Experiment set1S527 for Rhodanobacter sp000427505 FW510-R12

Compare to:

biofilm; Day4; SGW; Aluminum chloride hydrate 1mM

200 most important genes:

  gene name fitness t score description  
LRK53_RS09435 -3.1 -2.2 malate dehydrogenase compare
LRK53_RS03185 -3.1 -3.7 S-ribosylhomocysteine lyase compare
LRK53_RS05905 -3.1 -2.1 thymidylate synthase compare
LRK53_RS04445 -2.9 -2.0 glycoside hydrolase family 99-like domain-containing protein compare
LRK53_RS00525 -2.7 -2.3 glycosyltransferase family 4 protein compare
LRK53_RS14840 -2.7 -1.9 trypsin-like peptidase domain-containing protein compare
LRK53_RS04390 -2.6 -3.1 glycosyltransferase family 2 protein compare
LRK53_RS18860 -2.6 -2.2 hypothetical protein compare
LRK53_RS17865 -2.5 -2.5 anhydro-N-acetylmuramic acid kinase compare
LRK53_RS18770 -2.5 -2.2 hypothetical protein compare
LRK53_RS11805 -2.4 -2.3 heavy metal translocating P-type ATPase compare
LRK53_RS16290 -2.1 -3.7 division/cell wall cluster transcriptional repressor MraZ compare
LRK53_RS01585 -2.1 -3.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK53_RS03065 -2.1 -1.1 4-hydroxybenzoate octaprenyltransferase compare
LRK53_RS11300 -1.9 -4.4 polysaccharide biosynthesis protein compare
LRK53_RS11025 -1.9 -3.0 hypothetical protein compare
LRK53_RS09170 -1.8 -3.3 cupin domain-containing protein compare
LRK53_RS02990 -1.8 -1.4 pyridoxal-phosphate dependent enzyme compare
LRK53_RS03010 -1.8 -1.3 hypothetical protein compare
LRK53_RS12370 -1.8 -2.0 VOC family protein compare
LRK53_RS06670 -1.7 -2.4 RIP metalloprotease RseP compare
LRK53_RS14910 -1.7 -3.2 chemoreceptor glutamine deamidase CheD compare
LRK53_RS00565 -1.7 -2.7 ATP-binding protein compare
LRK53_RS00945 -1.7 -2.2 helix-turn-helix domain-containing protein compare
LRK53_RS12880 -1.6 -2.0 hypothetical protein compare
LRK53_RS11825 -1.6 -2.9 exodeoxyribonuclease VII large subunit compare
LRK53_RS11185 -1.6 -0.8 DUF4115 domain-containing protein compare
LRK53_RS06715 -1.6 -1.5 [protein-PII] uridylyltransferase compare
LRK53_RS11795 -1.6 -2.1 cytochrome-c oxidase, cbb3-type subunit III compare
LRK53_RS14800 -1.5 -6.9 DUF1631 domain-containing protein compare
LRK53_RS16160 -1.5 -3.6 hypothetical protein compare
LRK53_RS07695 -1.5 -2.3 enoyl-CoA hydratase-related protein compare
LRK53_RS14100 -1.5 -3.2 response regulator transcription factor compare
LRK53_RS18830 -1.4 -1.7 TraV family lipoprotein compare
LRK53_RS10200 -1.4 -2.0 TraR/DksA C4-type zinc finger protein compare
LRK53_RS15175 -1.4 -3.2 flagellar basal body rod protein FlgB compare
LRK53_RS04795 -1.4 -3.0 IS5 family transposase compare
LRK53_RS07980 -1.4 -1.3 GNAT family N-acetyltransferase compare
LRK53_RS15625 -1.4 -6.5 hemolysin family protein compare
LRK53_RS11050 -1.4 -1.9 hypothetical protein compare
LRK53_RS01745 -1.4 -6.7 TetR/AcrR family transcriptional regulator compare
LRK53_RS13415 -1.3 -1.4 DUF2059 domain-containing protein compare
LRK53_RS16995 -1.3 -1.3 aminodeoxychorismate/anthranilate synthase component II compare
LRK53_RS06860 -1.3 -2.0 nucleotidyltransferase family protein compare
LRK53_RS09460 -1.3 -3.2 methylisocitrate lyase compare
LRK53_RS01440 -1.3 -3.7 ATP-binding cassette domain-containing protein compare
LRK53_RS15755 -1.3 -2.0 SDR family oxidoreductase compare
LRK53_RS09100 -1.3 -2.9 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
