Experiment set1S527 for Alteromonas macleodii MIT1002

Compare to:

Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment B, time point 1

200 most important genes:

  gene name fitness t score description  
MIT1002_02993 -5.3 -8.7 D-3-phosphoglycerate dehydrogenase compare
MIT1002_00843 -4.7 -7.3 hypothetical protein compare
MIT1002_03978 -4.6 -3.2 General secretion pathway protein F compare
MIT1002_01497 -4.6 -1.2 tRNA-Met compare
MIT1002_03979 -4.5 -2.1 Pullulanase secretion protein PulG compare
MIT1002_03977 -4.5 -3.1 Type II traffic warden ATPase compare
MIT1002_03805 -4.4 -2.9 hypothetical protein compare
MIT1002_03982 -4.3 -3.0 PilD-dependent protein PddD compare
MIT1002_03981 -4.1 -2.2 Putative general secretion pathway protein I compare
MIT1002_01457 -4.1 -1.5 Heat shock protein 70 compare
MIT1002_04092 -4.1 -8.9 putative type I restriction enzymeP M protein compare
MIT1002_02035 -4.1 -2.4 Dihydroorotate dehydrogenase (quinone) compare
MIT1002_03976 -4.1 -2.8 Pullulanase secretion envelope PulD compare
MIT1002_03690 -4.0 -11.8 DnaK suppressor protein compare
MIT1002_00160 -4.0 -5.6 Diaminopimelate decarboxylase compare
MIT1002_03983 -3.9 -2.7 Putative general secretion pathway protein K compare
MIT1002_04093 -3.8 -1.4 Type I restriction modification DNA specificity domain protein compare
MIT1002_03984 -3.5 -2.4 General secretion pathway protein L compare
MIT1002_00884 -3.4 -2.8 hypothetical protein compare
MIT1002_00094 -3.3 -1.3 sulfur carrier protein ThiS compare
MIT1002_04124 -3.2 -2.2 Glucose-inhibited division protein A compare
MIT1002_03980 -3.2 -4.2 General secretion pathway protein H compare
MIT1002_03486 -3.1 -3.6 Na(+)-translocating NADH-quinone reductase subunit C compare
MIT1002_01163 -3.1 -3.0 hypothetical protein compare
MIT1002_02132 -3.1 -3.0 Cytochrome c oxidase subunit III compare
MIT1002_01168 -3.1 -2.4 Flp pilus assembly protein TadD, contains TPR repeats compare
MIT1002_00816 -3.0 -4.2 Cytochrome c1 precursor compare
MIT1002_00423 -3.0 -5.9 Aspartate carbamoyltransferase catalytic chain compare
MIT1002_03485 -3.0 -2.7 Na(+)-translocating NADH-quinone reductase subunit D compare
MIT1002_01429 -3.0 -6.4 Anthranilate synthase component II compare
MIT1002_00115 -2.9 -2.2 Iron(III)-binding periplasmic protein compare
MIT1002_00670 -2.9 -2.0 Outer membrane protein TolC precursor compare
MIT1002_03488 -2.9 -5.2 Na(+)-translocating NADH-quinone reductase subunit A compare
MIT1002_03084 -2.7 -11.0 Threonine synthase compare
MIT1002_01435 -2.6 -2.1 Ribosomal large subunit pseudouridine synthase B compare
MIT1002_00486 -2.6 -1.2 Protein-export protein SecB compare
MIT1002_02573 -2.5 -8.0 hypothetical protein compare
MIT1002_01544 -2.5 -9.4 D-alanyl-D-alanine carboxypeptidase compare
MIT1002_03085 -2.5 -6.7 Homoserine kinase compare
MIT1002_02632 -2.5 -8.5 ATP phosphoribosyltransferase compare
MIT1002_00107 -2.5 -4.0 DNA-directed RNA polymerase subunit omega compare
MIT1002_02633 -2.5 -11.6 Histidinol dehydrogenase compare
MIT1002_01638 -2.5 -3.5 Integration host factor subunit alpha compare
MIT1002_02638 -2.4 -9.0 Imidazole glycerol phosphate synthase subunit HisF compare
MIT1002_04045 -2.4 -10.6 Ketol-acid reductoisomerase compare
MIT1002_03483 -2.4 -1.7 Na(+)-translocating NADH-quinone reductase subunit F compare
MIT1002_02708 -2.4 -9.3 Phosphoserine phosphatase compare
MIT1002_02133 -2.4 -4.0 putative integral membrane protein linked to a cation pump compare
