Experiment set1S515 for Alteromonas macleodii MIT1002

Compare to:

Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

200 most important genes:

  gene name fitness t score description  
MIT1002_03785 -7.5 -7.3 Modulator of FtsH protease HflC compare
MIT1002_03690 -7.2 -5.0 DnaK suppressor protein compare
MIT1002_03786 -7.2 -5.0 Modulator of FtsH protease HflK compare
MIT1002_00471 -7.1 -4.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
MIT1002_03908 -7.1 -8.0 NAD(P) transhydrogenase subunit alpha compare
MIT1002_00504 -7.0 -4.7 Acetolactate synthase isozyme 3 small subunit compare
MIT1002_01027 -7.0 -4.8 Phosphoribosylformylglycinamidine synthase compare
MIT1002_00948 -7.0 -4.8 3-isopropylmalate dehydrogenase compare
MIT1002_04045 -7.0 -4.8 Ketol-acid reductoisomerase compare
MIT1002_02524 -6.9 -4.8 Amidophosphoribosyltransferase compare
MIT1002_02833 -6.8 -4.7 Malate synthase G compare
MIT1002_01263 -6.8 -4.6 7-cyano-7-deazaguanine synthase compare
MIT1002_02636 -6.8 -4.7 Imidazole glycerol phosphate synthase subunit HisH compare
MIT1002_01763 -6.8 -2.9 Putative pterin-4-alpha-carbinolamine dehydratase compare
MIT1002_00469 -6.8 -4.7 Ornithine carbamoyltransferase compare
MIT1002_00949 -6.7 -6.6 2-isopropylmalate synthase compare
MIT1002_03516 -6.7 -4.7 Acetyl-coenzyme A synthetase compare
MIT1002_00946 -6.7 -4.7 3-isopropylmalate dehydratase small subunit 1 compare
MIT1002_00933 -6.7 -4.6 Inner membrane protein YohK compare
MIT1002_01112 -6.7 -4.6 Homoserine O-succinyltransferase compare
MIT1002_03139 -6.6 -4.6 Glutamate synthase [NADPH] large chain precursor compare
MIT1002_00826 -6.6 -3.3 Ribosome hibernation promoting factor compare
MIT1002_00377 -6.6 -4.6 Branched-chain-amino-acid aminotransferase 2 compare
MIT1002_03179 -6.6 -4.6 Cystathionine beta-lyase PatB compare
MIT1002_02220 -6.6 -4.6 Phosphoribosylglycinamide formyltransferase compare
MIT1002_04040 -6.6 -4.5 L-threonine dehydratase biosynthetic IlvA compare
MIT1002_02219 -6.6 -4.5 Phosphoribosylformylglycinamidine cyclo-ligase compare
MIT1002_00522 -6.6 -4.5 N5-carboxyaminoimidazole ribonucleotide synthase compare
MIT1002_02831 -6.5 -4.5 Isocitrate lyase compare
MIT1002_00467 -6.4 -4.4 Argininosuccinate lyase compare
MIT1002_03086 -6.4 -4.4 Aspartokinase I/homoserine dehydrogenase I compare
MIT1002_00189 -6.4 -17.0 Galactokinase compare
MIT1002_00947 -6.3 -4.4 3-isopropylmalate dehydratase large subunit compare
MIT1002_01266 -6.3 -4.4 Asparagine synthetase B [glutamine-hydrolyzing] compare
MIT1002_02638 -6.3 -4.4 Imidazole glycerol phosphate synthase subunit HisF compare
MIT1002_02639 -6.3 -4.4 Phosphoribosyl-ATP pyrophosphatase compare
MIT1002_03907 -6.3 -8.6 NAD(P) transhydrogenase subunit beta compare
MIT1002_02429 -6.3 -11.3 Glucose-resistance amylase regulator compare
MIT1002_00468 -6.3 -4.3 Argininosuccinate synthase compare
MIT1002_00188 -6.3 -4.3 Galactose-1-phosphate uridylyltransferase compare
MIT1002_03961 -6.2 -9.6 Phosphoribosylamine--glycine ligase compare
MIT1002_00485 -6.2 -4.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
MIT1002_02993 -6.2 -4.3 D-3-phosphoglycerate dehydrogenase compare
MIT1002_02266 -6.2 -4.3 Methionine gamma-lyase compare
MIT1002_00466 -6.2 -4.3 Amino-acid acetyltransferase compare
MIT1002_02634 -6.2 -4.3 Histidinol-phosphate aminotransferase compare
MIT1002_02633 -6.2 -4.3 Histidinol dehydrogenase compare
MIT1002_04041 -6.1 -4.2 Dihydroxy-acid dehydratase compare