LRK53_RS00570 -1.3 -4.6 nitrogen regulation protein NR(I) compare
LRK53_RS18155 -1.3 -1.4 hypothetical protein compare
LRK53_RS11565 -1.3 -2.2 nucleoside diphosphate kinase regulator compare
LRK53_RS09730 -1.2 -4.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK53_RS03715 -1.2 -0.9 cell division ATP-binding protein FtsE compare
LRK53_RS05175 -1.2 -1.8 7-cyano-7-deazaguanine synthase QueC compare
LRK53_RS19135 -1.2 -1.4 hypothetical protein compare
LRK53_RS11155 -1.2 -5.8 glutamine-hydrolyzing GMP synthase compare
LRK53_RS14865 -1.2 -2.2 CBS domain-containing protein compare
LRK53_RS14435 -1.2 -1.8 hypothetical protein compare
LRK53_RS15705 -1.2 -5.9 RNA polymerase factor sigma-54 compare
LRK53_RS17540 -1.2 -1.1 YbaN family protein compare
LRK53_RS02380 -1.2 -1.9 hypothetical protein compare
LRK53_RS03415 -1.2 -2.5 tRNA (cytidine(34)-2'-O)-methyltransferase compare
LRK53_RS16495 -1.2 -3.2 adenosylhomocysteinase compare
LRK53_RS19070 -1.2 -3.2 hypothetical protein compare
LRK53_RS07045 -1.2 -1.7 response regulator compare
LRK53_RS03330 -1.1 -1.2 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK53_RS00695 -1.1 -6.7 TonB-dependent vitamin B12 receptor compare
LRK53_RS07020 -1.1 -1.2 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK53_RS11330 -1.1 -1.9 (d)CMP kinase compare
LRK53_RS05045 -1.1 -0.7 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
LRK53_RS03690 -1.1 -2.3 dihydroorotase compare
LRK53_RS15820 -1.1 -0.7 metal/formaldehyde-sensitive transcriptional repressor compare
LRK53_RS05760 -1.1 -0.7 chemotaxis protein CheW compare
LRK53_RS07035 -1.1 -2.6 TolC family protein compare
LRK53_RS12980 -1.1 -0.8 hypothetical protein compare
LRK53_RS01325 -1.0 -3.3 magnesium-translocating P-type ATPase compare
LRK53_RS18670 -1.0 -2.5 translesion DNA synthesis-associated protein ImuA compare
LRK53_RS01185 -1.0 -2.5 GAF domain-containing protein compare
LRK53_RS02815 -1.0 -1.8 DmsE family decaheme c-type cytochrome compare
LRK53_RS01520 -1.0 -2.5 rhodanese-like domain-containing protein compare
LRK53_RS19105 -1.0 -3.0 hypothetical protein compare
LRK53_RS12485 -1.0 -1.2 hypothetical protein compare
LRK53_RS10470 -1.0 -1.2 MarR family winged helix-turn-helix transcriptional regulator compare
LRK53_RS00755 -1.0 -3.4 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS02535 -1.0 -4.8 DUF481 domain-containing protein compare
LRK53_RS14520 -1.0 -1.0 GNAT family N-acetyltransferase compare
LRK53_RS13770 -1.0 -2.1 protease HtpX compare
LRK53_RS19155 -1.0 -1.2 hypothetical protein compare
LRK53_RS12025 -1.0 -1.7 DUF2058 family protein compare
LRK53_RS18390 -1.0 -0.8 hypothetical protein compare
LRK53_RS11140 -1.0 -1.4 hypothetical protein compare
LRK53_RS16635 -1.0 -1.5 efflux RND transporter periplasmic adaptor subunit compare
LRK53_RS13565 -0.9 -0.9 isocitrate dehydrogenase compare
LRK53_RS12655 -0.9 -2.6 TatD family hydrolase compare
LRK53_RS02405 -0.9 -1.7 YecA family protein compare
LRK53_RS14190 -0.9 -1.0 MAPEG family protein compare
LRK53_RS06000 -0.9 -4.6 hypothetical protein compare
LRK53_RS13060 -0.9 -1.0 DksA/TraR family C4-type zinc finger protein compare
LRK53_RS18130 -0.9 -1.8 lytic transglycosylase domain-containing protein compare
LRK53_RS05015 -0.9 -2.4 LacI family DNA-binding transcriptional regulator compare
