Experiment set1S53 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_05581 +1.0 1.8 hypothetical protein compare
MPMX19_06490 +1.0 2.1 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_02937 +0.9 1.8 hypothetical protein compare
MPMX19_01059 +0.9 1.2 hypothetical protein compare
MPMX19_03109 +0.9 3.7 hypothetical protein compare
MPMX19_03195 +0.9 2.5 hypothetical protein compare
MPMX19_04669 +0.9 2.6 Glucose 1-dehydrogenase compare
MPMX19_02801 +0.9 2.4 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_02424 +0.9 3.2 hypothetical protein compare
MPMX19_04549 +0.8 3.8 L-cystine-binding protein FliY compare
MPMX19_04246 +0.8 2.6 hypothetical protein compare
MPMX19_04743 +0.8 3.1 Formyltransferase/hydrolase complex subunit D compare
MPMX19_06420 +0.8 2.6 hypothetical protein compare
MPMX19_01864 +0.8 1.8 Regulatory protein AtoC compare
MPMX19_06197 +0.8 1.7 hypothetical protein compare
MPMX19_02514 +0.7 1.1 hypothetical protein compare
MPMX19_01454 +0.7 2.3 hypothetical protein compare
MPMX19_06202 +0.7 1.9 hypothetical protein compare
MPMX19_05176 +0.7 1.5 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase compare
MPMX19_03219 +0.7 3.5 putative ABC transporter ATP-binding protein YheS compare
MPMX19_01978 +0.7 1.8 hypothetical protein compare
MPMX19_00066 +0.7 1.6 hypothetical protein compare
MPMX19_00212 +0.7 5.5 Nitrogen fixation regulation protein FixK compare
MPMX19_06353 +0.7 1.3 hypothetical protein compare
MPMX19_04647 +0.7 2.2 hypothetical protein compare
MPMX19_06385 +0.6 2.7 hypothetical protein compare
MPMX19_06267 +0.6 2.7 hypothetical protein compare
MPMX19_04842 +0.6 2.0 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase compare
MPMX19_05314 +0.6 1.8 hypothetical protein compare
MPMX19_02792 +0.6 2.6 HTH-type transcriptional regulator KipR compare
MPMX19_00334 +0.6 1.8 hypothetical protein compare
MPMX19_04323 +0.6 2.2 Segregation and condensation protein B compare
MPMX19_02987 +0.6 1.9 hypothetical protein compare
MPMX19_06526 +0.6 2.8 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_04271 +0.6 1.9 Response regulator rcp1 compare
MPMX19_00544 +0.6 1.6 hypothetical protein compare
MPMX19_00208 +0.6 1.5 hypothetical protein compare
MPMX19_04579 +0.6 1.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX19_01983 +0.6 2.8 ADP-dependent (S)-NAD(P)H-hydrate dehydratase compare
MPMX19_02611 +0.6 2.4 hypothetical protein compare
MPMX19_05534 +0.6 1.7 DNA gyrase inhibitor YacG compare
MPMX19_01394 +0.6 1.0 hypothetical protein compare
MPMX19_04390 +0.6 1.6 hypothetical protein compare
MPMX19_06770 +0.6 2.8 NAD-dependent glycerol dehydrogenase compare
MPMX19_06269 +0.5 3.4 IS110 family transposase ISHne4 compare
MPMX19_03073 +0.5 1.4 hypothetical protein compare
MPMX19_06917 +0.5 2.1 HTH-type transcriptional regulator PgrR compare
MPMX19_04826 +0.5 2.4 hypothetical protein compare
MPMX19_03868 +0.5 1.7 Xylitol-binding protein compare
MPMX19_00044 +0.5 1.8 hypothetical protein compare
MPMX19_06579 +0.5 2.0 Carnitine monooxygenase oxygenase subunit compare
MPMX19_01719 +0.5 1.2 Putative fluoride ion transporter CrcB compare
MPMX19_03924 +0.5 1.8 hypothetical protein compare
MPMX19_01717 +0.5 2.3 Pyrophosphatase PpaX compare
MPMX19_04569 +0.5 1.7 Anti-sigma-F factor NrsF compare
MPMX19_05623 +0.5 2.5 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_02536 +0.5 1.9 hypothetical protein compare
MPMX19_01113 +0.5 1.5 Adaptive-response sensory-kinase SasA compare
MPMX19_01153 +0.5 1.3 hypothetical protein compare
MPMX19_00190 +0.5 1.9 hypothetical protein compare
MPMX19_04531 +0.5 1.6 hypothetical protein compare
MPMX19_04726 +0.5 1.6 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_05005 +0.5 1.8 hypothetical protein compare
MPMX19_05430 +0.5 1.6 HTH-type transcriptional regulator DmlR compare
MPMX19_05047 +0.5 2.2 Glycine cleavage system transcriptional activator compare
MPMX19_02181 +0.5 2.0 hypothetical protein compare
