Experiment set1S517 for Alteromonas macleodii MIT1002

Compare to:

Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 5

200 most important genes:

  gene name fitness t score description  
MIT1002_03785 -5.1 -3.5 Modulator of FtsH protease HflC compare
MIT1002_03690 -4.8 -3.3 DnaK suppressor protein compare
MIT1002_03786 -4.7 -3.2 Modulator of FtsH protease HflK compare
MIT1002_00471 -4.6 -3.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
MIT1002_00504 -4.6 -3.2 Acetolactate synthase isozyme 3 small subunit compare
MIT1002_02429 -4.5 -3.1 Glucose-resistance amylase regulator compare
MIT1002_01027 -4.5 -3.1 Phosphoribosylformylglycinamidine synthase compare
MIT1002_00948 -4.5 -3.1 3-isopropylmalate dehydrogenase compare
MIT1002_02524 -4.5 -3.1 Amidophosphoribosyltransferase compare
MIT1002_02348 -4.5 -5.3 hypothetical protein compare
MIT1002_04045 -4.4 -3.1 Ketol-acid reductoisomerase compare
MIT1002_03908 -4.4 -5.9 NAD(P) transhydrogenase subunit alpha compare
MIT1002_03909 -4.4 -4.3 NAD(P) transhydrogenase subunit alpha part 1 compare
MIT1002_00949 -4.4 -3.0 2-isopropylmalate synthase compare
MIT1002_02833 -4.4 -3.0 Malate synthase G compare
MIT1002_01763 -4.3 -2.2 Putative pterin-4-alpha-carbinolamine dehydratase compare
MIT1002_01263 -4.3 -3.0 7-cyano-7-deazaguanine synthase compare
MIT1002_00189 -4.3 -3.0 Galactokinase compare
MIT1002_00469 -4.3 -3.0 Ornithine carbamoyltransferase compare
MIT1002_03516 -4.3 -3.0 Acetyl-coenzyme A synthetase compare
MIT1002_02636 -4.3 -3.0 Imidazole glycerol phosphate synthase subunit HisH compare
MIT1002_00946 -4.3 -3.0 3-isopropylmalate dehydratase small subunit 1 compare
MIT1002_00933 -4.3 -3.0 Inner membrane protein YohK compare
MIT1002_01827 -4.2 -4.1 High frequency lysogenization protein HflD compare
MIT1002_03139 -4.2 -2.9 Glutamate synthase [NADPH] large chain precursor compare
MIT1002_01112 -4.2 -2.9 Homoserine O-succinyltransferase compare
MIT1002_02220 -4.2 -2.9 Phosphoribosylglycinamide formyltransferase compare
MIT1002_00826 -4.2 -2.5 Ribosome hibernation promoting factor compare
MIT1002_03179 -4.1 -2.9 Cystathionine beta-lyase PatB compare
MIT1002_02219 -4.1 -2.9 Phosphoribosylformylglycinamidine cyclo-ligase compare
MIT1002_00377 -4.1 -2.9 Branched-chain-amino-acid aminotransferase 2 compare
MIT1002_03907 -4.1 -4.0 NAD(P) transhydrogenase subunit beta compare
MIT1002_04040 -4.1 -2.8 L-threonine dehydratase biosynthetic IlvA compare
MIT1002_03961 -4.1 -2.8 Phosphoribosylamine--glycine ligase compare
MIT1002_00522 -4.1 -2.8 N5-carboxyaminoimidazole ribonucleotide synthase compare
MIT1002_01122 -4.1 -6.2 Bicarbonate transporter BicA compare
MIT1002_02831 -4.0 -2.8 Isocitrate lyase compare
MIT1002_03086 -3.9 -2.7 Aspartokinase I/homoserine dehydrogenase I compare
MIT1002_01119 -3.9 -4.7 HTH-type transcriptional regulator GltC compare
MIT1002_00467 -3.9 -2.7 Argininosuccinate lyase compare
MIT1002_00947 -3.9 -2.7 3-isopropylmalate dehydratase large subunit compare
MIT1002_01266 -3.9 -2.7 Asparagine synthetase B [glutamine-hydrolyzing] compare
MIT1002_02639 -3.9 -2.7 Phosphoribosyl-ATP pyrophosphatase compare
MIT1002_02638 -3.9 -2.7 Imidazole glycerol phosphate synthase subunit HisF compare
MIT1002_02266 -3.8 -2.7 Methionine gamma-lyase compare
MIT1002_04044 -3.8 -2.6 HTH-type transcriptional regulator GltC compare
