Experiment set1S52 for Azospirillum sp. SherDot2

Compare to:

NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_05193 +1.1 2.1 Taurine-binding periplasmic protein compare
MPMX19_00208 +1.1 2.8 hypothetical protein compare
MPMX19_03262 +0.9 2.3 putative HTH-type transcriptional repressor ExuR compare
MPMX19_03631 +0.9 2.2 hypothetical protein compare
MPMX19_04985 +0.8 1.4 HTH-type transcriptional regulator DmlR compare
MPMX19_03707 +0.8 3.0 L-cystine import ATP-binding protein TcyC compare
MPMX19_01964 +0.8 1.8 hypothetical protein compare
MPMX19_03069 +0.8 1.6 hypothetical protein compare
MPMX19_02937 +0.8 1.5 hypothetical protein compare
MPMX19_04284 +0.7 2.5 hypothetical protein compare
MPMX19_04726 +0.7 2.0 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_03195 +0.7 1.2 hypothetical protein compare
MPMX19_00414 +0.7 1.6 Pyruvate dehydrogenase complex repressor compare
MPMX19_06467 +0.7 3.2 hypothetical protein compare
MPMX19_02514 +0.7 1.4 hypothetical protein compare
MPMX19_03095 +0.7 1.5 hypothetical protein compare
MPMX19_01217 +0.7 2.2 Ribosomal RNA small subunit methyltransferase C compare
MPMX19_05176 +0.7 1.3 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase compare
MPMX19_06353 +0.6 0.9 hypothetical protein compare
MPMX19_03916 +0.6 1.7 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
MPMX19_04551 +0.6 1.3 HTH-type transcriptional repressor RspR compare
MPMX19_03039 +0.6 1.7 Cyclic AMP receptor protein compare
MPMX19_05997 +0.6 1.6 hypothetical protein compare
MPMX19_05623 +0.6 3.0 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_05016 +0.6 1.2 Sensor histidine kinase RcsC compare
MPMX19_06738 +0.6 3.0 Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha compare
MPMX19_06223 +0.6 2.3 HTH-type transcriptional regulator GbpR compare
MPMX19_06804 +0.6 1.5 hypothetical protein compare
MPMX19_06853 +0.6 2.2 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_05034 +0.6 1.7 ATP synthase subunit c compare
MPMX19_04638 +0.6 1.7 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_02803 +0.6 1.4 putative FAD-linked oxidoreductase compare
MPMX19_02063 +0.6 2.4 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_06272 +0.6 1.0 hypothetical protein compare
MPMX19_02034 +0.6 2.4 Peptidoglycan-associated lipoprotein compare
MPMX19_02092 +0.6 2.1 hypothetical protein compare
MPMX19_05152 +0.6 1.9 Phosphonoacetaldehyde hydrolase compare
MPMX19_05189 +0.6 2.1 hypothetical protein compare
MPMX19_00212 +0.6 4.5 Nitrogen fixation regulation protein FixK compare
MPMX19_05779 +0.6 1.9 Beta-ketoadipyl-CoA thiolase compare
MPMX19_02911 +0.6 2.2 hypothetical protein compare
MPMX19_02816 +0.6 1.5 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_02804 +0.6 1.5 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial compare
MPMX19_06197 +0.5 1.1 hypothetical protein compare
MPMX19_04694 +0.5 1.2 Na(+)/H(+) antiporter subunit E1 compare
MPMX19_06519 +0.5 1.2 HTH-type transcriptional repressor NagR compare
MPMX19_04986 +0.5 2.1 hypothetical protein compare
MPMX19_06193 +0.5 1.2 Flagellar hook-basal body complex protein FliE compare
MPMX19_00822 +0.5 3.0 Divalent metal cation transporter MntH compare
MPMX19_06044 +0.5 1.0 hypothetical protein compare
MPMX19_04478 +0.5 3.2 hypothetical protein compare
MPMX19_06843 +0.5 2.2 hypothetical protein compare
MPMX19_02085 +0.5 1.7 hypothetical protein compare
MPMX19_01811 +0.5 1.7 hypothetical protein compare
MPMX19_05295 +0.5 1.0 hypothetical protein compare
MPMX19_02909 +0.5 2.3 Cytochrome c oxidase subunit 3 compare
MPMX19_06989 +0.5 1.3 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_02031 +0.5 1.1 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ compare
MPMX19_04085 +0.5 1.3 hypothetical protein compare
MPMX19_02659 +0.5 2.8 Undecaprenyl-diphosphatase compare
MPMX19_06460 +0.5 1.4 DNA-invertase hin compare
MPMX19_06979 +0.5 0.9 hypothetical protein compare
MPMX19_03716 +0.5 2.3 hypothetical protein compare
MPMX19_00044 +0.5 1.8 hypothetical protein compare
MPMX19_00669 +0.5 2.9 hypothetical protein compare
