Experiment set1S529 for Alteromonas macleodii MIT1002

Compare to:

Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 2

200 most important genes:

  gene name fitness t score description  
MIT1002_03690 -8.3 -5.8 DnaK suppressor protein compare
MIT1002_01263 -8.0 -5.0 7-cyano-7-deazaguanine synthase compare
MIT1002_02636 -7.7 -7.5 Imidazole glycerol phosphate synthase subunit HisH compare
MIT1002_02638 -7.5 -5.2 Imidazole glycerol phosphate synthase subunit HisF compare
MIT1002_02993 -7.4 -5.1 D-3-phosphoglycerate dehydrogenase compare
MIT1002_02634 -7.4 -5.1 Histidinol-phosphate aminotransferase compare
MIT1002_00467 -7.3 -8.7 Argininosuccinate lyase compare
MIT1002_00466 -7.2 -8.6 Amino-acid acetyltransferase compare
MIT1002_02708 -7.2 -5.0 Phosphoserine phosphatase compare
MIT1002_00485 -7.1 -8.5 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
MIT1002_01266 -7.1 -10.8 Asparagine synthetase B [glutamine-hydrolyzing] compare
MIT1002_03086 -7.1 -15.1 Aspartokinase I/homoserine dehydrogenase I compare
MIT1002_00843 -7.1 -4.9 hypothetical protein compare
MIT1002_03084 -7.0 -10.7 Threonine synthase compare
MIT1002_00468 -7.0 -15.6 Argininosuccinate synthase compare
MIT1002_00504 -7.0 -9.2 Acetolactate synthase isozyme 3 small subunit compare
MIT1002_00160 -6.9 -4.8 Diaminopimelate decarboxylase compare
MIT1002_02637 -6.9 -4.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MIT1002_03062 -6.9 -4.8 Pyrroline-5-carboxylate reductase compare
MIT1002_01264 -6.8 -4.7 7-carboxy-7-deazaguanine synthase compare
MIT1002_01428 -6.8 -4.7 Anthranilate synthase component II compare
MIT1002_01984 -6.8 -6.6 queuosine biosynthesis protein QueD compare
MIT1002_04045 -6.7 -12.3 Ketol-acid reductoisomerase compare
MIT1002_01112 -6.7 -8.1 Homoserine O-succinyltransferase compare
MIT1002_02633 -6.6 -18.7 Histidinol dehydrogenase compare
MIT1002_02266 -6.6 -11.9 Methionine gamma-lyase compare
MIT1002_02831 -6.6 -17.0 Isocitrate lyase compare
MIT1002_00522 -6.5 -9.9 N5-carboxyaminoimidazole ribonucleotide synthase compare
MIT1002_01467 -6.5 -18.2 Carbamoyl-phosphate synthase large chain compare
MIT1002_01466 -6.4 -9.8 Carbamoyl-phosphate synthase small chain compare
MIT1002_00948 -6.4 -18.1 3-isopropylmalate dehydrogenase compare
MIT1002_01430 -6.3 -4.4 Anthranilate synthase component 1 compare
MIT1002_03085 -6.3 -6.2 Homoserine kinase compare
MIT1002_00949 -6.3 -21.2 2-isopropylmalate synthase compare
MIT1002_03130 -6.3 -9.6 2-methylcitrate synthase compare
MIT1002_02833 -6.3 -25.9 Malate synthase G compare
MIT1002_03179 -6.2 -16.1 Cystathionine beta-lyase PatB compare
MIT1002_02220 -6.2 -13.8 Phosphoribosylglycinamide formyltransferase compare
MIT1002_00471 -6.2 -22.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
MIT1002_03139 -6.1 -29.5 Glutamate synthase [NADPH] large chain precursor compare
MIT1002_02635 -6.1 -14.8 Histidine biosynthesis bifunctional protein HisB compare
MIT1002_04041 -6.1 -15.2 Dihydroxy-acid dehydratase compare
MIT1002_00503 -6.0 -17.0 Acetolactate synthase isozyme 3 large subunit compare
MIT1002_03961 -6.0 -21.1 Phosphoribosylamine--glycine ligase compare
MIT1002_00988 -5.9 -9.9 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
MIT1002_00947 -5.9 -18.7 3-isopropylmalate dehydratase large subunit compare
MIT1002_00423 -5.8 -4.0 Aspartate carbamoyltransferase catalytic chain compare
MIT1002_00161 -5.8 -4.3 putative small periplasmic lipoprotein compare