MIT1002_00468 -3.8 -2.6 Argininosuccinate synthase compare
MIT1002_00068 -3.8 -2.6 Chorismate--pyruvate lyase compare
MIT1002_00466 -3.7 -2.6 Amino-acid acetyltransferase compare
MIT1002_00485 -3.7 -2.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
MIT1002_02634 -3.7 -2.6 Histidinol-phosphate aminotransferase compare
MIT1002_02993 -3.7 -2.6 D-3-phosphoglycerate dehydrogenase compare
MIT1002_03539 -3.7 -2.0 Bifunctional protein BirA compare
MIT1002_02702 -3.7 -2.6 Serine hydroxymethyltransferase compare
MIT1002_00809 -3.7 -2.5 Sensor protein QseC compare
MIT1002_02633 -3.7 -2.5 Histidinol dehydrogenase compare
MIT1002_00138 -3.7 -3.6 Histone deacetylase-like amidohydrolase compare
MIT1002_02811 -3.7 -2.5 preprotein translocase subunit SecD compare
MIT1002_03140 -3.7 -2.5 Glutamate synthase [NADPH] small chain compare
MIT1002_03698 -3.6 -2.5 tRNA (guanine-N(7)-)-methyltransferase compare
MIT1002_00188 -3.6 -3.5 Galactose-1-phosphate uridylyltransferase compare
MIT1002_02635 -3.6 -2.5 Histidine biosynthesis bifunctional protein HisB compare
MIT1002_04041 -3.6 -2.5 Dihydroxy-acid dehydratase compare
MIT1002_01420 -3.6 -2.5 Virulence sensor histidine kinase PhoQ compare
MIT1002_02810 -3.6 -2.5 preprotein translocase subunit SecF compare
MIT1002_01979 -3.6 -2.5 Carnitinyl-CoA dehydratase compare
MIT1002_02349 -3.6 -6.4 2-hydroxypropyl-CoM lyase compare
MIT1002_01466 -3.5 -2.5 Carbamoyl-phosphate synthase small chain compare
MIT1002_02008 -3.5 -6.8 Para-aminobenzoate synthase component 1 compare
MIT1002_03885 -3.5 -2.4 NADH dehydrogenase compare
MIT1002_02708 -3.5 -2.4 Phosphoserine phosphatase compare
MIT1002_03096 -3.5 -2.4 Isocitrate dehydrogenase kinase/phosphatase compare
MIT1002_01467 -3.5 -2.4 Carbamoyl-phosphate synthase large chain compare
MIT1002_02231 -3.5 -4.1 Phosphoglycolate phosphatase compare
MIT1002_00503 -3.4 -2.4 Acetolactate synthase isozyme 3 large subunit compare
MIT1002_00160 -3.4 -2.4 Diaminopimelate decarboxylase compare
MIT1002_03084 -3.4 -2.3 Threonine synthase compare
MIT1002_02570 -3.4 -5.2 hypothetical protein compare
MIT1002_00932 -3.4 -1.8 holin-like protein compare
MIT1002_00843 -3.3 -2.3 hypothetical protein compare
MIT1002_03321 -3.3 -6.0 Aldehyde dehydrogenase B compare
MIT1002_03828 -3.3 -7.7 Taurine catabolism dioxygenase TauD, TfdA family compare
MIT1002_03130 -3.3 -2.3 2-methylcitrate synthase compare
MIT1002_01984 -3.3 -2.3 queuosine biosynthesis protein QueD compare
MIT1002_01885 -3.3 -2.3 Gamma-glutamyl phosphate reductase compare
MIT1002_00470 -3.3 -7.8 Acetylglutamate kinase compare
MIT1002_03062 -3.3 -2.2 Pyrroline-5-carboxylate reductase compare
MIT1002_01736 -3.3 -4.5 Aminodeoxychorismate lyase compare
MIT1002_00099 -3.2 -4.5 putative protoheme IX biogenesis protein compare
MIT1002_01264 -3.2 -2.2 7-carboxy-7-deazaguanine synthase compare
MIT1002_02394 -3.2 -2.2 Glyceraldehyde-3-phosphate dehydrogenase compare
MIT1002_03331 -3.2 -3.1 D-lactate dehydrogenase compare
MIT1002_01428 -3.2 -2.2 Anthranilate synthase component II compare
MIT1002_02637 -3.2 -2.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MIT1002_03322 -3.2 -4.9 Transcriptional activator protein ExaE compare
MIT1002_01816 -3.2 -16.6 Phosphoenolpyruvate synthase compare
MIT1002_01429 -3.2 -2.2 Anthranilate synthase component II compare
MIT1002_00107 -3.1 -1.8 DNA-directed RNA polymerase subunit omega compare