MPMX19_00923 +0.5 1.2 hypothetical protein compare
MPMX19_03715 +0.5 1.7 Response regulator ArlR compare
MPMX19_01755 +0.5 1.6 hypothetical protein compare
MPMX19_06961 +0.5 2.3 Acetyl-CoA:oxalate CoA-transferase compare
MPMX19_04025 +0.5 2.3 hypothetical protein compare
MPMX19_05548 +0.5 2.0 D-methionine transport system permease protein MetI compare
MPMX19_02105 +0.5 1.4 hypothetical protein compare
MPMX19_06326 +0.5 1.4 hypothetical protein compare
MPMX19_03823 +0.5 1.2 hypothetical protein compare
MPMX19_01235 +0.5 1.2 hypothetical protein compare
MPMX19_06490 +0.5 1.1 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_03728 +0.5 1.2 hypothetical protein compare
MPMX19_00334 +0.5 1.0 hypothetical protein compare
MPMX19_04144 +0.5 2.3 putative manganese efflux pump MntP compare
MPMX19_05534 +0.5 1.1 DNA gyrase inhibitor YacG compare
MPMX19_04214 +0.5 1.8 hypothetical protein compare
MPMX19_05005 +0.5 2.3 hypothetical protein compare
MPMX19_02279 +0.5 1.5 hypothetical protein compare
MPMX19_01790 +0.5 2.0 Urease subunit gamma 1 compare
MPMX19_06482 +0.5 2.4 3-mercaptopropionate dioxygenase compare
MPMX19_04996 +0.5 1.5 hypothetical protein compare
MPMX19_06886 +0.5 1.9 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_02115 +0.5 1.9 hypothetical protein compare
MPMX19_05906 +0.5 1.2 hypothetical protein compare
MPMX19_03710 +0.4 1.5 Glycine cleavage system transcriptional activator compare
MPMX19_02297 +0.4 2.0 hypothetical protein compare
MPMX19_03026 +0.4 1.6 Fructose import ATP-binding protein FrcA compare
MPMX19_00430 +0.4 2.4 hypothetical protein compare
MPMX19_05342 +0.4 1.9 hypothetical protein compare
MPMX19_05834 +0.4 1.3 Hydrogen peroxide-inducible genes activator compare
MPMX19_03959 +0.4 0.8 hypothetical protein compare
MPMX19_04693 +0.4 1.9 hypothetical protein compare
MPMX19_05181 +0.4 1.2 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_03569 +0.4 2.0 hypothetical protein compare
MPMX19_02287 +0.4 2.7 hypothetical protein compare
MPMX19_05553 +0.4 1.5 hypothetical protein compare
MPMX19_01577 +0.4 1.7 hypothetical protein compare
MPMX19_05598 +0.4 2.3 hypothetical protein compare
MPMX19_06313 +0.4 1.7 hypothetical protein compare
MPMX19_06483 +0.4 2.7 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_05307 +0.4 2.5 hypothetical protein compare
MPMX19_05190 +0.4 1.9 putative malonic semialdehyde reductase RutE compare
MPMX19_00036 +0.4 1.8 hypothetical protein compare
MPMX19_03073 +0.4 1.5 hypothetical protein compare
MPMX19_02580 +0.4 1.1 Acetyltransferase compare
MPMX19_01479 +0.4 2.3 hypothetical protein compare
MPMX19_00764 +0.4 1.0 ECF RNA polymerase sigma factor EcfG compare
MPMX19_04058 +0.4 1.1 Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA compare
MPMX19_01120 +0.4 2.0 Fructose-1, 6-bisphosphatase/inositol-1-monophosphatase compare
MPMX19_02611 +0.4 1.9 hypothetical protein compare
MPMX19_00320 +0.4 1.2 hypothetical protein compare
MPMX19_05157 +0.4 1.8 hypothetical protein compare
MPMX19_06492 +0.4 1.9 IS5 family transposase ISAzs10 compare
MPMX19_02679 +0.4 1.1 hypothetical protein compare
MPMX19_06121 +0.4 1.8 hypothetical protein compare
MPMX19_02251 +0.4 1.1 hypothetical protein compare
MPMX19_02310 +0.4 1.3 hypothetical protein compare
MPMX19_04240 +0.4 1.3 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_00872 +0.4 1.1 hypothetical protein compare
MPMX19_06601 +0.4 1.4 hypothetical protein compare
MPMX19_03975 +0.4 1.6 Putative thiosulfate sulfurtransferase compare
MPMX19_03088 +0.4 2.3 putative RNA polymerase sigma factor FecI compare
MPMX19_00025 +0.4 0.8 hypothetical protein compare
MPMX19_01255 +0.4 1.6 Sulfur carrier protein TusA compare
MPMX19_06475 +0.4 1.9 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_04657 +0.4 2.6 2,3-dimethylmalate lyase compare
MPMX19_03474 +0.4 1.8 hypothetical protein compare
MPMX19_02912 +0.4 0.8 hypothetical protein compare
MPMX19_03597 +0.4 2.1 C4-dicarboxylate transport transcriptional regulatory protein DctD compare
MPMX19_03011 +0.4 1.3 hypothetical protein compare