MIT1002_02635 -6.1 -4.2 Histidine biosynthesis bifunctional protein HisB compare
MIT1002_02702 -6.1 -7.3 Serine hydroxymethyltransferase compare
MIT1002_04044 -6.1 -8.4 HTH-type transcriptional regulator GltC compare
MIT1002_03539 -6.1 -2.7 Bifunctional protein BirA compare
MIT1002_03140 -6.1 -4.2 Glutamate synthase [NADPH] small chain compare
MIT1002_02810 -6.1 -4.2 preprotein translocase subunit SecF compare
MIT1002_03698 -6.1 -4.2 tRNA (guanine-N(7)-)-methyltransferase compare
MIT1002_03909 -6.0 -16.6 NAD(P) transhydrogenase subunit alpha part 1 compare
MIT1002_02811 -6.0 -9.2 preprotein translocase subunit SecD compare
MIT1002_02708 -6.0 -4.2 Phosphoserine phosphatase compare
MIT1002_01979 -6.0 -4.1 Carnitinyl-CoA dehydratase compare
MIT1002_01466 -6.0 -4.1 Carbamoyl-phosphate synthase small chain compare
MIT1002_03096 -6.0 -4.1 Isocitrate dehydrogenase kinase/phosphatase compare
MIT1002_00503 -5.9 -4.1 Acetolactate synthase isozyme 3 large subunit compare
MIT1002_00160 -5.9 -4.1 Diaminopimelate decarboxylase compare
MIT1002_01467 -5.9 -4.1 Carbamoyl-phosphate synthase large chain compare
MIT1002_00809 -5.9 -13.7 Sensor protein QseC compare
MIT1002_00843 -5.9 -4.0 hypothetical protein compare
MIT1002_03084 -5.9 -4.0 Threonine synthase compare
MIT1002_00161 -5.8 -3.6 putative small periplasmic lipoprotein compare
MIT1002_00932 -5.8 -2.6 holin-like protein compare
MIT1002_01885 -5.8 -4.0 Gamma-glutamyl phosphate reductase compare
MIT1002_03130 -5.7 -4.0 2-methylcitrate synthase compare
MIT1002_01984 -5.7 -4.0 queuosine biosynthesis protein QueD compare
MIT1002_03062 -5.7 -3.9 Pyrroline-5-carboxylate reductase compare
MIT1002_01264 -5.7 -3.9 7-carboxy-7-deazaguanine synthase compare
MIT1002_02637 -5.7 -3.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MIT1002_02394 -5.7 -3.9 Glyceraldehyde-3-phosphate dehydrogenase compare
MIT1002_01429 -5.6 -3.9 Anthranilate synthase component II compare
MIT1002_01428 -5.6 -3.9 Anthranilate synthase component II compare
MIT1002_00437 -5.6 -3.9 Succinylornithine transaminase/acetylornithine aminotransferase compare
MIT1002_03321 -5.6 -12.0 Aldehyde dehydrogenase B compare
MIT1002_03885 -5.6 -6.7 NADH dehydrogenase compare
MIT1002_02306 -5.6 -5.4 Glutamate-pyruvate aminotransferase AlaA compare
MIT1002_01420 -5.5 -7.6 Virulence sensor histidine kinase PhoQ compare
MIT1002_01736 -5.5 -9.3 Aminodeoxychorismate lyase compare
MIT1002_03085 -5.5 -3.8 Homoserine kinase compare
MIT1002_04134 -5.4 -5.3 Sporulation initiation inhibitor protein soj compare
MIT1002_02832 -5.4 -3.7 Nodulation protein D 2 compare
MIT1002_02404 -5.4 -3.7 Glucokinase compare
MIT1002_00988 -5.4 -3.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
MIT1002_01295 -5.3 -3.6 Inner membrane protein YpjD compare
MIT1002_01981 -5.3 -3.6 Inner membrane protein YejM compare
MIT1002_01316 -5.2 -3.6 P-protein compare
MIT1002_01430 -5.1 -3.5 Anthranilate synthase component 1 compare
MIT1002_01119 -5.0 -14.1 HTH-type transcriptional regulator GltC compare
MIT1002_01129 -5.0 -2.8 Carbon storage regulator compare
MIT1002_01122 -5.0 -17.9 Bicarbonate transporter BicA compare
MIT1002_00076 -4.9 -3.1 transcriptional regulator, y4mF family compare
MIT1002_02632 -4.9 -3.4 ATP phosphoribosyltransferase compare
MIT1002_00138 -4.9 -12.7 Histone deacetylase-like amidohydrolase compare
MIT1002_01544 -4.9 -8.2 D-alanyl-D-alanine carboxypeptidase compare