MIT1002_00815 -2.4 -3.2 Cytochrome b/c1 compare
MIT1002_03628 -2.3 -2.8 Cold shock-like protein CspG compare
MIT1002_01263 -2.2 -4.7 7-cyano-7-deazaguanine synthase compare
MIT1002_03513 -2.2 -5.4 hypothetical protein compare
MIT1002_02406 -2.2 -2.5 6-phosphogluconolactonase compare
MIT1002_03985 -2.2 -3.5 General secretion pathway protein M compare
MIT1002_00117 -2.2 -2.3 Maltose/maltodextrin import ATP-binding protein MalK compare
MIT1002_02634 -2.2 -10.0 Histidinol-phosphate aminotransferase compare
MIT1002_04036 -2.1 -2.3 LexA repressor compare
MIT1002_01984 -2.1 -6.2 queuosine biosynthesis protein QueD compare
MIT1002_02639 -2.1 -6.9 Phosphoribosyl-ATP pyrophosphatase compare
MIT1002_02211 -2.1 -10.4 TPR repeat-containing protein YfgC precursor compare
MIT1002_01264 -2.1 -5.9 7-carboxy-7-deazaguanine synthase compare
MIT1002_00485 -2.1 -6.8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
MIT1002_03086 -2.1 -11.8 Aspartokinase I/homoserine dehydrogenase I compare
MIT1002_01143 -2.1 -3.4 Phage shock protein A compare
MIT1002_00522 -2.1 -7.8 N5-carboxyaminoimidazole ribonucleotide synthase compare
MIT1002_00988 -2.0 -7.9 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
MIT1002_00454 -2.0 -4.1 Penicillin-binding protein 1A compare
MIT1002_03140 -2.0 -9.6 Glutamate synthase [NADPH] small chain compare
MIT1002_00320 -2.0 -1.9 Protein of unknown function, DUF compare
MIT1002_02405 -2.0 -6.1 Phosphogluconate dehydratase compare
MIT1002_03139 -1.9 -13.6 Glutamate synthase [NADPH] large chain precursor compare
MIT1002_01430 -1.9 -5.4 Anthranilate synthase component 1 compare
MIT1002_00189 -1.9 -10.1 Galactokinase compare
MIT1002_00467 -1.9 -10.3 Argininosuccinate lyase compare
MIT1002_03114 -1.9 -3.9 Lipoprotein activator of PBP from the outer membrane A compare
MIT1002_01035 -1.9 -3.2 anti-sigma28 factor FlgM compare
MIT1002_02636 -1.8 -5.6 Imidazole glycerol phosphate synthase subunit HisH compare
MIT1002_00471 -1.8 -10.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
MIT1002_00377 -1.8 -7.6 Branched-chain-amino-acid aminotransferase 2 compare
MIT1002_01925 -1.8 -1.3 hypothetical protein compare
MIT1002_02188 -1.8 -2.4 Integration host factor subunit beta compare
MIT1002_00947 -1.8 -10.4 3-isopropylmalate dehydratase large subunit compare
MIT1002_01466 -1.8 -5.9 Carbamoyl-phosphate synthase small chain compare
MIT1002_01295 -1.8 -3.9 Inner membrane protein YpjD compare
MIT1002_02635 -1.7 -8.4 Histidine biosynthesis bifunctional protein HisB compare
MIT1002_01467 -1.7 -10.7 Carbamoyl-phosphate synthase large chain compare
MIT1002_04050 -1.7 -1.5 hypothetical protein compare
MIT1002_00055 -1.7 -1.7 50S ribosomal protein L33 compare
MIT1002_04041 -1.7 -9.0 Dihydroxy-acid dehydratase compare
MIT1002_02220 -1.7 -7.3 Phosphoribosylglycinamide formyltransferase compare
MIT1002_02718 -1.7 -3.0 Sigma-E factor negative regulatory protein compare
MIT1002_00076 -1.7 -3.1 transcriptional regulator, y4mF family compare
MIT1002_02637 -1.7 -6.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MIT1002_03109 -1.7 -3.0 Saccharopine dehydrogenase compare
MIT1002_02785 -1.7 -4.7 Outer membrane protein assembly factor BamB precursor compare
MIT1002_02760 -1.7 -3.1 ATP-dependent Clp protease proteolytic subunit precursor compare
MIT1002_02817 -1.6 -4.8 PspA/IM30 family protein compare
MIT1002_02812 -1.6 -2.9 preprotein translocase subunit YajC compare