MPMX19_04570 +0.5 1.9 ECF RNA polymerase sigma factor SigF compare
MPMX19_05089 +0.5 2.2 Acetyl-CoA acetyltransferase compare
MPMX19_06156 +0.5 1.7 hypothetical protein compare
MPMX19_05773 +0.5 1.7 Putative 1,2-phenylacetyl-CoA epoxidase, subunit D compare
MPMX19_05229 +0.5 2.1 ECF RNA polymerase sigma factor RpoE compare
MPMX19_00839 +0.5 1.4 hypothetical protein compare
MPMX19_05877 +0.5 3.0 Glutamine transport ATP-binding protein GlnQ compare
MPMX19_02608 +0.5 2.2 hypothetical protein compare
MPMX19_03768 +0.5 1.2 hypothetical protein compare
MPMX19_01620 +0.5 2.8 hypothetical protein compare
MPMX19_00718 +0.5 1.2 hypothetical protein compare
MPMX19_03450 +0.5 1.1 hypothetical protein compare
MPMX19_02094 +0.5 1.2 hypothetical protein compare
MPMX19_01358 +0.5 1.6 Electron transfer flavoprotein subunit alpha compare
MPMX19_05196 +0.4 2.3 Alpha-ketoglutarate-dependent taurine dioxygenase compare
MPMX19_05205 +0.4 1.6 hypothetical protein compare
MPMX19_03374 +0.4 2.3 Alpha-hemolysin translocation ATP-binding protein HlyB compare
MPMX19_06690 +0.4 2.3 hypothetical protein compare
MPMX19_06456 +0.4 0.7 hypothetical protein compare
MPMX19_04825 +0.4 1.2 hypothetical protein compare
MPMX19_03637 +0.4 2.5 Nopaline-binding periplasmic protein compare
MPMX19_03728 +0.4 1.1 hypothetical protein compare
MPMX19_00182 +0.4 1.1 hypothetical protein compare
MPMX19_03676 +0.4 1.5 hypothetical protein compare
MPMX19_03014 +0.4 2.2 Transcriptional activatory protein AadR compare
MPMX19_04767 +0.4 2.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_03265 +0.4 2.7 Spermidine/putrescine import ATP-binding protein PotA compare
MPMX19_04986 +0.4 1.5 hypothetical protein compare
MPMX19_04731 +0.4 2.3 hypothetical protein compare
MPMX19_01622 +0.4 2.3 hypothetical protein compare
MPMX19_06677 +0.4 1.2 hypothetical protein compare
MPMX19_03026 +0.4 2.0 Fructose import ATP-binding protein FrcA compare
MPMX19_01621 +0.4 2.5 hypothetical protein compare
MPMX19_03862 +0.4 1.4 hypothetical protein compare
MPMX19_05034 +0.4 1.2 ATP synthase subunit c compare
MPMX19_03123 +0.4 0.8 Citrate lyase acyl carrier protein compare
MPMX19_00085 +0.4 1.8 hypothetical protein compare
MPMX19_02850 +0.4 1.0 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
MPMX19_06929 +0.4 1.1 hypothetical protein compare
MPMX19_06518 +0.4 1.7 Methionine import system permease protein MetP compare
MPMX19_02085 +0.4 1.3 hypothetical protein compare
MPMX19_03194 +0.4 1.2 hypothetical protein compare
MPMX19_04211 +0.4 1.7 hypothetical protein compare
MPMX19_01609 +0.4 1.1 hypothetical protein compare
MPMX19_05203 +0.4 1.4 hypothetical protein compare
MPMX19_01119 +0.4 1.3 hypothetical protein compare
MPMX19_01050 +0.4 1.2 hypothetical protein compare
MPMX19_01141 +0.4 1.8 hypothetical protein compare
MPMX19_06964 +0.4 1.4 HTH-type transcriptional regulator KipR compare
MPMX19_03823 +0.4 1.4 hypothetical protein compare
MPMX19_05505 +0.4 1.4 Leucine-responsive regulatory protein compare
MPMX19_02787 +0.4 1.5 (R)-benzylsuccinyl-CoA dehydrogenase compare
MPMX19_01075 +0.4 0.8 Molybdopterin synthase sulfur carrier subunit compare
MPMX19_05393 +0.4 1.2 hypothetical protein compare
MPMX19_05622 +0.4 2.9 Sensor histidine kinase RegB compare
MPMX19_01956 +0.4 1.7 hypothetical protein compare
MPMX19_03578 +0.4 1.3 HTH-type transcriptional regulator PgrR compare
MPMX19_02063 +0.4 1.6 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_02021 +0.4 2.1 Anti-sigma-E factor ChrR compare
MPMX19_06867 +0.4 2.8 Sialic acid transporter NanT compare
MPMX19_06537 +0.4 2.3 NADH-dependent FMN reductase SfnF compare
MPMX19_02733 +0.4 2.2 Regulatory protein LuxO compare
MPMX19_06260 +0.4 1.6 hypothetical protein compare
MPMX19_03340 +0.4 1.4 hypothetical protein compare
MPMX19_06979 +0.4 1.1 hypothetical protein compare
MPMX19_04788 +0.4 2.6 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_04682 +0.4 0.7 hypothetical protein compare
