Experiment set1S52 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

200 most important genes:

  gene name fitness t score description  
MPMX19_03906 -4.3 -16.0 Pca regulon regulatory protein compare
MPMX19_02980 -3.7 -3.4 Hydrogen cyanide synthase subunit HcnA compare
MPMX19_06610 -3.2 -3.0 hypothetical protein compare
MPMX19_00126 -3.1 -4.1 hypothetical protein compare
MPMX19_06327 -3.0 -2.9 hypothetical protein compare
MPMX19_00705 -3.0 -2.0 Cell division coordinator CpoB compare
MPMX19_01395 -3.0 -2.7 hypothetical protein compare
MPMX19_01054 -2.8 -6.1 Aspartate carbamoyltransferase compare
MPMX19_00530 -2.7 -4.5 Orotate phosphoribosyltransferase compare
MPMX19_05680 -2.7 -4.4 Cell cycle response regulator CtrA compare
MPMX19_04112 -2.6 -5.8 hypothetical protein compare
MPMX19_01084 -2.3 -6.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX19_04000 -2.3 -4.9 Flagellar motor switch protein FliG compare
MPMX19_04114 -2.2 -4.4 hypothetical protein compare
MPMX19_06547 -2.2 -5.9 hypothetical protein compare
MPMX19_04208 -2.2 -4.5 flagellum biosynthesis repressor protein FlbT compare
MPMX19_02267 -2.1 -1.4 hypothetical protein compare
MPMX19_02303 -2.1 -3.4 hypothetical protein compare
MPMX19_04087 -2.1 -4.3 Flagellum site-determining protein YlxH compare
MPMX19_01053 -2.1 -4.1 Dihydroorotase compare
MPMX19_04092 -2.0 -8.5 Flagellar motor switch protein FliN compare
MPMX19_02657 -2.0 -15.7 Glutamate synthase [NADPH] large chain compare
MPMX19_00858 -1.9 -6.1 Flagellar biosynthetic protein FliP compare
MPMX19_01597 -1.9 -2.9 23S rRNA (uridine(2479)-2'-O)-methyltransferase compare
MPMX19_01497 -1.9 -4.0 hypothetical protein compare
MPMX19_01613 -1.9 -4.1 hypothetical protein compare
MPMX19_01483 -1.9 -11.1 Flagellar basal-body rod protein FlgG compare
MPMX19_02658 -1.9 -11.8 Glutamate synthase [NADPH] small chain compare
MPMX19_01718 -1.9 -3.0 Ribosomal large subunit pseudouridine synthase C compare
MPMX19_00862 -1.8 -9.5 hypothetical protein compare
MPMX19_01484 -1.8 -7.0 Flagellar basal-body rod protein FlgG compare
MPMX19_00863 -1.8 -8.2 Flagellar basal-body rod protein FlgC compare
MPMX19_05023 -1.8 -2.4 hypothetical protein compare
MPMX19_00867 -1.8 -12.2 Flagellar biosynthetic protein FlhB compare
MPMX19_00838 -1.8 -3.5 GTP pyrophosphokinase rsh compare
MPMX19_00128 -1.8 -10.2 hypothetical protein compare
MPMX19_00694 -1.8 -2.6 2',3'-cyclic-nucleotide 2'-phosphodiesterase compare
MPMX19_04094 -1.7 -9.6 Flagellar M-ring protein compare
MPMX19_01394 -1.7 -1.8 hypothetical protein compare
MPMX19_05679 -1.7 -7.8 Flagellum-specific ATP synthase compare
MPMX19_01714 -1.7 -2.0 tRNA-modifying protein YgfZ compare
MPMX19_05358 -1.7 -2.2 hypothetical protein compare
MPMX19_02664 -1.7 -1.9 Arabinose 5-phosphate isomerase KdsD compare
MPMX19_03157 -1.7 -2.5 hypothetical protein compare
MPMX19_01630 -1.7 -4.5 Phosphoribosylamine--glycine ligase compare
MPMX19_04222 -1.6 -11.5 hypothetical protein compare
MPMX19_02742 -1.6 -3.0 hypothetical protein compare
MPMX19_02268 -1.6 -3.6 hypothetical protein compare
MPMX19_04218 -1.6 -5.9 Protein phosphatase PrpC compare
