Experiment set1S528 for Alteromonas macleodii MIT1002

Compare to:

Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 1

200 most important genes:

  gene name fitness t score description  
MIT1002_00160 -5.6 -8.9 Diaminopimelate decarboxylase compare
MIT1002_04092 -5.4 -6.5 putative type I restriction enzymeP M protein compare
MIT1002_02993 -5.3 -10.2 D-3-phosphoglycerate dehydrogenase compare
MIT1002_03979 -4.8 -1.9 Pullulanase secretion protein PulG compare
MIT1002_03977 -4.8 -3.3 Type II traffic warden ATPase compare
MIT1002_00115 -4.7 -2.2 Iron(III)-binding periplasmic protein compare
MIT1002_03805 -4.6 -2.6 hypothetical protein compare
MIT1002_03982 -4.6 -2.7 PilD-dependent protein PddD compare
MIT1002_01218 -4.5 -1.0 hypothetical protein compare
MIT1002_03981 -4.4 -2.0 Putative general secretion pathway protein I compare
MIT1002_03978 -4.4 -5.2 General secretion pathway protein F compare
MIT1002_01129 -4.3 -3.3 Carbon storage regulator compare
MIT1002_02035 -4.2 -2.2 Dihydroorotate dehydrogenase (quinone) compare
MIT1002_03976 -4.2 -7.4 Pullulanase secretion envelope PulD compare
MIT1002_01345 -4.1 -2.6 tRNA-Ser compare
MIT1002_04093 -4.0 -1.3 Type I restriction modification DNA specificity domain protein compare
MIT1002_01168 -4.0 -2.1 Flp pilus assembly protein TadD, contains TPR repeats compare
MIT1002_03985 -4.0 -4.7 General secretion pathway protein M compare
MIT1002_01222 -3.8 -2.2 Glutamate--cysteine ligase compare
MIT1002_03690 -3.8 -9.3 DnaK suppressor protein compare
MIT1002_03984 -3.7 -2.6 General secretion pathway protein L compare
MIT1002_03983 -3.7 -3.5 Putative general secretion pathway protein K compare
MIT1002_04124 -3.5 -2.4 Glucose-inhibited division protein A compare
MIT1002_02760 -3.4 -4.1 ATP-dependent Clp protease proteolytic subunit precursor compare
MIT1002_00485 -3.3 -9.2 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
MIT1002_03062 -3.3 -5.0 Pyrroline-5-carboxylate reductase compare
MIT1002_00843 -3.2 -5.7 hypothetical protein compare
MIT1002_01435 -3.2 -2.3 Ribosomal large subunit pseudouridine synthase B compare
MIT1002_03085 -3.1 -6.7 Homoserine kinase compare
MIT1002_00670 -3.1 -2.0 Outer membrane protein TolC precursor compare
MIT1002_03084 -3.1 -8.9 Threonine synthase compare
MIT1002_01163 -3.1 -2.8 hypothetical protein compare
MIT1002_00116 -3.1 -2.3 Spermidine/putrescine transport system permease protein PotB compare
MIT1002_04045 -2.9 -9.0 Ketol-acid reductoisomerase compare
MIT1002_03980 -2.9 -3.6 General secretion pathway protein H compare
MIT1002_02632 -2.9 -9.0 ATP phosphoribosyltransferase compare
MIT1002_00235 -2.9 -2.6 Glycogen synthase compare
MIT1002_02708 -2.9 -7.9 Phosphoserine phosphatase compare
MIT1002_01263 -2.8 -5.7 7-cyano-7-deazaguanine synthase compare
MIT1002_02633 -2.8 -9.4 Histidinol dehydrogenase compare
MIT1002_01638 -2.8 -4.1 Integration host factor subunit alpha compare
MIT1002_00423 -2.8 -5.5 Aspartate carbamoyltransferase catalytic chain compare
MIT1002_00117 -2.8 -2.2 Maltose/maltodextrin import ATP-binding protein MalK compare
MIT1002_03086 -2.7 -11.6 Aspartokinase I/homoserine dehydrogenase I compare
MIT1002_00377 -2.7 -9.4 Branched-chain-amino-acid aminotransferase 2 compare
MIT1002_00467 -2.6 -12.5 Argininosuccinate lyase compare
MIT1002_00454 -2.6 -4.8 Penicillin-binding protein 1A compare
MIT1002_01430 -2.6 -6.2 Anthranilate synthase component 1 compare
