Experiment set1S526 for Paraburkholderia sabiae LMG 24235

Compare to:

Motility_outer_sample_with_outgrowth

200 most important genes:

  gene name fitness t score description  
QEN71_RS20125 -9.6 -6.6 flagellar transcriptional regulator FlhD compare
QEN71_RS29035 -8.2 -8.0 flagellar transcriptional regulator FlhD compare
QEN71_RS20120 -7.6 -11.7 flagellar transcriptional regulator FlhC compare
QEN71_RS00505 -7.6 -7.4 response regulator transcription factor RqpR compare
QEN71_RS28795 -7.6 -5.2 flagellar basal-body MS-ring/collar protein FliF compare
QEN71_RS28830 -7.4 -7.3 flagellar motor switch protein FliM compare
QEN71_RS29025 -7.2 -5.0 flagellar motor stator protein MotA compare
QEN71_RS28980 -7.2 -5.0 chemotaxis response regulator CheY compare
QEN71_RS28850 -7.1 -4.9 flagellar biosynthesis protein FliQ compare
QEN71_RS28800 -7.1 -4.9 flagellar motor switch protein FliG compare
QEN71_RS29005 -7.0 -4.8 chemotaxis protein CheW compare
QEN71_RS28950 -6.9 -4.8 flagellar biosynthesis protein FlhF compare
QEN71_RS28845 -6.9 -8.2 flagellar type III secretion system pore protein FliP compare
QEN71_RS16430 -6.9 -4.7 squalene--hopene cyclase compare
QEN71_RS15185 -6.8 -4.7 RNA polymerase sigma factor RpoD compare
QEN71_RS22025 -6.8 -9.8 hypothetical protein compare
QEN71_RS28785 -6.7 -4.6 flagellar export chaperone FliS compare
QEN71_RS28825 -6.7 -6.5 flagellar basal body-associated protein FliL compare
QEN71_RS28985 -6.6 -4.5 chemotaxis response regulator protein-glutamate methylesterase compare
QEN71_RS28820 -6.5 -4.5 flagellar hook-length control protein FliK compare
QEN71_RS28815 -6.3 -4.3 flagellar export protein FliJ compare
QEN71_RS29135 -6.2 -4.3 glycosyltransferase compare
QEN71_RS04725 -6.2 -20.6 glycosyltransferase family 4 protein compare
QEN71_RS27005 -6.2 -6.0 type I glyceraldehyde-3-phosphate dehydrogenase compare
QEN71_RS28975 -6.2 -4.3 protein phosphatase CheZ compare
QEN71_RS28855 -6.1 -6.0 flagellar biosynthetic protein FliR compare
QEN71_RS28860 -6.1 -4.2 flagellar hook-associated protein FlgL compare
QEN71_RS29010 -6.1 -4.2 chemotaxis protein CheA compare
QEN71_RS32200 -6.0 -7.0 MarR family transcriptional regulator compare
QEN71_RS29090 -6.0 -4.2 flagellin domain-containing protein compare
QEN71_RS29495 -6.0 -4.1 HU family DNA-binding protein compare
QEN71_RS28865 -6.0 -5.8 flagellar hook-associated protein FlgK compare
QEN71_RS28810 -5.9 -4.1 flagellar protein export ATPase FliI compare
QEN71_RS02265 -5.8 -4.0 DEAD/DEAH box helicase compare
QEN71_RS28840 -5.8 -10.5 flagellar biosynthetic protein FliO compare
QEN71_RS00360 -5.8 -4.0 DUF484 family protein compare
QEN71_RS28955 -5.8 -4.0 flagellar biosynthesis protein FlhA compare
QEN71_RS37145 -5.8 -3.2 TetR family transcriptional regulator compare
QEN71_RS28960 -5.8 -4.0 flagellar biosynthesis protein FlhB compare
QEN71_RS28995 -5.8 -7.9 CheR family methyltransferase compare
QEN71_RS01445 -5.7 -6.8 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
QEN71_RS21425 -5.7 -5.5 HAMP domain-containing sensor histidine kinase compare
QEN71_RS28990 -5.6 -3.9 chemoreceptor glutamine deamidase CheD compare
QEN71_RS28930 -5.6 -6.7 flagellar biosynthesis anti-sigma factor FlgM compare
QEN71_RS28805 -5.6 -5.5 flagellar assembly protein FliH compare
QEN71_RS17600 -5.4 -19.8 citrate synthase compare
QEN71_RS22425 -5.4 -10.3 SMR family transporter compare
QEN71_RS28095 -5.4 -6.4 c-type cytochrome biogenesis protein CcsB compare
