Experiment set1S527 for Paraburkholderia sabiae LMG 24235

Compare to:

Motility_outer_sample_with_outgrowth

200 most important genes:

  gene name fitness t score description  
QEN71_RS20125 -9.5 -6.6 flagellar transcriptional regulator FlhD compare
QEN71_RS20120 -8.0 -5.5 flagellar transcriptional regulator FlhC compare
QEN71_RS29035 -7.5 -12.5 flagellar transcriptional regulator FlhD compare
QEN71_RS28795 -7.4 -7.3 flagellar basal-body MS-ring/collar protein FliF compare
QEN71_RS00505 -7.4 -8.8 response regulator transcription factor RqpR compare
QEN71_RS28830 -7.3 -7.1 flagellar motor switch protein FliM compare
QEN71_RS28845 -7.2 -4.9 flagellar type III secretion system pore protein FliP compare
QEN71_RS29025 -7.1 -4.9 flagellar motor stator protein MotA compare
QEN71_RS28980 -7.1 -4.9 chemotaxis response regulator CheY compare
QEN71_RS28850 -7.0 -4.9 flagellar biosynthesis protein FliQ compare
QEN71_RS28800 -7.0 -4.8 flagellar motor switch protein FliG compare
QEN71_RS29005 -6.9 -4.8 chemotaxis protein CheW compare
QEN71_RS28950 -6.8 -4.7 flagellar biosynthesis protein FlhF compare
QEN71_RS15185 -6.8 -4.7 RNA polymerase sigma factor RpoD compare
QEN71_RS28825 -6.7 -4.6 flagellar basal body-associated protein FliL compare
QEN71_RS28785 -6.6 -4.6 flagellar export chaperone FliS compare
QEN71_RS28095 -6.6 -4.6 c-type cytochrome biogenesis protein CcsB compare
QEN71_RS28840 -6.6 -4.5 flagellar biosynthetic protein FliO compare
QEN71_RS16430 -6.4 -11.6 squalene--hopene cyclase compare
QEN71_RS27005 -6.4 -4.4 type I glyceraldehyde-3-phosphate dehydrogenase compare
QEN71_RS28820 -6.3 -4.4 flagellar hook-length control protein FliK compare
QEN71_RS04725 -6.3 -19.9 glycosyltransferase family 4 protein compare
QEN71_RS28985 -6.2 -7.4 chemotaxis response regulator protein-glutamate methylesterase compare
QEN71_RS28815 -6.2 -4.3 flagellar export protein FliJ compare
QEN71_RS29135 -6.1 -4.2 glycosyltransferase compare
QEN71_RS28855 -6.1 -4.2 flagellar biosynthetic protein FliR compare
QEN71_RS32200 -6.1 -10.1 MarR family transcriptional regulator compare
QEN71_RS29010 -6.0 -4.2 chemotaxis protein CheA compare
QEN71_RS28860 -6.0 -4.2 flagellar hook-associated protein FlgL compare
QEN71_RS29090 -5.9 -4.1 flagellin domain-containing protein compare
QEN71_RS29495 -5.9 -4.1 HU family DNA-binding protein compare
QEN71_RS28975 -5.9 -5.8 protein phosphatase CheZ compare
QEN71_RS28865 -5.9 -4.1 flagellar hook-associated protein FlgK compare
QEN71_RS28805 -5.8 -4.0 flagellar assembly protein FliH compare
QEN71_RS28810 -5.8 -4.0 flagellar protein export ATPase FliI compare
QEN71_RS22425 -5.8 -8.8 SMR family transporter compare
QEN71_RS37145 -5.7 -3.1 TetR family transcriptional regulator compare
QEN71_RS00360 -5.7 -4.0 DUF484 family protein compare
QEN71_RS28955 -5.7 -4.0 flagellar biosynthesis protein FlhA compare
QEN71_RS22025 -5.7 -6.7 hypothetical protein compare
QEN71_RS02265 -5.7 -3.9 DEAD/DEAH box helicase compare
QEN71_RS28960 -5.7 -3.9 flagellar biosynthesis protein FlhB compare
QEN71_RS28995 -5.6 -8.6 CheR family methyltransferase compare
QEN71_RS01445 -5.6 -6.7 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
QEN71_RS28990 -5.6 -3.8 chemoreceptor glutamine deamidase CheD compare
QEN71_RS17600 -5.4 -20.1 citrate synthase compare
QEN71_RS28910 -5.2 -3.6 flagellar hook assembly protein FlgD compare
QEN71_RS21425 -5.1 -7.8 HAMP domain-containing sensor histidine kinase compare