MPMX19_02981 -1.5 -5.4 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_01014 -1.5 -3.6 Indole-3-glycerol phosphate synthase compare
MPMX19_00866 -1.5 -7.3 Flagellar biosynthetic protein FliR compare
MPMX19_02543 -1.5 -2.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX19_04835 -1.5 -3.1 hypothetical protein compare
MPMX19_05459 -1.5 -1.8 hypothetical protein compare
MPMX19_03870 -1.4 -2.5 L-aspartate dehydrogenase compare
MPMX19_05872 -1.4 -2.8 Redox-sensitive transcriptional activator SoxR compare
MPMX19_06746 -1.4 -2.3 Chemotaxis protein CheW compare
MPMX19_05727 -1.4 -6.1 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_01495 -1.4 -2.2 hypothetical protein compare
MPMX19_05678 -1.4 -5.8 hypothetical protein compare
MPMX19_00976 -1.4 -2.3 ATP-dependent RNA helicase RhlE compare
MPMX19_03948 -1.4 -2.0 tRNA-Ser compare
MPMX19_00608 -1.4 -1.2 hypothetical protein compare
MPMX19_01015 -1.3 -4.5 Anthranilate phosphoribosyltransferase compare
MPMX19_01113 -1.3 -2.6 Adaptive-response sensory-kinase SasA compare
MPMX19_01076 -1.3 -1.8 Molybdopterin synthase catalytic subunit compare
MPMX19_01884 -1.3 -2.3 Phosphoribosylformylglycinamidine synthase subunit PurQ compare
MPMX19_00311 -1.3 -10.5 hypothetical protein compare
MPMX19_01748 -1.3 -2.6 hypothetical protein compare
MPMX19_00714 -1.3 -5.5 Ferrous-iron efflux pump FieF compare
MPMX19_06179 -1.2 -2.0 putative SURF1-like protein compare
MPMX19_01822 -1.2 -5.2 2-isopropylmalate synthase compare
MPMX19_04089 -1.2 -8.4 Flagellar biosynthesis protein FlhA compare
MPMX19_00854 -1.2 -9.9 hypothetical protein compare
MPMX19_04681 -1.2 -1.9 5-hydroxyisourate hydrolase compare
MPMX19_01918 -1.2 -1.7 tRNA-Ala compare
MPMX19_05824 -1.2 -3.3 hypothetical protein compare
MPMX19_06644 -1.2 -8.9 GDP-mannose 4,6-dehydratase compare
MPMX19_02675 -1.1 -8.2 Phosphoenolpyruvate-dependent phosphotransferase system compare
MPMX19_03123 -1.1 -1.8 Citrate lyase acyl carrier protein compare
MPMX19_01560 -1.1 -2.6 3'-5' exonuclease DinG compare
MPMX19_04093 -1.1 -3.0 hypothetical protein compare
MPMX19_01883 -1.1 -5.5 Phosphoribosylformylglycinamidine synthase subunit PurL compare
MPMX19_00304 -1.1 -2.7 Phosphatidylcholine synthase compare
MPMX19_03420 -1.1 -1.9 hypothetical protein compare
MPMX19_01050 -1.1 -1.6 hypothetical protein compare
MPMX19_04913 -1.1 -1.9 hypothetical protein compare
MPMX19_01729 -1.1 -1.8 Ethylmalonyl-CoA/methylmalonyl-CoA epimerase compare
MPMX19_06734 -1.1 -9.1 Alginate biosynthesis protein AlgA compare
MPMX19_01998 -1.1 -3.8 3-isopropylmalate dehydratase large subunit compare
MPMX19_05896 -1.1 -2.3 hypothetical protein compare
MPMX19_03425 -1.1 -2.0 hypothetical protein compare
MPMX19_02120 -1.0 -1.3 hypothetical protein compare
MPMX19_01297 -1.0 -1.7 hypothetical protein compare
MPMX19_01545 -1.0 -1.6 Lon protease compare
MPMX19_04636 -1.0 -2.3 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_01201 -1.0 -2.5 hypothetical protein compare
MPMX19_03816 -1.0 -2.0 hypothetical protein compare
MPMX19_03439 -1.0 -1.9 hypothetical protein compare