MIT1002_00437 -3.1 -2.2 Succinylornithine transaminase/acetylornithine aminotransferase compare
MIT1002_03015 -3.1 -5.2 aspartoacylase compare
MIT1002_02306 -3.1 -3.6 Glutamate-pyruvate aminotransferase AlaA compare
MIT1002_01265 -3.1 -8.4 hypothetical protein compare
MIT1002_03085 -3.0 -2.1 Homoserine kinase compare
MIT1002_00997 -3.0 -0.9 hypothetical protein compare
MIT1002_02682 -3.0 -2.1 Sigma-W factor compare
MIT1002_02287 -3.0 -5.4 Electron transfer flavoprotein small subunit compare
MIT1002_00888 -3.0 -2.9 Organic hydroperoxide resistance transcriptional regulator compare
MIT1002_02020 -3.0 -5.7 Purine catabolism protein PucG compare
MIT1002_04134 -3.0 -2.0 Sporulation initiation inhibitor protein soj compare
MIT1002_03371 -2.9 -3.4 HTH-type transcriptional repressor FabR compare
MIT1002_00351 -2.9 -7.7 Degradation activator compare
MIT1002_03855 -2.9 -1.3 hypothetical protein compare
MIT1002_03317 -2.9 -2.0 Transcriptional regulatory protein DevR (DosR) compare
MIT1002_02404 -2.9 -2.8 Glucokinase compare
MIT1002_02972 -2.9 -2.8 Glycine cleavage system H protein compare
MIT1002_03058 -2.9 -1.3 hypothetical protein compare
MIT1002_03200 -2.9 -2.0 RDD family protein compare
MIT1002_02832 -2.9 -2.0 Nodulation protein D 2 compare
MIT1002_00988 -2.9 -2.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
MIT1002_00113 -2.8 -4.2 Putative peroxiredoxin compare
MIT1002_01777 -2.8 -1.9 chromosome segregation protein SMC compare
MIT1002_01981 -2.8 -1.9 Inner membrane protein YejM compare
MIT1002_02441 -2.8 -1.9 Helix-turn-helix domain protein compare
MIT1002_01295 -2.8 -1.9 Inner membrane protein YpjD compare
MIT1002_03323 -2.8 -5.9 Sensor histidine kinase LiaS compare
MIT1002_02577 -2.8 -2.4 poly(hydroxyalkanoate) granule-associated protein compare
MIT1002_02400 -2.7 -6.1 4-alpha-glucanotransferase compare
MIT1002_01001 -2.7 -3.3 PII uridylyl-transferase compare
MIT1002_00486 -2.7 -0.9 Protein-export protein SecB compare
MIT1002_01544 -2.7 -1.9 D-alanyl-D-alanine carboxypeptidase compare
MIT1002_00648 -2.7 -8.3 Phosphoenolpyruvate-protein phosphotransferase compare
MIT1002_01430 -2.7 -1.9 Anthranilate synthase component 1 compare
MIT1002_03186 -2.7 -1.8 Nitrogen regulation protein NR(I) compare
MIT1002_01316 -2.6 -1.8 P-protein compare
MIT1002_02882 -2.6 -1.1 hypothetical protein compare
MIT1002_03830 -2.6 -5.8 HTH-type transcriptional repressor YvoA compare
MIT1002_01422 -2.6 -3.0 hypothetical protein compare
MIT1002_02971 -2.6 -10.4 Glycine dehydrogenase [decarboxylating] compare
MIT1002_03993 -2.6 -7.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MIT1002_03300 -2.6 -7.7 HTH-type transcriptional regulator UlaR compare
MIT1002_02288 -2.5 -19.2 Electron transfer flavoprotein-ubiquinone oxidoreductase compare
MIT1002_01129 -2.5 -1.7 Carbon storage regulator compare
MIT1002_01131 -2.5 -0.8 tRNA-Arg compare
MIT1002_02126 -2.5 -2.0 Bacterioferritin compare
MIT1002_00647 -2.5 -2.9 RNA pyrophosphohydrolase compare
MIT1002_01352 -2.5 -9.1 Aspartate-semialdehyde dehydrogenase compare
MIT1002_03185 -2.5 -6.2 Nitrogen regulation protein NR(II) compare
MIT1002_00100 -2.5 -6.7 Putative uroporphyrinogen-III C-methyltransferase compare
MIT1002_02206 -2.5 -2.7 Outer membrane protein assembly factor BamC precursor compare
MIT1002_02632 -2.5 -1.7 ATP phosphoribosyltransferase compare