QEN71_RS17630 -5.3 -3.7 FimV/HubP family polar landmark protein compare
QEN71_RS28890 -5.2 -3.6 flagellar basal body L-ring protein FlgH compare
QEN71_RS28935 -5.2 -3.6 flagellar protein FlgN compare
QEN71_RS42215 -5.0 -3.7 4Fe-4S dicluster domain-containing protein compare
QEN71_RS22250 -5.0 -7.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
QEN71_RS03520 -5.0 -3.4 septum site-determining protein MinD compare
QEN71_RS07825 -5.0 -16.9 cytochrome ubiquinol oxidase subunit I compare
QEN71_RS26895 -4.9 -3.4 LysR substrate-binding domain-containing protein compare
QEN71_RS21065 -4.9 -1.9 sigma factor-like helix-turn-helix DNA-binding protein compare
QEN71_RS23945 -4.9 -3.4 5S ribosomal RNA compare
QEN71_RS38865 -4.9 -3.4 Ohr family peroxiredoxin compare
QEN71_RS24565 -4.9 -4.7 DUF1841 family protein compare
QEN71_RS29155 -4.8 -12.5 WbqC family protein compare
QEN71_RS02425 -4.8 -3.3 phosphoglycerate kinase compare
QEN71_RS28880 -4.8 -3.3 flagellar assembly peptidoglycan hydrolase FlgJ compare
QEN71_RS00180 -4.7 -3.3 DUF4390 domain-containing protein compare
QEN71_RS01165 -4.6 -5.5 thiol:disulfide interchange protein DsbA/DsbL compare
QEN71_RS17085 -4.6 -15.6 PAS domain-containing methyl-accepting chemotaxis protein compare
QEN71_RS21975 -4.6 -3.2 endopeptidase La compare
QEN71_RS01745 -4.6 -3.2 PTS sugar transporter subunit IIA compare
QEN71_RS06505 -4.5 -3.1 phosphoenolpyruvate synthase compare
QEN71_RS05685 -4.5 -1.7 tRNA-Met compare
QEN71_RS28910 -4.5 -6.1 flagellar hook assembly protein FlgD compare
QEN71_RS25070 -4.4 -3.0 aspartate 1-decarboxylase compare
QEN71_RS23330 -4.4 -22.6 sensor domain-containing phosphodiesterase compare
QEN71_RS22490 -4.4 -3.0 50S ribosomal protein L9 compare
QEN71_RS28895 -4.4 -3.0 flagellar basal-body rod protein FlgG compare
QEN71_RS28905 -4.3 -6.0 flagellar hook protein FlgE compare
QEN71_RS04720 -4.3 -16.0 ABC transporter ATP-binding protein compare
QEN71_RS28885 -4.3 -2.9 flagellar basal body P-ring protein FlgI compare
QEN71_RS43315 -4.3 -7.6 helix-turn-helix transcriptional regulator compare
QEN71_RS16425 -4.3 -4.1 phosphorylase compare
QEN71_RS14065 -4.2 -2.8 hypothetical protein compare
QEN71_RS29100 -4.2 -1.6 flagellar protein FliT compare
QEN71_RS03515 -4.2 -2.9 septum site-determining protein MinC compare
QEN71_RS33165 -4.2 -5.7 DUF2894 domain-containing protein compare
QEN71_RS29020 -4.2 -7.7 flagellar motor protein MotB compare
QEN71_RS16400 -4.1 -4.9 adenosyl-hopene transferase HpnH compare
QEN71_RS28925 -4.1 -2.8 flagellar basal body P-ring formation chaperone FlgA compare
QEN71_RS29145 -4.1 -18.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
QEN71_RS28915 -4.1 -2.8 flagellar basal body rod protein FlgC compare
QEN71_RS00185 -4.0 -4.8 PAS domain-containing sensor histidine kinase compare
QEN71_RS02575 -4.0 -8.9 metal ABC transporter solute-binding protein compare
QEN71_RS25715 -4.0 -2.8 acetyltransferase compare
QEN71_RS17545 -4.0 -3.9 hypothetical protein compare
QEN71_RS04785 -4.0 -6.6 transcription elongation factor GreA compare
QEN71_RS04585 -4.0 -10.3 MucB/RseB C-terminal domain-containing protein compare
QEN71_RS29160 -4.0 -13.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
QEN71_RS26775 -4.0 -2.7 Fis family transcriptional regulator compare
QEN71_RS01820 -4.0 -15.5 AI-2E family transporter compare
QEN71_RS16375 -3.9 -15.2 NAD-dependent epimerase/dehydratase family protein compare