MPMX19_01304 -1.0 -5.8 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_02511 -1.0 -1.5 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase compare
MPMX19_06539 -1.0 -1.5 hypothetical protein compare
MPMX19_01496 -1.0 -5.4 hypothetical protein compare
MPMX19_05070 -1.0 -3.6 hypothetical protein compare
MPMX19_00236 -0.9 -2.4 HTH-type transcriptional regulator IscR compare
MPMX19_00182 -0.9 -1.3 hypothetical protein compare
MPMX19_05831 -0.9 -2.5 Protein/nucleic acid deglycase 2 compare
MPMX19_04462 -0.9 -3.1 Thiamine-phosphate synthase compare
MPMX19_05982 -0.9 -1.8 hypothetical protein compare
MPMX19_06892 -0.9 -2.8 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_02235 -0.9 -2.7 tRNA-Ala compare
MPMX19_04362 -0.9 -1.9 Cytidine deaminase compare
MPMX19_02177 -0.9 -2.4 Succinylornithine transaminase/acetylornithine aminotransferase compare
MPMX19_03141 -0.9 -2.0 hypothetical protein compare
MPMX19_05065 -0.9 -1.8 Farnesyl diphosphate synthase compare
MPMX19_02737 -0.9 -3.7 Tryptophan synthase alpha chain compare
MPMX19_01125 -0.9 -1.0 hypothetical protein compare
MPMX19_04937 -0.9 -2.4 Mannosyl-D-glycerate transport/metabolism system repressor MngR compare
MPMX19_04200 -0.9 -4.7 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase compare
MPMX19_03552 -0.9 -1.7 hypothetical protein compare
MPMX19_00904 -0.9 -5.0 DNA repair protein RadA compare
MPMX19_06580 -0.9 -3.5 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_00906 -0.9 -6.0 Amidophosphoribosyltransferase compare
MPMX19_01485 -0.9 -5.3 hypothetical protein compare
MPMX19_04276 -0.9 -1.8 hypothetical protein compare
MPMX19_03335 -0.9 -2.1 hypothetical protein compare
MPMX19_05453 -0.9 -2.5 hypothetical protein compare
MPMX19_03654 -0.9 -2.0 Fructokinase compare
MPMX19_04701 -0.9 -1.6 Transcriptional regulatory protein FixJ compare
MPMX19_00504 -0.9 -2.9 ATP-dependent Clp protease adapter protein ClpS compare
MPMX19_00061 -0.8 -2.1 L-lysine 2,3-aminomutase compare
MPMX19_06577 -0.8 -5.9 hypothetical protein compare
MPMX19_04118 -0.8 -2.1 Sensor histidine kinase RcsC compare
MPMX19_06014 -0.8 -4.1 Histidinol-phosphate aminotransferase compare
MPMX19_06102 -0.8 -2.3 Membrane-bound lytic murein transglycosylase C compare
MPMX19_05714 -0.8 -4.1 hypothetical protein compare
MPMX19_04948 -0.8 -1.3 HTH-type transcriptional regulator GltR compare
MPMX19_06914 -0.8 -1.6 Acyl-CoA dehydrogenase FadE27 compare
MPMX19_00543 -0.8 -2.1 Molybdenum cofactor guanylyltransferase compare
MPMX19_06545 -0.8 -6.5 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
MPMX19_04199 -0.8 -4.1 Pseudaminic acid synthase compare
MPMX19_02405 -0.8 -1.9 hypothetical protein compare
MPMX19_05482 -0.8 -3.5 hypothetical protein compare
MPMX19_03035 -0.8 -2.3 Protein YceI compare
MPMX19_04615 -0.8 -1.7 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06544 -0.8 -5.9 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
MPMX19_02852 -0.8 -3.0 hypothetical protein compare
MPMX19_00118 -0.8 -2.2 putative parvulin-type peptidyl-prolyl cis-trans isomerase compare
MPMX19_01777 -0.8 -1.9 2-aminoadipate transaminase compare