MIT1002_00076 -2.4 -1.7 transcriptional regulator, y4mF family compare
MIT1002_02286 -2.4 -5.6 Electron transfer flavoprotein large subunit compare
MIT1002_00439 -2.4 -7.5 Para-aminobenzoate synthase glutamine amidotransferase component II compare
MIT1002_02571 -2.4 -4.8 Diacylglycerol O-acyltransferase compare
MIT1002_02973 -2.4 -5.5 Aminomethyltransferase compare
MIT1002_01143 -2.4 -3.6 Phage shock protein A compare
MIT1002_03050 -2.4 -7.4 3-oxoacyl-[acyl-carrier-protein] synthase 3 compare
MIT1002_04027 -2.4 -9.2 Protoheme IX farnesyltransferase compare
MIT1002_02991 -2.3 -1.6 putative 5-formyltetrahydrofolate cyclo-ligase compare
MIT1002_03965 -2.3 -10.3 Phosphoribulokinase, plasmid compare
MIT1002_03616 -2.3 -1.6 NAD(P)H-flavin reductase compare
MIT1002_02757 -2.3 -7.8 Lon protease compare
MIT1002_03082 -2.3 -2.1 hypothetical protein compare
MIT1002_01157 -2.3 -2.7 Outer membrane cobalamin translocator compare
MIT1002_01340 -2.3 -5.2 tol-pal system protein YbgF compare
MIT1002_02573 -2.2 -1.6 hypothetical protein compare
MIT1002_00066 -2.2 -2.7 Rhomboid protease GlpG compare
MIT1002_00971 -2.2 -2.1 hypothetical protein compare
MIT1002_01235 -2.2 -1.5 Monothiol glutaredoxin compare
MIT1002_02586 -2.2 -1.8 YcgL domain protein compare
MIT1002_03034 -2.2 -3.3 cell division protein MraZ compare
MIT1002_00423 -2.2 -1.5 Aspartate carbamoyltransferase catalytic chain compare
MIT1002_03116 -2.1 -3.3 Spore coat protein SA compare
MIT1002_00521 -2.1 -1.5 N5-carboxyaminoimidazole ribonucleotide mutase compare
MIT1002_00398 -2.1 -1.1 hypothetical protein compare
MIT1002_02718 -2.1 -2.8 Sigma-E factor negative regulatory protein compare
MIT1002_02892 -2.1 -2.9 HTH-type transcriptional repressor CytR compare
MIT1002_02760 -2.1 -1.4 ATP-dependent Clp protease proteolytic subunit precursor compare
MIT1002_01121 -2.1 -2.5 Carbonic anhydrase 1 compare
MIT1002_00876 -2.1 -2.5 Phosphate import ATP-binding protein PstB 3 compare
MIT1002_02390 -2.1 -3.0 hypothetical protein compare
MIT1002_04092 -2.1 -1.4 putative type I restriction enzymeP M protein compare
MIT1002_03329 -2.1 -7.6 D-malate degradation protein R compare
MIT1002_01457 -2.1 -0.9 Heat shock protein 70 compare
MIT1002_01840 -2.1 -7.2 Protease 4 compare
MIT1002_01427 -2.1 -1.4 Tryptophan biosynthesis protein TrpCF compare
MIT1002_02576 -2.0 -6.7 hypothetical protein compare
MIT1002_00070 -2.0 -0.9 Membrane fusogenic activity compare
MIT1002_02572 -2.0 -3.3 HTH-type transcriptional regulator QacR compare
MIT1002_02246 -2.0 -0.9 hypothetical protein compare
MIT1002_03670 -1.9 -6.0 5,10-methylenetetrahydrofolate reductase compare
MIT1002_01035 -1.9 -2.6 anti-sigma28 factor FlgM compare
MIT1002_01361 -1.9 -2.3 Rut operon repressor compare
MIT1002_00827 -1.9 -1.3 RNA polymerase sigma-54 factor 2 compare
MIT1002_04036 -1.9 -1.2 LexA repressor compare
MIT1002_03319 -1.9 -6.2 hypothetical protein compare
MIT1002_00844 -1.9 -2.3 AFG1-like ATPase compare
MIT1002_03127 -1.9 -1.2 hypothetical protein compare
MIT1002_02684 -1.9 -5.5 SnoaL-like domain protein compare
MIT1002_03279 -1.9 -8.9 Quinoprotein ethanol dehydrogenase precursor compare


Specific Phenotypes

None in this experiment

For Alteromonas macleodii MIT1002 in mixed community experiments

For mixed community Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 across organisms