD(P)H-flavin reductase compare
MIT1002_00097 -2.4 -16.4 Phosphomethylpyrimidine synthase compare
MIT1002_02014 -2.4 -12.2 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex compare
MIT1002_01925 -2.4 -1.5 hypothetical protein compare
MIT1002_00424 -2.4 -10.5 Solvent efflux pump srpABC operon corepressor compare
MIT1002_04134 -2.4 -12.4 Sporulation initiation inhibitor protein soj compare
MIT1002_03985 -2.4 -3.9 General secretion pathway protein M compare
MIT1002_00815 -2.4 -4.2 Cytochrome b/c1 compare
MIT1002_00092 -2.3 -10.5 2-iminoacetate synthase compare
MIT1002_01380 -2.3 -12.4 8-amino-7-oxononanoate synthase compare
MIT1002_02013 -2.3 -10.0 2-oxoisovalerate dehydrogenase subunit beta compare
MIT1002_02130 -2.3 -2.2 cbb3-type cytochrome c oxidase subunit II compare
MIT1002_04135 -2.3 -12.2 ParB/RepB/Spo0J family partition protein compare
MIT1002_04036 -2.3 -3.9 LexA repressor compare
MIT1002_03116 -2.3 -7.7 Spore coat protein SA compare
MIT1002_02573 -2.3 -6.7 hypothetical protein compare
MIT1002_04120 -2.3 -1.7 F0F1 ATP synthase subunit I compare
MIT1002_00093 -2.2 -10.2 Thiazole synthase compare


Specific Phenotypes

None in this experiment

For Alteromonas macleodii MIT1002 in mixed community experiments

For mixed community Mixed culture; Prochlorococcus marinus str. MIT9313 10:1 starting OD to HP15 across organisms