MIT1002_02632 -5.7 -8.7 ATP phosphoribosyltransferase compare
MIT1002_04092 -5.7 -3.9 putative type I restriction enzymeP M protein compare
MIT1002_04040 -5.7 -21.4 L-threonine dehydratase biosynthetic IlvA compare
MIT1002_02184 -5.6 -2.6 Orotidine 5'-phosphate decarboxylase compare
MIT1002_01027 -5.6 -29.4 Phosphoribosylformylglycinamidine synthase compare
MIT1002_02035 -5.5 -2.3 Dihydroorotate dehydrogenase (quinone) compare
MIT1002_01429 -5.5 -6.7 Anthranilate synthase component II compare
MIT1002_00377 -5.5 -12.7 Branched-chain-amino-acid aminotransferase 2 compare
MIT1002_01035 -5.5 -4.7 anti-sigma28 factor FlgM compare
MIT1002_02832 -5.5 -10.4 Nodulation protein D 2 compare
MIT1002_02524 -5.5 -18.9 Amidophosphoribosyltransferase compare
MIT1002_00437 -5.4 -15.6 Succinylornithine transaminase/acetylornithine aminotransferase compare
MIT1002_03516 -5.3 -16.8 Acetyl-coenzyme A synthetase compare
MIT1002_01885 -5.2 -14.1 Gamma-glutamyl phosphate reductase compare
MIT1002_01345 -5.2 -2.5 tRNA-Ser compare
MIT1002_03488 -5.2 -3.6 Na(+)-translocating NADH-quinone reductase subunit A compare
MIT1002_01427 -5.2 -4.1 Tryptophan biosynthesis protein TrpCF compare
MIT1002_03140 -5.2 -16.5 Glutamate synthase [NADPH] small chain compare
MIT1002_01129 -5.0 -3.6 Carbon storage regulator compare
MIT1002_00469 -5.0 -12.7 Ornithine carbamoyltransferase compare
MIT1002_02394 -4.9 -11.8 Glyceraldehyde-3-phosphate dehydrogenase compare
MIT1002_01979 -4.8 -13.1 Carnitinyl-CoA dehydratase compare
MIT1002_02639 -4.8 -11.0 Phosphoribosyl-ATP pyrophosphatase compare
MIT1002_02219 -4.8 -15.1 Phosphoribosylformylglycinamidine cyclo-ligase compare
MIT1002_01925 -4.8 -1.9 hypothetical protein compare
MIT1002_03978 -4.8 -3.3 General secretion pathway protein F compare
MIT1002_03096 -4.8 -15.7 Isocitrate dehydrogenase kinase/phosphatase compare
MIT1002_00946 -4.7 -7.1 3-isopropylmalate dehydratase small subunit 1 compare
MIT1002_03484 -4.7 -2.2 Na(+)-translocating NADH-quinone reductase subunit E compare
MIT1002_01295 -4.7 -7.5 Inner membrane protein YpjD compare
MIT1002_03979 -4.7 -1.9 Pullulanase secretion protein PulG compare
MIT1002_02760 -4.6 -6.2 ATP-dependent Clp protease proteolytic subunit precursor compare
MIT1002_03977 -4.6 -3.2 Type II traffic warden ATPase compare
MIT1002_00470 -4.6 -7.6 Acetylglutamate kinase compare
MIT1002_03483 -4.6 -2.1 Na(+)-translocating NADH-quinone reductase subunit F compare
MIT1002_00884 -4.6 -3.3 hypothetical protein compare
MIT1002_00115 -4.5 -2.1 Iron(III)-binding periplasmic protein compare
MIT1002_03805 -4.5 -2.5 hypothetical protein compare
MIT1002_03980 -4.5 -3.1 General secretion pathway protein H compare
MIT1002_03485 -4.5 -2.6 Na(+)-translocating NADH-quinone reductase subunit D compare
MIT1002_03982 -4.4 -2.7 PilD-dependent protein PddD compare
MIT1002_01163 -4.4 -2.5 hypothetical protein compare
MIT1002_00521 -4.3 -6.5 N5-carboxyaminoimidazole ribonucleotide mutase compare
MIT1002_02406 -4.3 -2.9 6-phosphogluconolactonase compare
MIT1002_02188 -4.3 -4.4 Integration host factor subunit beta compare
MIT1002_02702 -4.3 -12.8 Serine hydroxymethyltransferase compare
MIT1002_03981 -4.3 -2.0 Putative general secretion pathway protein I compare
MIT1002_01457 -4.3 -1.4 Heat shock protein 70 compare
MIT1002_00189 -4.2 -14.6 Galactokinase compare
MIT1002_00816 -4.2 -4.0 Cytochrome c1 precursor compare
MIT1002_03976 -4.2 -2.9 Pullulanase secretion envelope PulD compare