MIT1002_01266 -2.6 -9.6 Asparagine synthetase B [glutamine-hydrolyzing] compare
MIT1002_00521 -2.5 -3.8 N5-carboxyaminoimidazole ribonucleotide mutase compare
MIT1002_00076 -2.5 -2.5 transcriptional regulator, y4mF family compare
MIT1002_00815 -2.5 -3.5 Cytochrome b/c1 compare
MIT1002_03140 -2.5 -8.9 Glutamate synthase [NADPH] small chain compare
MIT1002_02638 -2.5 -6.9 Imidazole glycerol phosphate synthase subunit HisF compare
MIT1002_00469 -2.5 -8.6 Ornithine carbamoyltransferase compare
MIT1002_00946 -2.4 -8.5 3-isopropylmalate dehydratase small subunit 1 compare
MIT1002_03488 -2.4 -3.4 Na(+)-translocating NADH-quinone reductase subunit A compare
MIT1002_00471 -2.4 -13.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
MIT1002_03139 -2.4 -14.9 Glutamate synthase [NADPH] large chain precursor compare
MIT1002_02266 -2.4 -8.1 Methionine gamma-lyase compare
MIT1002_00948 -2.3 -10.8 3-isopropylmalate dehydrogenase compare
MIT1002_00988 -2.3 -7.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
MIT1002_02184 -2.3 -1.6 Orotidine 5'-phosphate decarboxylase compare
MIT1002_02129 -2.3 -6.3 hypothetical protein compare
MIT1002_00503 -2.3 -10.6 Acetolactate synthase isozyme 3 large subunit compare
MIT1002_02831 -2.3 -11.6 Isocitrate lyase compare
MIT1002_01035 -2.3 -5.0 anti-sigma28 factor FlgM compare
MIT1002_02406 -2.2 -2.8 6-phosphogluconolactonase compare
MIT1002_01428 -2.2 -4.8 Anthranilate synthase component II compare
MIT1002_00468 -2.2 -8.1 Argininosuccinate synthase compare
MIT1002_01264 -2.2 -5.5 7-carboxy-7-deazaguanine synthase compare
MIT1002_02639 -2.2 -6.2 Phosphoribosyl-ATP pyrophosphatase compare
MIT1002_02634 -2.2 -9.1 Histidinol-phosphate aminotransferase compare
MIT1002_02394 -2.2 -7.7 Glyceraldehyde-3-phosphate dehydrogenase compare
MIT1002_01429 -2.2 -5.5 Anthranilate synthase component II compare
MIT1002_04041 -2.2 -11.0 Dihydroxy-acid dehydratase compare
MIT1002_00949 -2.2 -12.7 2-isopropylmalate synthase compare
MIT1002_00947 -2.1 -10.5 3-isopropylmalate dehydratase large subunit compare
MIT1002_00470 -2.1 -8.4 Acetylglutamate kinase compare
MIT1002_02573 -2.1 -5.6 hypothetical protein compare
MIT1002_00522 -2.1 -6.8 N5-carboxyaminoimidazole ribonucleotide synthase compare
MIT1002_02133 -2.1 -3.2 putative integral membrane protein linked to a cation pump compare
MIT1002_01427 -2.1 -2.4 Tryptophan biosynthesis protein TrpCF compare
MIT1002_01132 -2.1 -1.1 tRNA-Arg compare
MIT1002_02219 -2.1 -10.1 Phosphoribosylformylglycinamidine cyclo-ligase compare
MIT1002_03096 -2.1 -8.3 Isocitrate dehydrogenase kinase/phosphatase compare
MIT1002_03058 -2.1 -1.7 hypothetical protein compare
MIT1002_01544 -2.1 -7.8 D-alanyl-D-alanine carboxypeptidase compare
MIT1002_04036 -2.0 -3.5 LexA repressor compare
MIT1002_02577 -2.0 -3.6 poly(hydroxyalkanoate) granule-associated protein compare
MIT1002_03486 -2.0 -2.9 Na(+)-translocating NADH-quinone reductase subunit C compare
MIT1002_02636 -2.0 -7.3 Imidazole glycerol phosphate synthase subunit HisH compare
MIT1002_01457 -2.0 -1.6 Heat shock protein 70 compare
MIT1002_00073 -2.0 -2.3 Cytochrome c5 compare
MIT1002_02635 -2.0 -8.4 Histidine biosynthesis bifunctional protein HisB compare
MIT1002_01984 -2.0 -5.5 queuosine biosynthesis protein QueD compare
MIT1002_01885 -1.9 -7.4 Gamma-glutamyl phosphate reductase compare
MIT1002_00074 -1.9 -2.7 tRNA-Arg compare
MIT1002_00826 -1.9 -2.9 Ribosome hibernation promoting factor compare