QEN71_RS28890 -5.1 -3.5 flagellar basal body L-ring protein FlgH compare
QEN71_RS17630 -5.1 -4.9 FimV/HubP family polar landmark protein compare
QEN71_RS04720 -5.0 -12.2 ABC transporter ATP-binding protein compare
QEN71_RS28935 -4.9 -4.8 flagellar protein FlgN compare
QEN71_RS03520 -4.9 -3.4 septum site-determining protein MinD compare
QEN71_RS29155 -4.9 -11.8 WbqC family protein compare
QEN71_RS16425 -4.9 -3.4 phosphorylase compare
QEN71_RS29165 -4.8 -15.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
QEN71_RS28930 -4.8 -7.3 flagellar biosynthesis anti-sigma factor FlgM compare
QEN71_RS29020 -4.7 -9.1 flagellar motor protein MotB compare
QEN71_RS02425 -4.7 -3.2 phosphoglycerate kinase compare
QEN71_RS28880 -4.7 -3.2 flagellar assembly peptidoglycan hydrolase FlgJ compare
QEN71_RS00180 -4.6 -3.2 DUF4390 domain-containing protein compare
QEN71_RS29160 -4.6 -12.6 DegT/DnrJ/EryC1/StrS family aminotransferase compare
QEN71_RS22250 -4.6 -7.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
QEN71_RS26895 -4.5 -4.4 LysR substrate-binding domain-containing protein compare
QEN71_RS21975 -4.5 -3.1 endopeptidase La compare
QEN71_RS07825 -4.5 -17.3 cytochrome ubiquinol oxidase subunit I compare
QEN71_RS01745 -4.5 -3.1 PTS sugar transporter subunit IIA compare
QEN71_RS06505 -4.4 -3.1 phosphoenolpyruvate synthase compare
QEN71_RS04585 -4.4 -6.0 MucB/RseB C-terminal domain-containing protein compare
QEN71_RS28905 -4.4 -3.0 flagellar hook protein FlgE compare
QEN71_RS23330 -4.4 -21.2 sensor domain-containing phosphodiesterase compare
QEN71_RS42215 -4.4 -3.0 4Fe-4S dicluster domain-containing protein compare
QEN71_RS25070 -4.4 -3.0 aspartate 1-decarboxylase compare
QEN71_RS22490 -4.3 -3.0 50S ribosomal protein L9 compare
QEN71_RS28895 -4.3 -3.0 flagellar basal-body rod protein FlgG compare
QEN71_RS28885 -4.2 -2.9 flagellar basal body P-ring protein FlgI compare
QEN71_RS29145 -4.2 -17.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
QEN71_RS43315 -4.1 -6.9 helix-turn-helix transcriptional regulator compare
QEN71_RS03930 -4.1 -12.5 disulfide bond formation protein B compare
QEN71_RS29100 -4.1 -1.6 flagellar protein FliT compare
QEN71_RS15190 -4.1 -4.6 hypothetical protein compare
QEN71_RS25730 -4.1 -4.0 ABC transporter permease compare
QEN71_RS03515 -4.1 -2.8 septum site-determining protein MinC compare
QEN71_RS16400 -4.1 -4.0 adenosyl-hopene transferase HpnH compare
QEN71_RS04710 -4.0 -13.8 trehalose-phosphatase compare
QEN71_RS28925 -4.0 -2.8 flagellar basal body P-ring formation chaperone FlgA compare
QEN71_RS28915 -4.0 -2.8 flagellar basal body rod protein FlgC compare
QEN71_RS25420 -4.0 -3.9 oligosaccharide flippase family protein compare
QEN71_RS17085 -4.0 -15.8 PAS domain-containing methyl-accepting chemotaxis protein compare
QEN71_RS02345 -4.0 -5.4 DUF2889 domain-containing protein compare
QEN71_RS25725 -3.9 -4.7 ABC transporter ATP-binding protein compare
QEN71_RS29675 -3.9 -6.4 ribonuclease P protein component compare
QEN71_RS25715 -3.9 -2.7 acetyltransferase compare
QEN71_RS16375 -3.9 -15.5 NAD-dependent epimerase/dehydratase family protein compare
QEN71_RS27190 -3.9 -2.7 carbohydrate kinase family protein compare
QEN71_RS17545 -3.8 -3.7 hypothetical protein compare
QEN71_RS26775 -3.8 -2.6 Fis family transcriptional regulator compare
QEN71_RS24565 -3.8 -5.8 DUF1841 family protein compare