MIT1002_00117 -4.2 -2.4 Maltose/maltodextrin import ATP-binding protein MalK compare
MIT1002_03486 -4.2 -2.9 Na(+)-translocating NADH-quinone reductase subunit C compare
MIT1002_01544 -4.1 -16.2 D-alanyl-D-alanine carboxypeptidase compare
MIT1002_04044 -4.1 -16.7 HTH-type transcriptional regulator GltC compare
MIT1002_00074 -4.1 -3.4 tRNA-Arg compare
MIT1002_02972 -4.0 -9.2 Glycine cleavage system H protein compare
MIT1002_03983 -4.0 -2.8 Putative general secretion pathway protein K compare
MIT1002_01638 -4.0 -5.2 Integration host factor subunit alpha compare
MIT1002_03885 -4.0 -11.0 NADH dehydrogenase compare
MIT1002_02991 -4.0 -8.8 putative 5-formyltetrahydrofolate cyclo-ligase compare
MIT1002_01168 -4.0 -2.1 Flp pilus assembly protein TadD, contains TPR repeats compare
MIT1002_00826 -3.9 -5.2 Ribosome hibernation promoting factor compare
MIT1002_04093 -3.9 -1.3 Type I restriction modification DNA specificity domain protein compare
MIT1002_04050 -3.9 -1.3 hypothetical protein compare
MIT1002_00188 -3.9 -10.6 Galactose-1-phosphate uridylyltransferase compare
MIT1002_01435 -3.8 -2.0 Ribosomal large subunit pseudouridine synthase B compare
MIT1002_00424 -3.7 -9.7 Solvent efflux pump srpABC operon corepressor compare
MIT1002_03481 -3.6 -2.8 hypothetical protein compare
MIT1002_02810 -3.6 -11.4 preprotein translocase subunit SecF compare
MIT1002_00814 -3.6 -6.1 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
MIT1002_03984 -3.5 -2.4 General secretion pathway protein L compare
MIT1002_00235 -3.5 -3.3 Glycogen synthase compare
MIT1002_02429 -3.5 -14.3 Glucose-resistance amylase regulator compare
MIT1002_00116 -3.4 -2.0 Spermidine/putrescine transport system permease protein PotB compare
MIT1002_03487 -3.4 -4.4 Na(+)-translocating NADH-quinone reductase subunit B compare
MIT1002_01316 -3.4 -8.7 P-protein compare
MIT1002_03331 -3.3 -9.3 D-lactate dehydrogenase compare
MIT1002_04120 -3.3 -1.5 F0F1 ATP synthase subunit I compare
MIT1002_01736 -3.3 -12.7 Aminodeoxychorismate lyase compare
MIT1002_03323 -3.2 -12.6 Sensor histidine kinase LiaS compare
MIT1002_04135 -3.2 -13.9 ParB/RepB/Spo0J family partition protein compare
MIT1002_04134 -3.1 -15.1 Sporulation initiation inhibitor protein soj compare
MIT1002_00320 -3.1 -2.2 Protein of unknown function, DUF compare
MIT1002_03055 -3.1 -8.2 Glutathione synthetase compare
MIT1002_02404 -3.1 -8.5 Glucokinase compare
MIT1002_04124 -3.1 -3.0 Glucose-inhibited division protein A compare
MIT1002_02807 -3.1 -4.7 Inositol-1-monophosphatase compare
MIT1002_00138 -3.1 -12.1 Histone deacetylase-like amidohydrolase compare
MIT1002_04056 -3.1 -10.9 Glutamate 5-kinase compare
MIT1002_00114 -3.0 -2.6 hypothetical protein compare
MIT1002_03985 -3.0 -4.7 General secretion pathway protein M compare
MIT1002_02785 -3.0 -9.5 Outer membrane protein assembly factor BamB precursor compare
MIT1002_00670 -3.0 -2.0 Outer membrane protein TolC precursor compare
MIT1002_02757 -3.0 -12.0 Lon protease compare
MIT1002_00827 -3.0 -4.5 RNA polymerase sigma-54 factor 2 compare
MIT1002_03015 -2.9 -8.5 aspartoacylase compare
MIT1002_03321 -2.9 -11.8 Aldehyde dehydrogenase B compare
MIT1002_00815 -2.8 -3.6 Cytochrome b/c1 compare
MIT1002_02812 -2.8 -3.6 preprotein translocase subunit YajC compare
MIT1002_02306 -2.8 -9.1 Glutamate-pyruvate aminotransferase AlaA compare
MIT1002_03137 -2.8 -9.6 Aerobic respiration control sensor protein ArcB compare