MIT1002_00948 -1.6 -8.5 3-isopropylmalate dehydrogenase compare
MIT1002_03658 -1.6 -3.6 putative zinc finger/helix-turn-helix protein, YgiT family compare
MIT1002_03516 -1.6 -9.0 Acetyl-coenzyme A synthetase compare
MIT1002_00814 -1.6 -3.3 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
MIT1002_03786 -1.6 -7.2 Modulator of FtsH protease HflK compare
MIT1002_02266 -1.6 -6.2 Methionine gamma-lyase compare
MIT1002_00949 -1.6 -9.3 2-isopropylmalate synthase compare
MIT1002_00074 -1.6 -2.4 tRNA-Arg compare
MIT1002_00424 -1.6 -6.8 Solvent efflux pump srpABC operon corepressor compare
MIT1002_00188 -1.6 -6.9 Galactose-1-phosphate uridylyltransferase compare
MIT1002_01979 -1.6 -7.2 Carnitinyl-CoA dehydratase compare
MIT1002_02831 -1.6 -9.3 Isocitrate lyase compare
MIT1002_02433 -1.5 -2.1 2-dehydro-3-deoxy-phosphogluconate aldolase compare
MIT1002_02404 -1.5 -4.1 Glucokinase compare
MIT1002_00468 -1.5 -6.7 Argininosuccinate synthase compare
MIT1002_03484 -1.5 -1.8 Na(+)-translocating NADH-quinone reductase subunit E compare
MIT1002_00470 -1.5 -7.1 Acetylglutamate kinase compare
MIT1002_00946 -1.5 -4.7 3-isopropylmalate dehydratase small subunit 1 compare
MIT1002_00466 -1.5 -7.6 Amino-acid acetyltransferase compare
MIT1002_03130 -1.5 -6.4 2-methylcitrate synthase compare
MIT1002_02810 -1.5 -5.8 preprotein translocase subunit SecF compare
MIT1002_02524 -1.5 -9.2 Amidophosphoribosyltransferase compare
MIT1002_00437 -1.5 -7.0 Succinylornithine transaminase/acetylornithine aminotransferase compare
MIT1002_03961 -1.5 -9.3 Phosphoribosylamine--glycine ligase compare
MIT1002_02832 -1.5 -5.5 Nodulation protein D 2 compare
MIT1002_02024 -1.5 -2.2 ProP effector compare
MIT1002_00161 -1.5 -3.3 putative small periplasmic lipoprotein compare
MIT1002_03785 -1.5 -7.4 Modulator of FtsH protease HflC compare
MIT1002_01428 -1.5 -4.3 Anthranilate synthase component II compare
MIT1002_02516 -1.4 -1.4 Invasion protein B, involved in pathogenesis compare
MIT1002_03371 -1.4 -1.6 HTH-type transcriptional repressor FabR compare
MIT1002_01266 -1.4 -5.8 Asparagine synthetase B [glutamine-hydrolyzing] compare
MIT1002_00469 -1.4 -7.2 Ornithine carbamoyltransferase compare
MIT1002_02219 -1.4 -6.9 Phosphoribosylformylglycinamidine cyclo-ligase compare
MIT1002_02429 -1.4 -6.0 Glucose-resistance amylase regulator compare
MIT1002_03062 -1.4 -3.3 Pyrroline-5-carboxylate reductase compare
MIT1002_00111 -1.4 -3.6 ATP-dependent DNA helicase RecG compare
MIT1002_00521 -1.3 -2.7 N5-carboxyaminoimidazole ribonucleotide mutase compare
MIT1002_01027 -1.3 -10.6 Phosphoribosylformylglycinamidine synthase compare
MIT1002_02811 -1.3 -7.2 preprotein translocase subunit SecD compare
MIT1002_01427 -1.3 -2.4 Tryptophan biosynthesis protein TrpCF compare
MIT1002_03567 -1.3 -4.9 mycofactocin system glycosyltransferase compare
MIT1002_02218 -1.3 -2.1 hypothetical protein compare
MIT1002_02833 -1.3 -8.6 Malate synthase G compare
MIT1002_03806 -1.3 -2.8 hypothetical protein compare
MIT1002_03263 -1.3 -2.1 hypothetical protein compare
MIT1002_00752 -1.3 -2.7 Phosphate regulon sensor protein PhoR compare
MIT1002_04135 -1.3 -7.7 ParB/RepB/Spo0J family partition protein compare
MIT1002_00503 -1.3 -6.5 Acetolactate synthase isozyme 3 large subunit compare
MIT1002_03423 -1.2 -1.4 hypothetical protein compare
MIT1002_01112 -1.2 -5.1 Homoserine O-succinyltransferase compare
MIT1002_02390 -1.2 -3.0 hypothetical protein compare