QEN71_RS02440 -3.9 -3.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
QEN71_RS06045 -3.9 -4.6 Tex family protein compare
QEN71_RS29165 -3.9 -14.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
QEN71_RS25730 -3.9 -5.3 ABC transporter permease compare
QEN71_RS25205 -3.8 -3.7 leucyl aminopeptidase compare
QEN71_RS02355 -3.8 -22.3 succinate--CoA ligase subunit alpha compare
QEN71_RS29110 -3.8 -19.2 tetratricopeptide repeat protein compare
QEN71_RS28940 -3.8 -2.6 RNA polymerase sigma factor FliA compare
QEN71_RS16440 -3.8 -2.6 presqualene diphosphate synthase HpnD compare
QEN71_RS26275 -3.8 -2.6 tol-pal system protein YbgF compare
QEN71_RS02350 -3.7 -24.1 ADP-forming succinate--CoA ligase subunit beta compare
QEN71_RS24220 -3.7 -4.9 acetolactate synthase small subunit compare
QEN71_RS27675 -3.7 -2.5 peptide chain release factor N(5)-glutamine methyltransferase compare
QEN71_RS28900 -3.7 -2.5 flagellar basal-body rod protein FlgF compare
QEN71_RS27915 -3.7 -2.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
QEN71_RS27190 -3.7 -4.4 carbohydrate kinase family protein compare
QEN71_RS15190 -3.7 -3.8 hypothetical protein compare
QEN71_RS02570 -3.6 -10.7 ABC transporter ATP-binding protein compare
QEN71_RS27900 -3.6 -2.5 ABC transporter substrate-binding protein compare
QEN71_RS03690 -3.6 -2.5 porin compare
QEN71_RS02565 -3.6 -4.3 metal ABC transporter permease compare
QEN71_RS22255 -3.6 -13.2 5'/3'-nucleotidase SurE compare
QEN71_RS26480 -3.6 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
QEN71_RS03675 -3.6 -4.9 tRNA-Arg compare
QEN71_RS25420 -3.6 -6.4 oligosaccharide flippase family protein compare
QEN71_RS04710 -3.6 -11.5 trehalose-phosphatase compare
QEN71_RS28920 -3.6 -1.9 flagellar basal body rod protein FlgB compare
QEN71_RS21935 -3.6 -2.5 glucose-6-phosphate isomerase compare
QEN71_RS05615 -3.6 -2.4 oxidative damage protection protein compare
QEN71_RS24465 -3.6 -7.2 glycosyltransferase family 2 protein compare
QEN71_RS25710 -3.6 -2.5 GNAT family N-acetyltransferase compare
QEN71_RS05450 -3.5 -2.4 outer membrane protein assembly factor BamC compare
QEN71_RS03745 -3.5 -4.2 TlpA family protein disulfide reductase compare
QEN71_RS25055 -3.5 -2.4 DUF3460 family protein compare
QEN71_RS25725 -3.5 -9.8 ABC transporter ATP-binding protein compare
QEN71_RS22015 -3.5 -9.0 squalene/phytoene synthase family protein compare
QEN71_RS29450 -3.5 -2.4 SET domain-containing protein-lysine N-methyltransferase compare
QEN71_RS04715 -3.5 -18.4 alpha,alpha-trehalose-phosphate synthase (UDP-forming) compare
QEN71_RS03930 -3.5 -13.2 disulfide bond formation protein B compare
QEN71_RS16540 -3.5 -12.4 L-threonine 3-dehydrogenase compare
QEN71_RS23370 -3.4 -2.4 arginine/ornithine succinyltransferase subunit alpha compare
QEN71_RS29185 -3.4 -12.0 UvrD-helicase domain-containing protein compare
QEN71_RS25700 -3.4 -2.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
QEN71_RS22330 -3.4 -2.3 glycosyltransferase family 39 protein compare
QEN71_RS05840 -3.4 -2.3 regulator compare
QEN71_RS28035 -3.4 -13.6 3-dehydroquinate synthase compare
QEN71_RS35025 -3.4 -13.6 efflux RND transporter permease subunit compare
QEN71_RS07820 -3.3 -7.5 cytochrome d ubiquinol oxidase subunit II compare
QEN71_RS24430 -3.3 -4.6 ribonuclease G compare
QEN71_RS25425 -3.3 -4.5 glycosyltransferase compare
QEN71_RS35030 -3.3 -10.7 efflux transporter outer membrane subunit compare