MPMX19_03452 -0.7 -2.4 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_01627 -0.7 -2.6 hypothetical protein compare
MPMX19_05380 -0.7 -2.1 hypothetical protein compare
MPMX19_02700 -0.7 -2.1 hypothetical protein compare
MPMX19_05119 -0.7 -5.3 Glucose-6-phosphate 1-dehydrogenase compare
MPMX19_00695 -0.7 -1.5 putative transcriptional regulatory protein compare
MPMX19_06985 -0.7 -1.0 L-malyl-CoA/beta-methylmalyl-CoA lyase compare
MPMX19_02202 -0.7 -1.7 hypothetical protein compare
MPMX19_00794 -0.7 -2.1 Transcriptional activator protein CopR compare
MPMX19_05647 -0.7 -2.4 hypothetical protein compare
MPMX19_06090 -0.7 -1.5 Pyruvate dehydrogenase complex repressor compare
MPMX19_04669 -0.7 -1.8 Glucose 1-dehydrogenase compare
MPMX19_04347 -0.7 -3.0 ATP-dependent Clp protease proteolytic subunit compare
MPMX19_04779 -0.7 -1.7 hypothetical protein compare
MPMX19_06028 -0.7 -2.3 hypothetical protein compare
MPMX19_03788 -0.7 -2.4 hypothetical protein compare
MPMX19_03915 -0.7 -2.0 hypothetical protein compare
MPMX19_03765 -0.7 -2.5 hypothetical protein compare
MPMX19_05798 -0.7 -1.3 HTH-type transcriptional repressor NanR compare
MPMX19_04449 -0.7 -1.1 Inosine-5'-monophosphate dehydrogenase compare
MPMX19_06581 -0.7 -4.3 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 compare
MPMX19_01400 -0.7 -1.6 hypothetical protein compare
MPMX19_02392 -0.7 -5.7 Aspartate/prephenate aminotransferase compare
MPMX19_01197 -0.7 -2.9 ECF RNA polymerase sigma factor EcfG compare
MPMX19_04687 -0.7 -1.3 Atrazine chlorohydrolase compare
MPMX19_03494 -0.7 -2.0 Regulatory protein AtoC compare
MPMX19_04622 -0.7 -4.2 hypothetical protein compare
MPMX19_04952 -0.7 -1.6 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_01494 -0.7 -3.6 Flagellar P-ring protein compare
MPMX19_01565 -0.7 -1.6 hypothetical protein compare
MPMX19_03019 -0.7 -1.6 hypothetical protein compare
MPMX19_06180 -0.7 -1.5 Sensor histidine kinase RegB compare
MPMX19_04951 -0.7 -4.0 hypothetical protein compare
MPMX19_03976 -0.7 -2.2 hypothetical protein compare
MPMX19_00191 -0.7 -1.5 hypothetical protein compare
MPMX19_03535 -0.7 -2.8 hypothetical protein compare
MPMX19_00864 -0.7 -2.2 Flagellar hook-basal body complex protein FliE compare
MPMX19_02579 -0.7 -1.4 hypothetical protein compare
MPMX19_03608 -0.7 -2.5 N-acetylmuramic acid 6-phosphate etherase compare
MPMX19_05100 -0.7 -1.3 hypothetical protein compare
MPMX19_03936 -0.7 -2.9 Acetyl-CoA acetyltransferase compare
MPMX19_02171 -0.6 -3.1 putative ABC transporter ATP-binding protein YejF compare
MPMX19_04391 -0.6 -3.6 Homoserine O-acetyltransferase compare
MPMX19_02736 -0.6 -3.8 Tryptophan synthase beta chain compare
MPMX19_05498 -0.6 -1.8 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_01358 -0.6 -2.3 Electron transfer flavoprotein subunit alpha compare
MPMX19_01401 -0.6 -1.3 Ubiquinone biosynthesis accessory factor UbiK compare
MPMX19_01703 -0.6 -1.1 hypothetical protein compare
MPMX19_01585 -0.6 -1.6 Zinc uptake regulation protein compare
MPMX19_01149 -0.6 -3.1 Polyphosphate kinase compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum across organisms