MIT1002_01112 -1.9 -6.2 Homoserine O-succinyltransferase compare
MIT1002_00233 -1.9 -2.6 Dye resistance protein compare
MIT1002_03513 -1.9 -5.6 hypothetical protein compare
MIT1002_00094 -1.9 -1.0 sulfur carrier protein ThiS compare
MIT1002_00437 -1.9 -7.3 Succinylornithine transaminase/acetylornithine aminotransferase compare
MIT1002_01467 -1.9 -9.9 Carbamoyl-phosphate synthase large chain compare
MIT1002_00466 -1.8 -8.3 Amino-acid acetyltransferase compare
MIT1002_02637 -1.8 -4.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MIT1002_01027 -1.8 -13.3 Phosphoribosylformylglycinamidine synthase compare
MIT1002_02833 -1.8 -11.0 Malate synthase G compare
MIT1002_03179 -1.8 -7.9 Cystathionine beta-lyase PatB compare
MIT1002_03869 -1.8 -1.1 CsbD-like protein compare
MIT1002_02538 -1.7 -1.7 3-oxoacyl-[acyl-carrier-protein] synthase 1 compare
MIT1002_00827 -1.7 -2.5 RNA polymerase sigma-54 factor 2 compare
MIT1002_02220 -1.7 -6.3 Phosphoribosylglycinamide formyltransferase compare
MIT1002_02218 -1.7 -3.2 hypothetical protein compare
MIT1002_04040 -1.7 -10.4 L-threonine dehydratase biosynthetic IlvA compare
MIT1002_03778 -1.7 -1.4 hypothetical protein compare
MIT1002_00504 -1.7 -5.5 Acetolactate synthase isozyme 3 small subunit compare
MIT1002_02759 -1.6 -2.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MIT1002_03481 -1.6 -1.8 hypothetical protein compare
MIT1002_02524 -1.6 -9.5 Amidophosphoribosyltransferase compare
MIT1002_03483 -1.6 -1.5 Na(+)-translocating NADH-quinone reductase subunit F compare
MIT1002_03961 -1.6 -8.8 Phosphoribosylamine--glycine ligase compare
MIT1002_03516 -1.6 -8.7 Acetyl-coenzyme A synthetase compare
MIT1002_02653 -1.6 -1.4 Nucleoid-associated protein YbaB compare
MIT1002_01979 -1.5 -5.4 Carnitinyl-CoA dehydratase compare
MIT1002_03374 -1.5 -3.1 hypothetical protein compare
MIT1002_03130 -1.5 -4.9 2-methylcitrate synthase compare
MIT1002_01295 -1.5 -4.1 Inner membrane protein YpjD compare
MIT1002_02041 -1.4 -1.9 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase compare
MIT1002_02832 -1.4 -4.8 Nodulation protein D 2 compare
MIT1002_04212 -1.4 -1.9 hypothetical protein compare
MIT1002_00955 -1.4 -2.2 Recombinase A compare
MIT1002_01316 -1.4 -5.7 P-protein compare
MIT1002_00350 -1.4 -2.2 hypothetical protein compare
MIT1002_02405 -1.4 -3.4 Phosphogluconate dehydratase compare
MIT1002_02404 -1.4 -4.1 Glucokinase compare
MIT1002_02188 -1.4 -2.0 Integration host factor subunit beta compare
MIT1002_01466 -1.3 -4.4 Carbamoyl-phosphate synthase small chain compare
MIT1002_04223 -1.3 -2.6 Transcriptional regulatory protein YycF compare
MIT1002_00114 -1.3 -1.2 hypothetical protein compare
MIT1002_03581 -1.3 -4.9 Mannose-1-phosphate guanylyltransferase 1 compare
MIT1002_00107 -1.3 -2.1 DNA-directed RNA polymerase subunit omega compare
MIT1002_01418 -1.3 -2.0 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
MIT1002_03055 -1.3 -3.8 Glutathione synthetase compare
MIT1002_03110 -1.3 -3.5 Carboxynorspermidine/carboxyspermidine decarboxylase compare
MIT1002_02136 -1.2 -2.8 hypothetical protein compare
MIT1002_02154 -1.2 -2.2 Response regulator UvrY compare
MIT1002_03786 -1.2 -6.6 Modulator of FtsH protease HflK compare
MIT1002_02433 -1.2 -1.3 2-dehydro-3-deoxy-phosphogluconate aldolase compare
MIT1002_02929 -1.2 -0.9 Lactoylglutathione lyase compare
MIT1002_04233 -1.2 -1.8 hypothetical protein compare
