Experiment set1S53 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
MPMX19_03906 -4.4 -16.7 Pca regulon regulatory protein compare
MPMX19_05680 -3.2 -3.8 Cell cycle response regulator CtrA compare
MPMX19_01495 -3.1 -3.9 hypothetical protein compare
MPMX19_00530 -3.0 -5.0 Orotate phosphoribosyltransferase compare
MPMX19_00705 -2.6 -3.9 Cell division coordinator CpoB compare
MPMX19_04112 -2.5 -5.0 hypothetical protein compare
MPMX19_01497 -2.3 -5.2 hypothetical protein compare
MPMX19_00838 -2.3 -4.0 GTP pyrophosphokinase rsh compare
MPMX19_00128 -2.3 -12.9 hypothetical protein compare
MPMX19_02267 -2.2 -1.5 hypothetical protein compare
MPMX19_01054 -2.2 -7.0 Aspartate carbamoyltransferase compare
MPMX19_02657 -2.1 -16.8 Glutamate synthase [NADPH] large chain compare
MPMX19_00262 -2.1 -2.6 Thiazole synthase compare
MPMX19_04913 -2.0 -2.5 hypothetical protein compare
MPMX19_04114 -2.0 -4.1 hypothetical protein compare
MPMX19_04092 -2.0 -8.4 Flagellar motor switch protein FliN compare
MPMX19_01053 -2.0 -4.2 Dihydroorotase compare
MPMX19_06746 -2.0 -2.4 Chemotaxis protein CheW compare
MPMX19_01483 -2.0 -11.5 Flagellar basal-body rod protein FlgG compare
MPMX19_03752 -1.9 -2.8 hypothetical protein compare
MPMX19_04000 -1.9 -4.1 Flagellar motor switch protein FliG compare
MPMX19_06547 -1.9 -7.3 hypothetical protein compare
MPMX19_00862 -1.9 -9.7 hypothetical protein compare
MPMX19_00714 -1.8 -7.8 Ferrous-iron efflux pump FieF compare
MPMX19_05217 -1.8 -1.9 Flagellin compare
MPMX19_00858 -1.7 -5.9 Flagellar biosynthetic protein FliP compare
MPMX19_04094 -1.7 -9.2 Flagellar M-ring protein compare
MPMX19_03976 -1.7 -5.4 hypothetical protein compare
MPMX19_00864 -1.7 -5.1 Flagellar hook-basal body complex protein FliE compare
MPMX19_01014 -1.7 -5.5 Indole-3-glycerol phosphate synthase compare
MPMX19_02658 -1.7 -10.5 Glutamate synthase [NADPH] small chain compare
MPMX19_06179 -1.6 -2.4 putative SURF1-like protein compare
MPMX19_02268 -1.6 -3.9 hypothetical protein compare
MPMX19_00863 -1.6 -8.3 Flagellar basal-body rod protein FlgC compare
MPMX19_05387 -1.6 -2.7 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
MPMX19_00867 -1.6 -11.5 Flagellar biosynthetic protein FlhB compare
MPMX19_01484 -1.5 -6.1 Flagellar basal-body rod protein FlgG compare
MPMX19_00866 -1.5 -7.5 Flagellar biosynthetic protein FliR compare
MPMX19_05679 -1.4 -7.6 Flagellum-specific ATP synthase compare
MPMX19_01884 -1.4 -3.2 Phosphoribosylformylglycinamidine synthase subunit PurQ compare
MPMX19_05511 -1.3 -3.7 hypothetical protein compare
MPMX19_05678 -1.3 -6.2 hypothetical protein compare
MPMX19_00311 -1.3 -10.8 hypothetical protein compare
MPMX19_02543 -1.3 -2.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX19_04222 -1.3 -9.4 hypothetical protein compare
MPMX19_01545 -1.3 -1.6 Lon protease compare
MPMX19_04208 -1.3 -2.3 flagellum biosynthesis repressor protein FlbT compare
MPMX19_06373 -1.3 -2.1 Lipoprotein signal peptidase compare
MPMX19_03281 -1.2 -3.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_04087 -1.2 -1.7 Flagellum site-determining protein YlxH compare