QEN71_RS01820 -3.8 -14.5 AI-2E family transporter compare
QEN71_RS00185 -3.8 -6.3 PAS domain-containing sensor histidine kinase compare
QEN71_RS01165 -3.8 -8.0 thiol:disulfide interchange protein DsbA/DsbL compare
QEN71_RS24220 -3.7 -5.1 acetolactate synthase small subunit compare
QEN71_RS02440 -3.7 -4.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
QEN71_RS28940 -3.7 -2.5 RNA polymerase sigma factor FliA compare
QEN71_RS16440 -3.7 -2.5 presqualene diphosphate synthase HpnD compare
QEN71_RS23945 -3.7 -3.0 5S ribosomal RNA compare
QEN71_RS29185 -3.7 -10.8 UvrD-helicase domain-containing protein compare
QEN71_RS04715 -3.7 -20.6 alpha,alpha-trehalose-phosphate synthase (UDP-forming) compare
QEN71_RS02355 -3.6 -22.4 succinate--CoA ligase subunit alpha compare
QEN71_RS26275 -3.6 -2.5 tol-pal system protein YbgF compare
QEN71_RS02570 -3.6 -10.2 ABC transporter ATP-binding protein compare
QEN71_RS22015 -3.6 -7.3 squalene/phytoene synthase family protein compare
QEN71_RS35025 -3.6 -13.7 efflux RND transporter permease subunit compare
QEN71_RS22255 -3.6 -12.3 5'/3'-nucleotidase SurE compare
QEN71_RS28370 -3.6 -3.5 23S ribosomal RNA compare
QEN71_RS28900 -3.6 -2.5 flagellar basal-body rod protein FlgF compare
QEN71_RS27685 -3.6 -2.4 UbiX family flavin prenyltransferase compare
QEN71_RS27675 -3.6 -2.5 peptide chain release factor N(5)-glutamine methyltransferase compare
QEN71_RS02350 -3.6 -21.0 ADP-forming succinate--CoA ligase subunit beta compare
QEN71_RS27915 -3.5 -2.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
QEN71_RS28920 -3.5 -1.9 flagellar basal body rod protein FlgB compare
QEN71_RS24430 -3.5 -2.4 ribonuclease G compare
QEN71_RS07090 -3.5 -6.3 ABC-F family ATPase compare
QEN71_RS27900 -3.5 -2.4 ABC transporter substrate-binding protein compare
QEN71_RS07305 -3.5 -10.7 saccharopine dehydrogenase NADP-binding domain-containing protein compare
QEN71_RS07820 -3.5 -6.7 cytochrome d ubiquinol oxidase subunit II compare
QEN71_RS26480 -3.5 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
QEN71_RS27600 -3.5 -4.1 redox-regulated ATPase YchF compare
QEN71_RS21935 -3.5 -2.4 glucose-6-phosphate isomerase compare
QEN71_RS25205 -3.5 -4.1 leucyl aminopeptidase compare
QEN71_RS03745 -3.5 -4.1 TlpA family protein disulfide reductase compare
QEN71_RS02565 -3.5 -4.1 metal ABC transporter permease compare
QEN71_RS25710 -3.4 -2.4 GNAT family N-acetyltransferase compare
QEN71_RS05615 -3.4 -2.4 oxidative damage protection protein compare
QEN71_RS06045 -3.4 -6.2 Tex family protein compare
QEN71_RS29110 -3.4 -17.0 tetratricopeptide repeat protein compare
QEN71_RS28070 -3.4 -6.9 iron donor protein CyaY compare
QEN71_RS25055 -3.4 -2.4 DUF3460 family protein compare
QEN71_RS05450 -3.4 -2.4 outer membrane protein assembly factor BamC compare
QEN71_RS24465 -3.4 -6.9 glycosyltransferase family 2 protein compare
QEN71_RS25425 -3.4 -4.0 glycosyltransferase compare
QEN71_RS22745 -3.4 -5.3 tRNA-Met compare
QEN71_RS06465 -3.4 -3.1 OmpH family outer membrane protein compare
QEN71_RS27365 -3.4 -3.0 peroxiredoxin compare
QEN71_RS25630 -3.4 -2.3 NAD-dependent epimerase/dehydratase family protein compare
QEN71_RS29450 -3.4 -2.3 SET domain-containing protein-lysine N-methyltransferase compare
QEN71_RS04785 -3.4 -6.8 transcription elongation factor GreA compare
QEN71_RS27260 -3.4 -18.8 RNA pyrophosphohydrolase compare
QEN71_RS23370 -3.3 -2.3 arginine/ornithine succinyltransferase subunit alpha compare