QEN71_RS03785 -3.3 -2.3 aminopeptidase N compare
QEN71_RS27895 -3.3 -2.2 STAS domain-containing protein compare
QEN71_RS02150 -3.2 -2.2 lysophospholipid acyltransferase family protein compare
QEN71_RS25720 -3.2 -2.2 SAM-dependent methyltransferase compare
QEN71_RS27785 -3.2 -2.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
QEN71_RS07090 -3.2 -8.0 ABC-F family ATPase compare
QEN71_RS24240 -3.2 -8.2 DUF3106 domain-containing protein compare
QEN71_RS38635 -3.2 -9.0 methyl-accepting chemotaxis protein compare
QEN71_RS07305 -3.2 -11.2 saccharopine dehydrogenase NADP-binding domain-containing protein compare
QEN71_RS27920 -3.2 -2.2 ABC transporter ATP-binding protein compare
QEN71_RS25690 -3.2 -2.2 glycosyltransferase family 4 protein compare
QEN71_RS03260 -3.2 -2.2 UbiD family decarboxylase compare
QEN71_RS26780 -3.2 -3.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
QEN71_RS21980 -3.1 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
QEN71_RS16405 -3.1 -4.2 ABC transporter substrate-binding protein compare
QEN71_RS17650 -3.1 -3.0 site-specific DNA-methyltransferase compare
QEN71_RS27685 -3.1 -3.0 UbiX family flavin prenyltransferase compare
QEN71_RS04890 -3.1 -2.3 hypothetical protein compare
QEN71_RS27260 -3.1 -17.2 RNA pyrophosphohydrolase compare
QEN71_RS25630 -3.1 -3.6 NAD-dependent epimerase/dehydratase family protein compare
QEN71_RS28065 -3.1 -2.1 penicillin-binding protein 1A compare
QEN71_RS02995 -3.1 -3.0 cold shock domain-containing protein CspD compare
QEN71_RS24450 -3.0 -17.2 O-antigen ligase family protein compare
QEN71_RS01440 -3.0 -2.9 S41 family peptidase compare
QEN71_RS05780 -3.0 -2.1 Fe-S cluster assembly transcriptional regulator IscR compare
QEN71_RS27600 -3.0 -5.7 redox-regulated ATPase YchF compare
QEN71_RS42625 -3.0 -1.6 HypC/HybG/HupF family hydrogenase formation chaperone compare
QEN71_RS06190 -3.0 -2.0 C40 family peptidase compare
QEN71_RS29130 -3.0 -11.1 tetratricopeptide repeat protein compare
QEN71_RS28070 -2.9 -3.2 iron donor protein CyaY compare
QEN71_RS24395 -2.9 -6.6 YebC/PmpR family DNA-binding transcriptional regulator compare
QEN71_RS02525 -2.9 -18.0 efflux RND transporter permease subunit compare
QEN71_RS24830 -2.9 -3.9 ABC transporter permease subunit compare
QEN71_RS22745 -2.9 -6.6 tRNA-Met compare
QEN71_RS15225 -2.8 -6.5 GTP cyclohydrolase FolE2 compare
QEN71_RS27795 -2.8 -8.5 Do family serine endopeptidase compare
QEN71_RS28105 -2.8 -1.9 c-type cytochrome compare
QEN71_RS26950 -2.8 -1.9 LPS assembly lipoprotein LptE compare
QEN71_RS25705 -2.8 -1.9 FdtA/QdtA family cupin domain-containing protein compare
QEN71_RS07300 -2.8 -8.6 Lrp/AsnC family transcriptional regulator compare
QEN71_RS03645 -2.8 -3.2 ribonuclease PH compare
QEN71_RS08645 -2.8 -1.9 GTP cyclohydrolase II compare
QEN71_RS21955 -2.7 -11.5 SurA N-terminal domain-containing protein compare
QEN71_RS04795 -2.7 -7.5 YhbY family RNA-binding protein compare
QEN71_RS29030 -2.7 -16.3 flagellar transcriptional regulator FlhC compare
QEN71_RS25695 -2.7 -8.7 glycosyltransferase family 4 protein compare
QEN71_RS04405 -2.6 -12.2 DUF4088 family protein compare
QEN71_RS04765 -2.6 -19.2 transglycosylase SLT domain-containing protein compare
QEN71_RS22400 -2.6 -9.2 threonine synthase compare
QEN71_RS22510 -2.6 -4.3 anti-sigma factor compare


Specific Phenotypes

None in this experiment

For Paraburkholderia sabiae LMG 24235 in motility experiments