MPMX19_04093 -1.2 -3.5 hypothetical protein compare
MPMX19_01883 -1.2 -5.8 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_04392 -1.2 -2.5 Bifunctional methionine biosynthesis protein MetXA/MetW compare
MPMX19_00304 -1.2 -2.9 Phosphatidylcholine synthase compare
MPMX19_00849 -1.2 -2.5 hypothetical protein compare
MPMX19_04089 -1.1 -8.1 Flagellar biosynthesis protein FlhA compare
MPMX19_05442 -1.1 -2.8 Ribosomal large subunit pseudouridine synthase D compare
MPMX19_06700 -1.1 -1.1 Copper-sensing transcriptional repressor RicR compare
MPMX19_00126 -1.1 -2.9 hypothetical protein compare
MPMX19_00236 -1.1 -2.5 HTH-type transcriptional regulator IscR compare
MPMX19_02675 -1.1 -8.4 Phosphoenolpyruvate-dependent phosphotransferase system compare
MPMX19_01630 -1.1 -3.2 Phosphoribosylamine--glycine ligase compare
MPMX19_02981 -1.1 -4.6 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_02531 -1.1 -1.5 hypothetical protein compare
MPMX19_05044 -1.1 -1.8 hypothetical protein compare
MPMX19_01918 -1.1 -1.7 tRNA-Ala compare
MPMX19_06044 -1.1 -1.9 hypothetical protein compare
MPMX19_01822 -1.1 -4.8 2-isopropylmalate synthase compare
MPMX19_00854 -1.1 -9.3 hypothetical protein compare
MPMX19_00906 -1.1 -7.7 Amidophosphoribosyltransferase compare
MPMX19_00335 -1.1 -1.8 Magnesium transport protein CorA compare
MPMX19_01084 -1.1 -4.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX19_02646 -1.0 -2.6 hypothetical protein compare
MPMX19_00976 -1.0 -2.0 ATP-dependent RNA helicase RhlE compare
MPMX19_01395 -1.0 -1.5 hypothetical protein compare
MPMX19_05997 -1.0 -1.6 hypothetical protein compare
MPMX19_02980 -1.0 -1.8 Hydrogen cyanide synthase subunit HcnA compare
MPMX19_06577 -1.0 -7.1 hypothetical protein compare
MPMX19_06644 -1.0 -8.3 GDP-mannose 4,6-dehydratase compare
MPMX19_01304 -1.0 -5.9 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_04199 -1.0 -5.7 Pseudaminic acid synthase compare
MPMX19_00794 -1.0 -2.6 Transcriptional activator protein CopR compare
MPMX19_06800 -1.0 -2.6 Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase compare
MPMX19_04115 -1.0 -1.7 Sensor histidine kinase RcsC compare
MPMX19_01297 -1.0 -1.8 hypothetical protein compare
MPMX19_00846 -1.0 -1.7 hypothetical protein compare
MPMX19_01998 -1.0 -4.1 3-isopropylmalate dehydratase large subunit compare
MPMX19_00152 -1.0 -1.1 hypothetical protein compare
MPMX19_05448 -1.0 -2.7 DNA-invertase hin compare
MPMX19_05725 -1.0 -1.9 hypothetical protein compare
MPMX19_04958 -0.9 -2.4 Methyl-accepting chemotaxis protein compare
MPMX19_00268 -0.9 -1.9 Transcriptional regulatory protein OmpR compare
MPMX19_00258 -0.9 -2.4 Protein ImuB compare
MPMX19_02806 -0.9 -2.2 HTH-type transcriptional regulator DmlR compare
MPMX19_06734 -0.9 -7.9 Alginate biosynthesis protein AlgA compare
MPMX19_00503 -0.9 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
MPMX19_04210 -0.9 -2.2 hypothetical protein compare
MPMX19_01494 -0.9 -4.8 Flagellar P-ring protein compare
MPMX19_05901 -0.9 -2.0 Motility protein B compare
MPMX19_01321 -0.9 -2.6 tRNA-Cys compare