MPMX19_06260 +0.4 1.5 hypothetical protein compare
MPMX19_01708 +0.4 1.2 hypothetical protein compare
MPMX19_04963 +0.4 0.8 Cysteine desulfurase IscS compare
MPMX19_05036 +0.4 1.8 hypothetical protein compare
MPMX19_04670 +0.4 1.4 hypothetical protein compare
MPMX19_00244 +0.4 1.6 hypothetical protein compare
MPMX19_02811 +0.4 1.6 Long-chain-alcohol dehydrogenase 1 compare
MPMX19_02875 +0.4 1.2 hypothetical protein compare
MPMX19_00295 +0.4 1.8 Transcriptional regulatory protein QseB compare
MPMX19_02660 +0.4 1.5 Inner membrane protein YbjJ compare
MPMX19_06263 +0.4 0.9 hypothetical protein compare
MPMX19_06509 +0.4 1.3 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_04211 +0.4 1.6 hypothetical protein compare
MPMX19_06496 +0.4 1.8 FAD-dependent urate hydroxylase compare
MPMX19_04051 +0.4 1.8 Alcohol dehydrogenase compare
MPMX19_03112 +0.4 2.0 Ribonuclease BN compare
MPMX19_05298 +0.4 1.7 Periplasmic [NiFeSe] hydrogenase large subunit compare
MPMX19_04540 +0.4 1.9 hypothetical protein compare
MPMX19_03629 +0.4 1.8 hypothetical protein compare
MPMX19_04161 +0.4 1.1 hypothetical protein compare
MPMX19_05022 +0.4 1.8 hypothetical protein compare
MPMX19_02761 +0.4 2.1 hypothetical protein compare
MPMX19_05733 +0.4 0.7 Biopolymer transport protein ExbD compare
MPMX19_06216 +0.4 1.4 Inner membrane ABC transporter permease protein YtfT compare
MPMX19_00484 +0.4 2.9 sn-glycerol-3-phosphate transport system permease protein UgpA compare
MPMX19_00088 +0.4 1.8 HTH-type transcriptional regulator HdfR compare
MPMX19_01757 +0.4 1.7 Ferredoxin--NADP reductase compare
MPMX19_00841 +0.4 0.8 Holo-[acyl-carrier-protein] synthase compare
MPMX19_04345 +0.4 1.6 hypothetical protein compare
MPMX19_02313 +0.4 2.2 Oxygen-independent coproporphyrinogen III oxidase compare
MPMX19_06944 +0.4 2.0 Fatty acid oxidation complex subunit alpha compare
MPMX19_06924 +0.4 1.4 hypothetical protein compare
MPMX19_06884 +0.4 2.1 hypothetical protein compare
MPMX19_05795 +0.4 2.5 2-dehydro-3-deoxygluconokinase compare
MPMX19_02109 +0.4 1.4 hypothetical protein compare
MPMX19_03038 +0.4 1.4 hypothetical protein compare
MPMX19_02802 +0.4 1.8 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_01864 +0.4 0.7 Regulatory protein AtoC compare
MPMX19_06897 +0.3 1.3 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_05220 +0.3 1.1 hypothetical protein compare
MPMX19_03340 +0.3 0.9 hypothetical protein compare
MPMX19_03396 +0.3 1.0 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_05300 +0.3 1.5 Signal transduction histidine-protein kinase AtoS compare
MPMX19_05581 +0.3 0.8 hypothetical protein compare
MPMX19_03067 +0.3 1.5 hypothetical protein compare
MPMX19_00978 +0.3 1.1 hypothetical protein compare
MPMX19_01503 +0.3 1.1 hypothetical protein compare
MPMX19_06857 +0.3 1.4 Monomeric sarcosine oxidase compare
MPMX19_06355 +0.3 1.3 hypothetical protein compare
MPMX19_01661 +0.3 2.8 Acetoin catabolism regulatory protein compare
MPMX19_03454 +0.3 1.5 Nitrate import ATP-binding protein NrtC compare
MPMX19_06395 +0.3 1.3 Inner membrane protein YqaA compare
MPMX19_01940 +0.3 1.8 Ribosomal RNA large subunit methyltransferase H compare
MPMX19_04856 +0.3 1.4 Phosphoglycolate phosphatase compare
MPMX19_06383 +0.3 1.1 hypothetical protein compare
MPMX19_05685 +0.3 2.4 Protein-glutamate methylesterase/protein-glutamine glutaminase 2 compare
MPMX19_06501 +0.3 2.6 hypothetical protein compare
MPMX19_05011 +0.3 1.4 tRNA (cytidine(34)-2'-O)-methyltransferase compare
MPMX19_03276 +0.3 1.3 hypothetical protein compare
MPMX19_03149 +0.3 1.9 hypothetical protein compare
MPMX19_04517 +0.3 2.3 Glycine cleavage system transcriptional activator compare
MPMX19_00875 +0.3 1.1 hypothetical protein compare
MPMX19_06773 +0.3 1.0 2-(R)-hydroxypropyl-CoM dehydrogenase compare
MPMX19_03221 +0.3 1.8 Adaptive-response sensory-kinase SasA compare
MPMX19_05604 +0.3 1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in mixed community experiments

For mixed community Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum across organisms