LRK53_RS00370 -0.9 -2.7 DNA starvation/stationary phase protection protein compare
LRK53_RS15650 -0.9 -3.8 DUF2066 domain-containing protein compare
LRK53_RS17565 -0.9 -2.6 DUF2127 domain-containing protein compare
LRK53_RS13595 -0.9 -3.7 polyphosphate kinase 1 compare
LRK53_RS02300 -0.9 -2.3 hypothetical protein compare
LRK53_RS16305 -0.9 -5.2 penicillin-binding protein activator compare
LRK53_RS05995 -0.9 -4.9 oligosaccharide flippase family protein compare
LRK53_RS18460 -0.9 -1.2 hypothetical protein compare
LRK53_RS02095 -0.9 -1.7 helix-turn-helix domain-containing protein compare
LRK53_RS15105 -0.9 -1.9 flagellar export chaperone FliS compare
LRK53_RS16005 -0.9 -3.1 DUF4350 domain-containing protein compare
LRK53_RS04100 -0.9 -1.3 DUF3247 family protein compare
LRK53_RS15315 -0.8 -1.9 hypothetical protein compare
LRK53_RS17980 -0.8 -3.8 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein compare
LRK53_RS09905 -0.8 -0.8 translesion DNA synthesis-associated protein ImuA compare
LRK53_RS08430 -0.8 -1.0 30S ribosomal protein THX compare
LRK53_RS04200 -0.8 -0.9 hypothetical protein compare
LRK53_RS06930 -0.8 -1.2 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK53_RS17325 -0.8 -3.0 hypothetical protein compare
LRK53_RS07500 -0.8 -1.0 membrane protein insertion efficiency factor YidD compare
LRK53_RS14990 -0.8 -2.1 chemotaxis response regulator CheY compare
LRK53_RS14260 -0.8 -2.1 carboxymuconolactone decarboxylase family protein compare
LRK53_RS11095 -0.8 -1.8 hypothetical protein compare
LRK53_RS11925 -0.8 -1.5 hypoxanthine-guanine phosphoribosyltransferase compare
LRK53_RS17570 -0.8 -0.9 alpha/beta hydrolase compare
LRK53_RS19090 -0.8 -3.5 hypothetical protein compare
LRK53_RS17205 -0.8 -2.6 fumarylacetoacetate hydrolase family protein compare
LRK53_RS15170 -0.8 -2.1 flagellar basal body rod protein FlgC compare
LRK53_RS14455 -0.8 -1.3 ATP-binding protein compare
LRK53_RS11790 -0.8 -1.9 cbb3-type cytochrome c oxidase subunit 3 compare
LRK53_RS02515 -0.8 -2.1 DUF488 family protein compare
LRK53_RS14960 -0.8 -0.7 DUF2802 domain-containing protein compare
LRK53_RS09865 -0.8 -2.0 thioesterase compare
LRK53_RS13070 -0.8 -1.2 OsmC family protein compare
LRK53_RS14215 -0.8 -1.6 hypothetical protein compare
LRK53_RS12700 -0.8 -1.5 DUF3293 domain-containing protein compare
LRK53_RS05200 -0.8 -1.4 type IV pilus modification protein PilV compare
LRK53_RS17785 -0.8 -1.9 septal ring lytic transglycosylase RlpA family protein compare
LRK53_RS00690 -0.8 -1.0 N-acetylglucosamine-6-phosphate deacetylase compare
LRK53_RS11965 -0.8 -2.0 DNA repair protein RecO compare
LRK53_RS04310 -0.8 -1.3 YdcH family protein compare
LRK53_RS01025 -0.8 -2.1 hypothetical protein compare
LRK53_RS02890 -0.8 -3.3 glycosyltransferase compare
LRK53_RS16505 -0.8 -2.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
LRK53_RS11180 -0.8 -2.9 tetratricopeptide repeat protein compare
LRK53_RS06870 -0.8 -0.7 SUF system Fe-S cluster assembly regulator compare
LRK53_RS18435 -0.7 -2.1 replicative DNA helicase compare
LRK53_RS10295 -0.7 -2.7 YCF48-related protein compare
LRK53_RS18650 -0.7 -1.0 transposase compare
LRK53_RS04180 -0.7 -1.9 ABC transporter ATP-binding protein compare
LRK53_RS03200 -0.7 -2.1 UbiA family prenyltransferase compare
LRK53_RS15805 -0.7 -1.5 NAD(P)-binding domain-containing protein compare