MPMX19_05119 -0.9 -6.7 Glucose-6-phosphate 1-dehydrogenase compare
MPMX19_01249 -0.9 -1.4 Periplasmic serine endoprotease DegP compare
MPMX19_02852 -0.9 -3.6 hypothetical protein compare
MPMX19_04954 -0.9 -1.8 Putative hydro-lyase compare
MPMX19_00159 -0.9 -3.7 hypothetical protein compare
MPMX19_01111 -0.9 -2.3 Sensory histidine kinase/phosphatase NtrB compare
MPMX19_03599 -0.9 -3.3 2-amino-5-chloromuconic acid deaminase compare
MPMX19_06545 -0.9 -7.6 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
MPMX19_02951 -0.9 -1.7 Deoxyribose-phosphate aldolase 1 compare
MPMX19_04391 -0.9 -4.6 Homoserine O-acetyltransferase compare
MPMX19_05719 -0.9 -1.7 hypothetical protein compare
MPMX19_02737 -0.9 -3.9 Tryptophan synthase alpha chain compare
MPMX19_01961 -0.9 -3.1 Small heat shock protein IbpA compare
MPMX19_01718 -0.9 -1.9 Ribosomal large subunit pseudouridine synthase C compare
MPMX19_01423 -0.8 -2.1 hypothetical protein compare
MPMX19_01485 -0.8 -5.9 hypothetical protein compare
MPMX19_04205 -0.8 -2.2 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_05016 -0.8 -1.2 Sensor histidine kinase RcsC compare
MPMX19_05714 -0.8 -4.6 hypothetical protein compare
MPMX19_01777 -0.8 -2.1 2-aminoadipate transaminase compare
MPMX19_00166 -0.8 -1.5 hypothetical protein compare
MPMX19_00841 -0.8 -1.3 Holo-[acyl-carrier-protein] synthase compare
MPMX19_05658 -0.8 -2.2 hypothetical protein compare
MPMX19_02979 -0.8 -2.8 Hydrogen cyanide synthase subunit HcnB compare
MPMX19_01496 -0.8 -4.6 hypothetical protein compare
MPMX19_05023 -0.8 -1.3 hypothetical protein compare
MPMX19_00141 -0.8 -2.3 hypothetical protein compare
MPMX19_01597 -0.8 -1.5 23S rRNA (uridine(2479)-2'-O)-methyltransferase compare
MPMX19_04200 -0.8 -3.7 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase compare
MPMX19_02095 -0.8 -2.0 Ferric uptake regulation protein compare
MPMX19_01015 -0.8 -2.5 Anthranilate phosphoribosyltransferase compare
MPMX19_05355 -0.8 -2.7 Transcriptional regulator SlyA compare
MPMX19_04171 -0.8 -1.2 16S ribosomal RNA compare
MPMX19_02392 -0.8 -6.5 Aspartate/prephenate aminotransferase compare
MPMX19_00504 -0.8 -2.6 ATP-dependent Clp protease adapter protein ClpS compare
MPMX19_03798 -0.8 -2.3 hypothetical protein compare
MPMX19_04276 -0.8 -1.8 hypothetical protein compare
MPMX19_06437 -0.8 -2.1 DNA-invertase hin compare
MPMX19_01613 -0.8 -2.2 hypothetical protein compare
MPMX19_01826 -0.8 -3.9 Polyphenol oxidase compare
MPMX19_00061 -0.8 -2.0 L-lysine 2,3-aminomutase compare
MPMX19_05825 -0.8 -2.1 hypothetical protein compare
MPMX19_06544 -0.8 -5.6 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
MPMX19_00695 -0.8 -1.8 putative transcriptional regulatory protein compare
MPMX19_03803 -0.8 -2.1 hypothetical protein compare
MPMX19_06819 -0.8 -1.3 hypothetical protein compare
MPMX19_00148 -0.7 -2.2 hypothetical protein compare
MPMX19_00319 -0.7 -1.1 hypothetical protein compare
MPMX19_04948 -0.7 -1.5 HTH-type transcriptional regulator GltR compare
MPMX19_04869 -0.7 -2.8 DNA polymerase I compare
MPMX19_06914 -0.7 -1.8 Acyl-CoA dehydrogenase FadE27 compare
