Experiment set1S512 for Paraburkholderia sabiae LMG 24235

D-Xylose carbon source

Group: carbon source
Media: AB_minimal medium + D-Xylose (20 mM)
Culturing: Psabiae_ML3b, tube, Aerobic, at 28 (C), shaken=180 rpm
By: Marta Torres on 12/5/24

Specific Phenotypes

For 18 genes in this experiment

For carbon source D-Xylose in Paraburkholderia sabiae LMG 24235

For carbon source D-Xylose across organisms

SEED Subsystems

Subsystem	#Specific
Xylose utilization	4
2-Ketogluconate Utilization	1
Cobalt-zinc-cadmium resistance	1
D-galactarate, D-glucarate and D-glycerate catabolism	1
D-ribose utilization	1
Homogentisate pathway of aromatic compound degradation	1
L-Arabinose utilization	1
Maltose and Maltodextrin Utilization	1
Peptidoglycan Biosynthesis	1
Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization	1
Trehalose Biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Pentose and glucuronate interconversions
• Starch and sucrose metabolism
• Peptidoglycan biosynthesis

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
xylitol degradation I	2	2	1
D-xylose degradation I	2	2	1
D-arabinitol degradation I	2	2	1
peptidoglycan maturation (meso-diaminopimelate containing)	12	4	2
superpathway of glucose and xylose degradation	17	17	1
peptidoglycan biosynthesis II (staphylococci)	17	12	1
peptidoglycan biosynthesis IV (Enterococcus faecium)	17	12	1
superpathway of pentose and pentitol degradation	42	23	1