LRK53_RS13635 -0.7 -1.2 recombination regulator RecX compare
LRK53_RS02885 -0.7 -1.9 glycosyltransferase family 2 protein compare
LRK53_RS16300 -0.7 -1.3 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK53_RS02285 -0.7 -1.5 oxygen-dependent coproporphyrinogen oxidase compare
LRK53_RS16675 -0.7 -1.4 DUF58 domain-containing protein compare
LRK53_RS12400 -0.7 -3.3 GNAT family N-acetyltransferase compare
LRK53_RS18825 -0.7 -1.8 hypothetical protein compare
LRK53_RS17765 -0.7 -1.9 lipoyl synthase compare
LRK53_RS08095 -0.7 -1.4 copper-binding protein compare
LRK53_RS05070 -0.7 -1.3 helix-turn-helix transcriptional regulator compare
LRK53_RS01660 -0.7 -1.2 hypothetical protein compare
LRK53_RS05685 -0.7 -5.3 type IV pilus twitching motility protein PilT compare
LRK53_RS16030 -0.7 -2.9 SET domain-containing protein-lysine N-methyltransferase compare
LRK53_RS01545 -0.7 -3.2 tetratricopeptide repeat protein compare
LRK53_RS14665 -0.7 -2.1 molybdopterin-synthase adenylyltransferase MoeB compare
LRK53_RS04975 -0.7 -2.8 response regulator compare
LRK53_RS14465 -0.7 -2.3 cytochrome b/b6 domain-containing protein compare
LRK53_RS15460 -0.7 -2.2 FHA domain-containing protein compare
LRK53_RS17100 -0.7 -1.7 proteobacterial dedicated sortase system response regulator compare
LRK53_RS04750 -0.7 -1.9 L-serine ammonia-lyase compare
LRK53_RS06865 -0.7 -3.2 phosphotransferase compare
LRK53_RS16170 -0.7 -2.9 histone deacetylase family protein compare
LRK53_RS07915 -0.7 -2.8 methionine synthase compare
LRK53_RS08620 -0.7 -1.5 VOC family protein compare
LRK53_RS09475 -0.7 -4.0 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK53_RS18980 -0.7 -1.2 hypothetical protein compare
LRK53_RS03095 -0.7 -0.9 dihydroxy-acid dehydratase compare
LRK53_RS17580 -0.7 -2.4 GNAT family N-acetyltransferase compare
LRK53_RS05560 -0.7 -1.8 threonine/serine exporter family protein compare
LRK53_RS10985 -0.7 -1.3 phosphatase PAP2 family protein compare
LRK53_RS18160 -0.7 -1.6 thermonuclease family protein compare
LRK53_RS18030 -0.7 -2.6 hypothetical protein compare
LRK53_RS01170 -0.7 -4.4 thiol:disulfide interchange protein DsbA/DsbL compare
LRK53_RS00760 -0.7 -0.7 DUF302 domain-containing protein compare
LRK53_RS03460 -0.7 -2.1 GNAT family N-acetyltransferase compare
LRK53_RS15140 -0.7 -2.1 flagellar basal body P-ring protein FlgI compare
LRK53_RS12275 -0.7 -1.6 Smr/MutS family protein compare
LRK53_RS12580 -0.7 -1.1 biopolymer transporter ExbD compare
LRK53_RS01460 -0.7 -2.7 DNA recombination protein RmuC compare
LRK53_RS01320 -0.7 -1.5 hypothetical protein compare
LRK53_RS18060 -0.6 -1.7 GNAT family N-acetyltransferase compare
LRK53_RS07385 -0.6 -3.1 MalM family protein compare
LRK53_RS00405 -0.6 -0.7 trimeric intracellular cation channel family protein compare
LRK53_RS11125 -0.6 -2.3 FAD-dependent oxidoreductase compare
LRK53_RS13420 -0.6 -3.9 excinuclease ABC subunit UvrA compare
LRK53_RS03865 -0.6 -1.9 DsbA family oxidoreductase compare
LRK53_RS01145 -0.6 -3.6 transglycosylase SLT domain-containing protein compare
LRK53_RS16000 -0.6 -2.3 MoxR family ATPase compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp000427505 FW510-R12 in biofilm assay; biofilm sample experiments

For biofilm assay; biofilm sample Aluminum chloride hydrate across organisms