MPMX19_00129 -0.7 -0.8 hypothetical protein compare
MPMX19_00694 -0.7 -1.8 2',3'-cyclic-nucleotide 2'-phosphodiesterase compare
MPMX19_06303 -0.7 -2.8 hypothetical protein compare
MPMX19_03787 -0.7 -1.1 hypothetical protein compare
MPMX19_00625 -0.7 -3.4 hypothetical protein compare
MPMX19_03282 -0.7 -2.9 HTH-type transcriptional regulator McbR compare
MPMX19_05449 -0.7 -1.9 hypothetical protein compare
MPMX19_02607 -0.7 -2.6 hypothetical protein compare
MPMX19_02405 -0.7 -2.1 hypothetical protein compare
MPMX19_03694 -0.7 -1.0 hypothetical protein compare
MPMX19_00260 -0.7 -1.4 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_03634 -0.7 -2.0 Arginase compare
MPMX19_04053 -0.7 -2.4 Transcriptional regulatory protein OmpR compare
MPMX19_05271 -0.7 -1.6 hypothetical protein compare
MPMX19_03788 -0.7 -2.8 hypothetical protein compare
MPMX19_06470 -0.7 -1.8 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase compare
MPMX19_06271 -0.7 -4.6 hypothetical protein compare
MPMX19_01074 -0.7 -2.9 Molybdopterin molybdenumtransferase compare
MPMX19_00748 -0.7 -1.8 Organic hydroperoxide resistance transcriptional regulator compare
MPMX19_05967 -0.7 -2.4 D-erythritol 1-phosphate dehydrogenase compare
MPMX19_01523 -0.7 -2.4 Polar-differentiation response regulator DivK compare
MPMX19_02378 -0.7 -1.8 hypothetical protein compare
MPMX19_05921 -0.7 -1.3 hypothetical protein compare
MPMX19_01939 -0.7 -2.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
MPMX19_03636 -0.7 -2.2 Octopine permease ATP-binding protein P compare
MPMX19_04204 -0.7 -3.8 D-alanine--D-alanyl carrier protein ligase compare
MPMX19_03005 -0.7 -1.3 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha compare
MPMX19_02532 -0.7 -1.6 Cytochrome c-type biogenesis protein CcmE compare
MPMX19_01353 -0.7 -1.8 hypothetical protein compare
MPMX19_04610 -0.7 -1.3 putative enoyl-CoA hydratase 1 compare
MPMX19_03772 -0.7 -2.3 hypothetical protein compare
MPMX19_04734 -0.7 -1.7 5,6,7,8-tetrahydromethanopterin hydro-lyase compare
MPMX19_00543 -0.7 -1.8 Molybdenum cofactor guanylyltransferase compare
MPMX19_00132 -0.7 -2.6 hypothetical protein compare
MPMX19_01270 -0.6 -2.4 L-threonine ammonia-lyase compare
MPMX19_06969 -0.6 -1.9 hypothetical protein compare
MPMX19_04940 -0.6 -3.8 Histidine ammonia-lyase compare
MPMX19_03722 -0.6 -1.5 hypothetical protein compare
MPMX19_03211 -0.6 -3.2 hypothetical protein compare
MPMX19_03851 -0.6 -2.5 hypothetical protein compare
MPMX19_02613 -0.6 -1.5 hypothetical protein compare
MPMX19_01448 -0.6 -2.0 hypothetical protein compare
MPMX19_00036 -0.6 -1.9 hypothetical protein compare
MPMX19_05361 -0.6 -2.8 CRP-like cAMP-activated global transcriptional regulator compare
MPMX19_04365 -0.6 -2.6 Thymidine phosphorylase compare
MPMX19_01149 -0.6 -3.2 Polyphosphate kinase compare
MPMX19_01062 -0.6 -1.7 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_05727 -0.6 -3.2 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_05352 -0.6 -1.5 putative cysteine-rich protein YhjQ compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum across organisms