QEN71_RS28035 -3.3 -10.9 3-dehydroquinate synthase compare
QEN71_RS03690 -3.3 -3.2 porin compare
QEN71_RS25700 -3.3 -2.3 DegT/DnrJ/EryC1/StrS family aminotransferase compare
QEN71_RS38635 -3.3 -8.6 methyl-accepting chemotaxis protein compare
QEN71_RS24235 -3.3 -4.1 DUF3619 family protein compare
QEN71_RS17650 -3.2 -2.2 site-specific DNA-methyltransferase compare
QEN71_RS21915 -3.2 -6.7 peptidylprolyl isomerase compare
QEN71_RS03785 -3.2 -2.2 aminopeptidase N compare
QEN71_RS02575 -3.2 -9.7 metal ABC transporter solute-binding protein compare
QEN71_RS35030 -3.2 -9.0 efflux transporter outer membrane subunit compare
QEN71_RS27895 -3.1 -2.1 STAS domain-containing protein compare
QEN71_RS27785 -3.1 -2.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
QEN71_RS16540 -3.1 -9.9 L-threonine 3-dehydrogenase compare
QEN71_RS02150 -3.1 -2.1 lysophospholipid acyltransferase family protein compare
QEN71_RS16515 -3.1 -2.1 DNA-binding protein compare
QEN71_RS25690 -3.1 -2.1 glycosyltransferase family 4 protein compare
QEN71_RS29130 -3.1 -11.0 tetratricopeptide repeat protein compare
QEN71_RS23015 -3.1 -9.6 RNA chaperone Hfq compare
QEN71_RS03260 -3.1 -2.1 UbiD family decarboxylase compare
QEN71_RS24240 -3.1 -7.2 DUF3106 domain-containing protein compare
QEN71_RS27920 -3.1 -2.1 ABC transporter ATP-binding protein compare
QEN71_RS24450 -3.1 -16.2 O-antigen ligase family protein compare
QEN71_RS25720 -3.0 -3.0 SAM-dependent methyltransferase compare
QEN71_RS21980 -3.0 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
QEN71_RS42150 -3.0 -6.1 hypothetical protein compare
QEN71_RS05985 -3.0 -4.5 tetratricopeptide repeat protein compare
QEN71_RS28065 -3.0 -2.1 penicillin-binding protein 1A compare
QEN71_RS15225 -3.0 -6.0 GTP cyclohydrolase FolE2 compare
QEN71_RS16170 -3.0 -2.6 periplasmic heavy metal sensor compare
QEN71_RS26780 -2.9 -3.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
QEN71_RS02995 -2.9 -2.9 cold shock domain-containing protein CspD compare
QEN71_RS01545 -2.9 -3.5 heme o synthase compare
QEN71_RS16405 -2.9 -4.4 ABC transporter substrate-binding protein compare
QEN71_RS33155 -2.9 -5.8 DUF802 domain-containing protein compare
QEN71_RS06190 -2.9 -2.0 C40 family peptidase compare
QEN71_RS39265 -2.9 -1.6 LysR family transcriptional regulator compare
QEN71_RS02230 -2.9 -9.1 glycerol kinase GlpK compare
QEN71_RS01440 -2.8 -3.8 S41 family peptidase compare
QEN71_RS02525 -2.7 -17.0 efflux RND transporter permease subunit compare
QEN71_RS24825 -2.7 -3.2 nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein compare
QEN71_RS28105 -2.7 -1.9 c-type cytochrome compare
QEN71_RS07300 -2.7 -7.4 Lrp/AsnC family transcriptional regulator compare
QEN71_RS22415 -2.7 -9.2 Mth938-like domain-containing protein compare
QEN71_RS08645 -2.7 -1.8 GTP cyclohydrolase II compare
QEN71_RS37590 -2.7 -2.2 DUF4148 domain-containing protein compare
QEN71_RS04405 -2.7 -12.0 DUF4088 family protein compare
QEN71_RS14065 -2.7 -2.1 hypothetical protein compare
QEN71_RS22510 -2.7 -3.6 anti-sigma factor compare
QEN71_RS26950 -2.7 -1.8 LPS assembly lipoprotein LptE compare
QEN71_RS29030 -2.7 -14.9 flagellar transcriptional regulator FlhC compare
QEN71_RS21955 -2.7 -10.8 SurA N-terminal domain-containing protein compare


Specific Phenotypes

None in this experiment

For Paraburkholderia sabiae LMG 24235 in motility experiments