MPMX19_00716 +0.4 2.3 Hydrogenase maturation factor HypD compare
MPMX19_03582 +0.4 1.6 Response regulator protein TmoT compare
MPMX19_03963 +0.4 2.2 hypothetical protein compare
MPMX19_06107 +0.4 1.7 hypothetical protein compare
MPMX19_00207 +0.4 2.0 hypothetical protein compare
MPMX19_04724 +0.4 1.7 hypothetical protein compare
MPMX19_00423 +0.4 1.6 (E)-2-((N-methylformamido)methylene)succinate hydrolase compare
MPMX19_03127 +0.4 0.9 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase compare
MPMX19_01196 +0.4 1.6 hypothetical protein compare
MPMX19_06696 +0.4 0.9 hypothetical protein compare
MPMX19_02804 +0.4 0.9 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial compare
MPMX19_03547 +0.4 1.4 putative oxidoreductase compare
MPMX19_05575 +0.4 1.5 hypothetical protein compare
MPMX19_05328 +0.4 1.5 hypothetical protein compare
MPMX19_02714 +0.4 1.3 hypothetical protein compare
MPMX19_03352 +0.4 1.7 hypothetical protein compare
MPMX19_00112 +0.4 1.5 Multidrug transporter EmrE compare
MPMX19_01426 +0.4 0.5 hypothetical protein compare
MPMX19_06510 +0.4 1.1 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_02472 +0.4 1.7 hypothetical protein compare
MPMX19_06187 +0.4 1.9 hypothetical protein compare
MPMX19_03313 +0.4 2.3 Ureidoglycolate lyase compare
MPMX19_06464 +0.4 1.0 Tryptophan synthase beta chain compare
MPMX19_05342 +0.4 1.5 hypothetical protein compare
MPMX19_00186 +0.4 0.7 hypothetical protein compare
MPMX19_04727 +0.4 1.5 hypothetical protein compare
MPMX19_06853 +0.4 1.1 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_03292 +0.4 1.1 hypothetical protein compare
MPMX19_02634 +0.4 1.5 DNA-binding transcriptional regulator BolA compare
MPMX19_01128 +0.4 2.0 hypothetical protein compare
MPMX19_04668 +0.4 1.3 HTH-type transcriptional regulator DmlR compare
MPMX19_03114 +0.4 1.2 hypothetical protein compare
MPMX19_00223 +0.4 2.0 Zinc-type alcohol dehydrogenase-like protein compare
MPMX19_05169 +0.4 2.6 Vitamin B12-binding protein compare
MPMX19_04670 +0.4 1.5 hypothetical protein compare
MPMX19_06776 +0.4 1.5 hypothetical protein compare
MPMX19_01125 +0.4 0.7 hypothetical protein compare
MPMX19_06926 +0.4 1.4 hypothetical protein compare
MPMX19_06521 +0.4 1.6 Putative aliphatic sulfonates-binding protein compare
MPMX19_06355 +0.4 1.3 hypothetical protein compare
MPMX19_05656 +0.4 0.7 HTH-type transcriptional activator RhaR compare
MPMX19_04732 +0.4 1.7 hypothetical protein compare
MPMX19_03474 +0.4 1.9 hypothetical protein compare
MPMX19_00966 +0.3 1.7 ATP-dependent zinc metalloprotease FtsH compare
MPMX19_03494 +0.3 1.7 Regulatory protein AtoC compare
MPMX19_03571 +0.3 1.1 hypothetical protein compare
MPMX19_06062 +0.3 1.8 hypothetical protein compare
MPMX19_03331 +0.3 1.4 hypothetical protein compare
MPMX19_05082 +0.3 1.2 hypothetical protein compare
MPMX19_00285 +0.3 2.4 hypothetical protein compare
MPMX19_00414 +0.3 0.8 Pyruvate dehydrogenase complex repressor compare
MPMX19_03198 +0.3 1.5 hypothetical protein compare
MPMX19_06877 +0.3 1.5 hypothetical protein compare
MPMX19_01383 +0.3 1.9 putative NTE family protein compare
MPMX19_05324 +0.3 2.4 hypothetical protein compare
MPMX19_04088 +0.3 1.4 Signal recognition particle 54 kDa protein compare
MPMX19_06143 +0.3 1.6 Endonuclease III compare
MPMX19_06661 +0.3 1.7 hypothetical protein compare
MPMX19_01330 +0.3 1.1 3-mercaptopyruvate sulfurtransferase compare
MPMX19_02774 +0.3 1.3 hypothetical protein compare
MPMX19_00822 +0.3 2.0 Divalent metal cation transporter MntH compare
MPMX19_04037 +0.3 1.9 5-dehydro-2-deoxygluconokinase compare
MPMX19_05231 +0.3 1.7 1,2-epoxyphenylacetyl-CoA isomerase compare
MPMX19_01101 +0.3 0.9 hypothetical protein compare
MPMX19_05946 +0.3 2.0 Nitrate import ATP-binding protein NrtD compare
MPMX19_05178 +0.3 1.6 Alkanesulfonate monooxygenase compare
MPMX19_01480 +0.3 1.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum across organisms