MIT1002_02349 -4.9 -15.0 2-hydroxypropyl-CoM lyase compare
MIT1002_00470 -4.9 -8.4 Acetylglutamate kinase compare
MIT1002_00068 -4.8 -7.2 Chorismate--pyruvate lyase compare
MIT1002_02991 -4.8 -3.3 putative 5-formyltetrahydrofolate cyclo-ligase compare
MIT1002_02718 -4.8 -3.9 Sigma-E factor negative regulatory protein compare
MIT1002_00100 -4.8 -13.7 Putative uroporphyrinogen-III C-methyltransferase compare
MIT1002_00423 -4.7 -3.2 Aspartate carbamoyltransferase catalytic chain compare
MIT1002_03331 -4.6 -7.8 D-lactate dehydrogenase compare
MIT1002_02760 -4.6 -3.2 ATP-dependent Clp protease proteolytic subunit precursor compare
MIT1002_00521 -4.6 -3.2 N5-carboxyaminoimidazole ribonucleotide mutase compare
MIT1002_04092 -4.6 -3.2 putative type I restriction enzymeP M protein compare
MIT1002_03317 -4.6 -4.2 Transcriptional regulatory protein DevR (DosR) compare
MIT1002_02400 -4.5 -13.1 4-alpha-glucanotransferase compare
MIT1002_00351 -4.5 -11.8 Degradation activator compare
MIT1002_01427 -4.5 -2.8 Tryptophan biosynthesis protein TrpCF compare
MIT1002_03116 -4.5 -7.5 Spore coat protein SA compare
MIT1002_00827 -4.5 -2.7 RNA polymerase sigma-54 factor 2 compare
MIT1002_01001 -4.4 -9.5 PII uridylyl-transferase compare
MIT1002_02573 -4.4 -6.8 hypothetical protein compare
MIT1002_02286 -4.4 -10.2 Electron transfer flavoprotein large subunit compare
MIT1002_02441 -4.4 -5.2 Helix-turn-helix domain protein compare
MIT1002_03323 -4.4 -12.6 Sensor histidine kinase LiaS compare
MIT1002_02759 -4.4 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MIT1002_02184 -4.3 -2.2 Orotidine 5'-phosphate decarboxylase compare
MIT1002_02287 -4.3 -10.7 Electron transfer flavoprotein small subunit compare
MIT1002_02035 -4.3 -1.9 Dihydroorotate dehydrogenase (quinone) compare
MIT1002_01827 -4.3 -4.9 High frequency lysogenization protein HflD compare
MIT1002_00486 -4.2 -1.1 Protein-export protein SecB compare
MIT1002_04135 -4.2 -5.0 ParB/RepB/Spo0J family partition protein compare
MIT1002_02812 -4.2 -2.8 preprotein translocase subunit YajC compare
MIT1002_00074 -4.2 -2.6 tRNA-Arg compare
MIT1002_03481 -4.1 -2.6 hypothetical protein compare
MIT1002_02130 -4.1 -2.1 cbb3-type cytochrome c oxidase subunit II compare
MIT1002_02348 -4.1 -11.1 hypothetical protein compare
MIT1002_01035 -4.1 -4.5 anti-sigma28 factor FlgM compare
MIT1002_00235 -4.0 -2.5 Glycogen synthase compare
MIT1002_00066 -4.0 -8.0 Rhomboid protease GlpG compare
MIT1002_00012 -4.0 -2.8 Cytochrome c4 precursor compare
MIT1002_03488 -4.0 -2.8 Na(+)-translocating NADH-quinone reductase subunit A compare
MIT1002_02128 -4.0 -2.7 hypothetical protein compare
MIT1002_01345 -4.0 -2.1 tRNA-Ser compare
MIT1002_01777 -4.0 -5.8 chromosome segregation protein SMC compare
MIT1002_02973 -4.0 -11.8 Aminomethyltransferase compare
MIT1002_00884 -3.9 -2.2 hypothetical protein compare
MIT1002_02288 -3.9 -29.9 Electron transfer flavoprotein-ubiquinone oxidoreductase compare
MIT1002_01121 -3.9 -7.4 Carbonic anhydrase 1 compare
MIT1002_03185 -3.9 -10.5 Nitrogen regulation protein NR(II) compare
MIT1002_02129 -3.8 -2.7 hypothetical protein compare
MIT1002_02133 -3.8 -2.5 putative integral membrane protein linked to a cation pump compare
MIT1002_00833 -3.8 -7.2 Inner membrane protein YrbG compare
MIT1002_01638 -3.8 -2.6 Integration host factor subunit alpha compare
MIT1002_02136 -3.8 -2.6 hypothetical protein compare