MIT1002_00233 -2.7 -4.3 Dye resistance protein compare
MIT1002_00076 -2.7 -2.4 transcriptional regulator, y4mF family compare
MIT1002_02405 -2.7 -7.6 Phosphogluconate dehydratase compare
MIT1002_00872 -2.7 -11.0 Polyphosphate kinase compare
MIT1002_02759 -2.7 -4.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MIT1002_02811 -2.6 -12.7 preprotein translocase subunit SecD compare
MIT1002_00877 -2.6 -5.3 Repressor protein PhoU compare
MIT1002_03003 -2.6 -5.8 Pyruvate dehydrogenase E1 component compare
MIT1002_00970 -2.5 -8.1 UDP-glucose 4-epimerase compare
MIT1002_03785 -2.5 -11.1 Modulator of FtsH protease HflC compare
MIT1002_01222 -2.5 -2.2 Glutamate--cysteine ligase compare
MIT1002_03908 -2.4 -7.2 NAD(P) transhydrogenase subunit alpha compare
MIT1002_03909 -2.4 -9.0 NAD(P) transhydrogenase subunit alpha part 1 compare
MIT1002_03109 -2.4 -4.9 Saccharopine dehydrogenase compare
MIT1002_03110 -2.4 -6.1 Carboxynorspermidine/carboxyspermidine decarboxylase compare
MIT1002_03907 -2.4 -9.9 NAD(P) transhydrogenase subunit beta compare
MIT1002_02136 -2.3 -5.7 hypothetical protein compare
MIT1002_03786 -2.3 -9.8 Modulator of FtsH protease HflK compare
MIT1002_01777 -2.3 -4.5 chromosome segregation protein SMC compare
MIT1002_00111 -2.3 -6.9 ATP-dependent DNA helicase RecG compare
MIT1002_01131 -2.3 -1.0 tRNA-Arg compare
MIT1002_02971 -2.3 -14.5 Glycine dehydrogenase [decarboxylating] compare
MIT1002_02400 -2.3 -11.0 4-alpha-glucanotransferase compare
MIT1002_02973 -2.2 -8.9 Aminomethyltransferase compare
MIT1002_00844 -2.2 -5.7 AFG1-like ATPase compare
MIT1002_00454 -2.2 -4.5 Penicillin-binding protein 1A compare
MIT1002_03686 -2.2 -1.6 hypothetical protein compare
MIT1002_03539 -2.2 -2.9 Bifunctional protein BirA compare
MIT1002_01917 -2.2 -4.2 hypothetical protein compare
MIT1002_00436 -2.1 -3.6 Arginine N-succinyltransferase subunit beta compare
MIT1002_02129 -2.1 -5.0 hypothetical protein compare
MIT1002_03698 -2.1 -5.7 tRNA (guanine-N(7)-)-methyltransferase compare
MIT1002_01143 -2.1 -3.4 Phage shock protein A compare
MIT1002_03771 -2.1 -6.9 N-acetylglucosamine repressor compare
MIT1002_02286 -2.1 -9.6 Electron transfer flavoprotein large subunit compare
MIT1002_03114 -2.1 -4.8 Lipoprotein activator of PBP from the outer membrane A compare
MIT1002_02013 -2.1 -8.1 2-oxoisovalerate dehydrogenase subunit beta compare
MIT1002_03567 -2.0 -7.1 mycofactocin system glycosyltransferase compare
MIT1002_02581 -2.0 -3.3 Disulfide oxidoreductase compare
MIT1002_00351 -2.0 -9.8 Degradation activator compare
MIT1002_01763 -2.0 -2.6 Putative pterin-4-alpha-carbinolamine dehydratase compare
MIT1002_03806 -2.0 -4.5 hypothetical protein compare
MIT1002_01832 -2.0 -2.5 Cold shock-like protein CspD compare
MIT1002_02014 -2.0 -10.9 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex compare
MIT1002_00883 -1.9 -3.6 putative transmembrane transcriptional regulator (anti-sigma factor) compare
MIT1002_01132 -1.9 -1.1 tRNA-Arg compare
MIT1002_01011 -1.9 -4.2 Regulator of sigma E protease compare
MIT1002_04036 -1.9 -3.5 LexA repressor compare
MIT1002_02681 -1.9 -6.6 Transcriptional activator ChrR compare
MIT1002_00809 -1.9 -10.3 Sensor protein QseC compare


Specific Phenotypes

None in this experiment

For Alteromonas macleodii MIT1002 in mixed community experiments

For mixed community Mixed culture; Prochlorococcus marinus str. MIT9313 10:1 starting OD to HP15 across organisms