MIT1002_03372 -1.2 -5.4 Fatty acid desaturase compare
MIT1002_00814 -1.2 -2.8 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
MIT1002_02785 -1.2 -3.5 Outer membrane protein assembly factor BamB precursor compare
MIT1002_02718 -1.2 -1.9 Sigma-E factor negative regulatory protein compare
MIT1002_00111 -1.2 -3.4 ATP-dependent DNA helicase RecG compare
MIT1002_04135 -1.2 -5.9 ParB/RepB/Spo0J family partition protein compare
MIT1002_00161 -1.1 -2.3 putative small periplasmic lipoprotein compare
MIT1002_02429 -1.1 -5.7 Glucose-resistance amylase regulator compare
MIT1002_02128 -1.1 -2.2 hypothetical protein compare
MIT1002_00683 -1.1 -2.9 Elongation factor P--(R)-beta-lysine ligase compare
MIT1002_03003 -1.1 -3.0 Pyruvate dehydrogenase E1 component compare
MIT1002_02655 -1.1 -2.0 Adenine phosphoribosyltransferase compare
MIT1002_03484 -1.1 -1.3 Na(+)-translocating NADH-quinone reductase subunit E compare
MIT1002_02134 -1.1 -3.2 putative copper-importing P-type ATPase A compare
MIT1002_00560 -1.1 -1.9 DNA-binding transcriptional activator PspC compare
MIT1002_03802 -1.1 -2.0 Outer membrane porin F precursor compare
MIT1002_04050 -1.1 -1.0 hypothetical protein compare
MIT1002_02702 -1.1 -4.8 Serine hydroxymethyltransferase compare
MIT1002_03321 -1.1 -6.1 Aldehyde dehydrogenase B compare
MIT1002_03109 -1.0 -1.9 Saccharopine dehydrogenase compare
MIT1002_00752 -1.0 -1.3 Phosphate regulon sensor protein PhoR compare
MIT1002_02211 -1.0 -6.1 TPR repeat-containing protein YfgC precursor compare
MIT1002_03128 -1.0 -5.7 Carbon starvation induced regulator compare
MIT1002_00189 -1.0 -5.5 Galactokinase compare
MIT1002_03771 -1.0 -3.3 N-acetylglucosamine repressor compare
MIT1002_02441 -1.0 -3.1 Helix-turn-helix domain protein compare
MIT1002_01143 -1.0 -1.9 Phage shock protein A compare
MIT1002_03317 -1.0 -2.2 Transcriptional regulatory protein DevR (DosR) compare
MIT1002_02525 -1.0 -2.6 Pur regulon 18 kDa protein compare
MIT1002_04044 -1.0 -6.0 HTH-type transcriptional regulator GltC compare
MIT1002_03623 -1.0 -5.8 hypothetical protein compare
MIT1002_03567 -1.0 -3.0 mycofactocin system glycosyltransferase compare
MIT1002_02494 -1.0 -3.7 Hydroxyacylglutathione hydrolase compare
MIT1002_03785 -1.0 -5.1 Modulator of FtsH protease HflC compare
MIT1002_01504 -1.0 -2.4 Ribosome-binding ATPase YchF compare
MIT1002_02568 -1.0 -2.2 Tetracycline repressor protein class A from transposon 1721 compare
MIT1002_00108 -1.0 -3.8 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MIT1002_02583 -1.0 -2.2 hypothetical protein compare
MIT1002_03487 -1.0 -1.4 Na(+)-translocating NADH-quinone reductase subunit B compare
MIT1002_03184 -1.0 -3.7 hypothetical protein compare
MIT1002_01011 -1.0 -2.2 Regulator of sigma E protease compare
MIT1002_01815 -0.9 -3.4 Phosphoenolpyruvate synthase regulatory protein compare
MIT1002_03015 -0.9 -2.7 aspartoacylase compare
MIT1002_00844 -0.9 -3.1 AFG1-like ATPase compare
MIT1002_00055 -0.9 -1.1 50S ribosomal protein L33 compare
MIT1002_03026 -0.9 -0.9 Cell division protein FtsW compare
MIT1002_00884 -0.9 -1.2 hypothetical protein compare
MIT1002_03091 -0.9 -2.9 HTH-type transcriptional repressor AseR compare


Specific Phenotypes

None in this experiment

For Alteromonas macleodii MIT1002 in mixed community experiments

For mixed community Mixed culture; Prochlorococcus marinus str. MIT9313 10:1 starting OD to HP15 across organisms