MIT1002_02188 -3.7 -2.6 Integration host factor subunit beta compare
MIT1002_02538 -3.7 -1.9 3-oxoacyl-[acyl-carrier-protein] synthase 1 compare
MIT1002_03978 -3.7 -2.5 General secretion pathway protein F compare
MIT1002_00113 -3.7 -9.7 Putative peroxiredoxin compare
MIT1002_00719 -3.6 -9.0 cytochrome c oxidase accessory protein CcoG compare
MIT1002_00814 -3.6 -2.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
MIT1002_03979 -3.6 -1.6 Pullulanase secretion protein PulG compare
MIT1002_02025 -3.6 -5.4 Tail-specific protease precursor compare
MIT1002_01925 -3.6 -1.6 hypothetical protein compare
MIT1002_02134 -3.5 -2.4 putative copper-importing P-type ATPase A compare
MIT1002_03186 -3.5 -8.5 Nitrogen regulation protein NR(I) compare
MIT1002_01457 -3.5 -1.2 Heat shock protein 70 compare
MIT1002_03484 -3.5 -1.8 Na(+)-translocating NADH-quinone reductase subunit E compare
MIT1002_00099 -3.5 -10.6 putative protoheme IX biogenesis protein compare
MIT1002_03977 -3.5 -2.4 Type II traffic warden ATPase compare
MIT1002_02231 -3.5 -11.4 Phosphoglycolate phosphatase compare
MIT1002_03015 -3.5 -5.5 aspartoacylase compare
MIT1002_03616 -3.5 -6.5 NAD(P)H-flavin reductase compare
MIT1002_00883 -3.5 -3.7 putative transmembrane transcriptional regulator (anti-sigma factor) compare
MIT1002_03828 -3.5 -14.5 Taurine catabolism dioxygenase TauD, TfdA family compare
MIT1002_00115 -3.4 -1.8 Iron(III)-binding periplasmic protein compare
MIT1002_00815 -3.4 -2.4 Cytochrome b/c1 compare
MIT1002_00844 -3.4 -6.2 AFG1-like ATPase compare
MIT1002_03568 -3.4 -7.6 Mannosylfructose-phosphate synthase compare
MIT1002_03483 -3.4 -1.7 Na(+)-translocating NADH-quinone reductase subunit F compare
MIT1002_02246 -3.4 -1.2 hypothetical protein compare
MIT1002_02581 -3.4 -3.3 Disulfide oxidoreductase compare
MIT1002_03805 -3.4 -2.1 hypothetical protein compare
MIT1002_03980 -3.4 -2.3 General secretion pathway protein H compare
MIT1002_03982 -3.3 -2.2 PilD-dependent protein PddD compare
MIT1002_00816 -3.3 -2.3 Cytochrome c1 precursor compare
MIT1002_02972 -3.3 -5.7 Glycine cleavage system H protein compare
MIT1002_03137 -3.3 -4.5 Aerobic respiration control sensor protein ArcB compare
MIT1002_03581 -3.3 -7.4 Mannose-1-phosphate guanylyltransferase 1 compare
MIT1002_04093 -3.3 -1.2 Type I restriction modification DNA specificity domain protein compare
MIT1002_03485 -3.3 -2.1 Na(+)-translocating NADH-quinone reductase subunit D compare
MIT1002_04050 -3.3 -1.2 hypothetical protein compare
MIT1002_03300 -3.3 -12.5 HTH-type transcriptional regulator UlaR compare
MIT1002_02014 -3.3 -11.4 Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex compare
MIT1002_03003 -3.3 -3.9 Pyruvate dehydrogenase E1 component compare
MIT1002_00877 -3.3 -7.9 Repressor protein PhoU compare
MIT1002_01361 -3.3 -5.8 Rut operon repressor compare
MIT1002_02571 -3.3 -9.6 Diacylglycerol O-acyltransferase compare
MIT1002_02807 -3.2 -3.8 Inositol-1-monophosphatase compare
MIT1002_01163 -3.2 -2.0 hypothetical protein compare
MIT1002_03981 -3.2 -1.6 Putative general secretion pathway protein I compare
MIT1002_02572 -3.2 -5.9 HTH-type transcriptional regulator QacR compare
MIT1002_03487 -3.2 -2.2 Na(+)-translocating NADH-quinone reductase subunit B compare


Specific Phenotypes

None in this experiment

For Alteromonas macleodii MIT1002 in mixed community experiments

For mixed community Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 across organisms