MIT1002_02394 -1.2 -4.8 Glyceraldehyde-3-phosphate dehydrogenase compare
MIT1002_01687 -1.2 -1.4 hypothetical protein compare
MIT1002_02184 -1.2 -1.5 Orotidine 5'-phosphate decarboxylase compare
MIT1002_01917 -1.2 -2.6 hypothetical protein compare
MIT1002_02400 -1.2 -6.6 4-alpha-glucanotransferase compare
MIT1002_03294 -1.2 -2.2 hypothetical protein compare
MIT1002_01971 -1.2 -4.7 hypothetical protein compare
MIT1002_01815 -1.2 -4.1 Phosphoenolpyruvate synthase regulatory protein compare
MIT1002_03002 -1.2 -2.7 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex compare
MIT1002_02136 -1.2 -2.9 hypothetical protein compare
MIT1002_01704 -1.2 -3.8 N-succinylarginine dihydrolase compare
MIT1002_03179 -1.2 -6.4 Cystathionine beta-lyase PatB compare
MIT1002_03055 -1.2 -3.6 Glutathione synthetase compare
MIT1002_01129 -1.2 -1.9 Carbon storage regulator compare
MIT1002_00681 -1.2 -3.5 L-lysine 2,3-aminomutase compare
MIT1002_02129 -1.1 -3.0 hypothetical protein compare
MIT1002_02757 -1.1 -6.3 Lon protease compare
MIT1002_02581 -1.1 -2.3 Disulfide oxidoreductase compare
MIT1002_03493 -1.1 -2.9 Arginine repressor compare
MIT1002_03110 -1.1 -2.9 Carboxynorspermidine/carboxyspermidine decarboxylase compare
MIT1002_04040 -1.1 -7.1 L-threonine dehydratase biosynthetic IlvA compare
MIT1002_04134 -1.1 -7.5 Sporulation initiation inhibitor protein soj compare
MIT1002_02014 -1.1 -5.9 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex compare
MIT1002_03771 -1.1 -3.6 N-acetylglucosamine repressor compare
MIT1002_04120 -1.1 -1.0 F0F1 ATP synthase subunit I compare
MIT1002_02972 -1.1 -4.3 Glycine cleavage system H protein compare
MIT1002_04171 -1.1 -1.7 hypothetical protein compare
MIT1002_02715 -1.1 -1.9 Elongation factor 4 compare
MIT1002_02971 -1.1 -7.2 Glycine dehydrogenase [decarboxylating] compare
MIT1002_04122 -1.1 -2.4 Sporulation initiation inhibitor protein soj compare
MIT1002_02369 -1.1 -3.2 hypothetical protein compare
MIT1002_00575 -1.1 -7.6 Fatty acid oxidation complex subunit alpha compare
MIT1002_01885 -1.1 -4.6 Gamma-glutamyl phosphate reductase compare
MIT1002_03539 -1.1 -1.8 Bifunctional protein BirA compare
MIT1002_00955 -1.1 -2.1 Recombinase A compare
MIT1002_02677 -1.1 -6.6 Heat shock protein F84.1 compare
MIT1002_02879 -1.1 -6.8 Glutamate-ammonia-ligase adenylyltransferase compare
MIT1002_03096 -1.1 -5.6 Isocitrate dehydrogenase kinase/phosphatase compare
MIT1002_00108 -1.1 -3.4 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MIT1002_00351 -1.0 -5.5 Degradation activator compare
MIT1002_02991 -1.0 -2.7 putative 5-formyltetrahydrofolate cyclo-ligase compare
MIT1002_03975 -1.0 -1.9 General secretion pathway protein C compare
MIT1002_00436 -1.0 -2.4 Arginine N-succinyltransferase subunit beta compare
MIT1002_02653 -1.0 -0.9 Nucleoid-associated protein YbaB compare
MIT1002_00398 -1.0 -1.2 hypothetical protein compare
MIT1002_01277 -1.0 -3.5 hypothetical protein compare
MIT1002_01222 -1.0 -0.9 Glutamate--cysteine ligase compare
MIT1002_01011 -1.0 -2.6 Regulator of sigma E protease compare
MIT1002_02973 -1.0 -5.4 Aminomethyltransferase compare
MIT1002_02013 -1.0 -5.0 2-oxoisovalerate dehydrogenase subunit beta compare


Specific Phenotypes

None in this experiment

For Alteromonas macleodii MIT1002 in mixed community experiments

For mixed community Mixed culture; Prochlorococcus marinus str. MIT9313 10:1 starting OD to HP15 across organisms