Experiment set1S53 for Acinetobacter baumannii LAC-4

MHII_biocarbonate_Chelated; 30C

Group: mhii_biocarbonate_chelated temperature
Media: MHII_biocarbonate_Chelated
Culturing: Abaumannii_LAC4_ML3, tube, Aerobic, at 30 (C), shaken=200 rpm
By: Luna lab on 5/20/25
Media components: 17.5 g/L Tryptone, 3 g/L Beef extract, 1.5 g/L Starch, 2 g/L Sodium bicarbonate

Specific Phenotypes

For 1 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Pyruvate metabolism I: anaplerotic reactions, PEP	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pyruvate metabolism
• Biosynthesis of phenylpropanoids
• Biosynthesis of terpenoids and steroids
• Biosynthesis of alkaloids derived from terpenoid and polyketide

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-malate degradation II	1	1	1
malate/L-aspartate shuttle pathway	2	2	1
L-carnitine degradation II	3	3	1
chitin deacetylation	4	4	1
C4 photosynthetic carbon assimilation cycle, NAD-ME type	11	8	2
glyoxylate cycle	6	6	1
TCA cycle VIII (Chlamydia)	6	5	1
methylgallate degradation	6	2	1
gluconeogenesis I	13	12	2
anaerobic energy metabolism (invertebrates, cytosol)	7	6	1
incomplete reductive TCA cycle	7	4	1
pyruvate fermentation to propanoate I	7	2	1
protocatechuate degradation I (meta-cleavage pathway)	8	3	1
superpathway of anaerobic energy metabolism (invertebrates)	17	12	2
TCA cycle V (2-oxoglutarate synthase)	9	8	1
TCA cycle II (plants and fungi)	9	7	1
TCA cycle IV (2-oxoglutarate decarboxylase)	9	7	1
TCA cycle I (prokaryotic)	10	9	1
TCA cycle III (animals)	10	7	1
anaerobic energy metabolism (invertebrates, mitochondrial)	10	6	1
superpathway of vanillin and vanillate degradation	10	4	1
reductive TCA cycle I	11	7	1
L-glutamate degradation VIII (to propanoate)	11	2	1
superpathway of glyoxylate bypass and TCA	12	11	1
gluconeogenesis III	12	10	1
reductive TCA cycle II	12	5	1
syringate degradation	12	3	1
formaldehyde assimilation I (serine pathway)	13	7	1
(S)-lactate fermentation to propanoate, acetate and hydrogen	13	5	1
superpathway of glyoxylate cycle and fatty acid degradation	14	11	1
mixed acid fermentation	16	11	1
methylaspartate cycle	19	10	1
superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle	22	17	1
superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass	26	21	1
Methanobacterium thermoautotrophicum biosynthetic metabolism	56	19	1