Experiment set1S511 for Paraburkholderia sabiae LMG 24235

Compare to:

2-Deoxy-D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
QEN71_RS14065 -4.4 -3.0 hypothetical protein compare
QEN71_RS28005 -4.1 -6.2 glutamate synthase subunit beta compare
QEN71_RS00180 -3.7 -4.4 DUF4390 domain-containing protein compare
QEN71_RS17655 -3.2 -15.8 tryptophan synthase subunit alpha compare
QEN71_RS28715 -3.2 -7.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
QEN71_RS17640 -3.1 -12.3 phosphoribosylanthranilate isomerase compare
QEN71_RS27675 -3.1 -3.0 peptide chain release factor N(5)-glutamine methyltransferase compare
QEN71_RS27895 -3.1 -2.1 STAS domain-containing protein compare
QEN71_RS28035 -3.0 -11.2 3-dehydroquinate synthase compare
QEN71_RS20190 -2.9 -14.3 deoxyribose-phosphate aldolase compare
QEN71_RS24215 -2.9 -11.0 ketol-acid reductoisomerase compare
QEN71_RS20195 -2.9 -20.3 aldehyde dehydrogenase family protein conserved
QEN71_RS21975 -2.9 -8.5 endopeptidase La compare
QEN71_RS03005 -2.9 -5.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
QEN71_RS00290 -2.8 -16.4 homoserine O-acetyltransferase compare
QEN71_RS27560 -2.8 -13.5 anthranilate phosphoribosyltransferase compare
QEN71_RS25250 -2.8 -7.0 DUF934 domain-containing protein compare
QEN71_RS25255 -2.8 -12.5 nitrite/sulfite reductase compare
QEN71_RS05215 -2.8 -11.7 chorismate synthase compare
QEN71_RS21935 -2.7 -5.8 glucose-6-phosphate isomerase compare
QEN71_RS27835 -2.7 -11.1 imidazole glycerol phosphate synthase subunit HisF compare
QEN71_RS05720 -2.7 -23.5 oxygen sensor histidine kinase FixL compare
QEN71_RS24225 -2.7 -16.5 acetolactate synthase 3 catalytic subunit compare
QEN71_RS04710 -2.7 -17.6 trehalose-phosphatase compare
QEN71_RS06190 -2.7 -2.5 C40 family peptidase compare
QEN71_RS01985 -2.7 -16.9 threonine ammonia-lyase, biosynthetic compare
QEN71_RS17615 -2.6 -5.3 3-isopropylmalate dehydratase small subunit compare
QEN71_RS27865 -2.6 -14.6 histidinol dehydrogenase compare
QEN71_RS01990 -2.6 -19.3 FAD/FMN-binding oxidoreductase compare
QEN71_RS24955 -2.6 -17.7 phosphoenolpyruvate carboxylase compare
QEN71_RS20200 -2.6 -13.5 RbsD/FucU family protein conserved
QEN71_RS06310 -2.6 -1.8 lysophospholipid transporter LplT compare
QEN71_RS27870 -2.6 -14.0 ATP phosphoribosyltransferase compare
QEN71_RS26460 -2.6 -9.9 HAD family hydrolase compare
QEN71_RS27840 -2.6 -10.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
QEN71_RS09235 -2.6 -11.4 argininosuccinate synthase compare
QEN71_RS37555 -2.6 -3.4 response regulator compare
QEN71_RS02345 -2.6 -7.5 DUF2889 domain-containing protein compare
QEN71_RS28080 -2.6 -12.8 diaminopimelate decarboxylase compare
QEN71_RS26780 -2.6 -3.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
QEN71_RS39815 -2.6 -2.1 IS5/IS1182 family transposase compare
QEN71_RS27855 -2.6 -8.9 imidazoleglycerol-phosphate dehydratase HisB compare
QEN71_RS12935 -2.6 -3.4 glutamine synthetase family protein compare
QEN71_RS06025 -2.5 -13.7 ATP phosphoribosyltransferase regulatory subunit compare
QEN71_RS21425 -2.5 -10.9 HAMP domain-containing sensor histidine kinase compare
QEN71_RS22160 -2.5 -16.6 phosphoserine phosphatase SerB compare
QEN71_RS28010 -2.5 -19.6 glutamate synthase-related protein compare
QEN71_RS05780 -2.5 -2.0 Fe-S cluster assembly transcriptional regulator IscR compare
QEN71_RS26600 -2.5 -6.9 pyrroline-5-carboxylate reductase compare
QEN71_RS24165 -2.5 -11.8 triose-phosphate isomerase compare
QEN71_RS02425 -2.5 -2.9 phosphoglycerate kinase compare
QEN71_RS04070 -2.4 -11.5 prephenate dehydratase compare
QEN71_RS22405 -2.4 -16.0 homoserine dehydrogenase compare
QEN71_RS17680 -2.4 -16.9 amidophosphoribosyltransferase compare
QEN71_RS36660 -2.4 -2.2 DeoR/GlpR family DNA-binding transcription regulator compare
QEN71_RS02785 -2.4 -14.9 ornithine carbamoyltransferase compare
QEN71_RS21920 -2.4 -16.3 phosphoribosylformylglycinamidine synthase compare
QEN71_RS24090 -2.4 -16.4 NADH-quinone oxidoreductase subunit M compare
QEN71_RS26235 -2.4 -6.2 serine hydroxymethyltransferase compare
QEN71_RS22400 -2.4 -9.9 threonine synthase compare
QEN71_RS04065 -2.4 -12.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
QEN71_RS17605 -2.3 -7.7 3-isopropylmalate dehydratase large subunit compare
QEN71_RS12715 -2.3 -3.5 DUF305 domain-containing protein compare
QEN71_RS02350 -2.3 -17.9 ADP-forming succinate--CoA ligase subunit beta compare
QEN71_RS17645 -2.3 -9.6 tryptophan synthase subunit beta compare
QEN71_RS23000 -2.3 -9.6 anti-sigma factor compare
QEN71_RS20205 -2.3 -7.1 ribokinase conserved
QEN71_RS27565 -2.3 -8.2 indole-3-glycerol phosphate synthase TrpC compare
QEN71_RS27550 -2.3 -16.0 anthranilate synthase component I compare
QEN71_RS27825 -2.3 -7.1 phosphoribosyl-ATP diphosphatase compare
QEN71_RS24970 -2.3 -6.2 argininosuccinate lyase compare
QEN71_RS17620 -2.3 -6.4 3-isopropylmalate dehydrogenase compare
QEN71_RS20840 -2.2 -3.0 DUF1109 domain-containing protein compare
QEN71_RS02355 -2.2 -16.8 succinate--CoA ligase subunit alpha compare
QEN71_RS01445 -2.2 -6.0 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
QEN71_RS06040 -2.2 -13.8 potassium transporter Kup compare
QEN71_RS16000 -2.2 -1.6 LysR substrate-binding domain-containing protein compare
QEN71_RS29480 -2.2 -14.3 cation:proton antiporter compare
QEN71_RS27270 -2.2 -12.0 glutamate 5-kinase compare
QEN71_RS28040 -2.2 -8.1 shikimate kinase compare
QEN71_RS25720 -2.2 -5.5 SAM-dependent methyltransferase compare
QEN71_RS27005 -2.2 -4.6 type I glyceraldehyde-3-phosphate dehydrogenase compare
QEN71_RS04085 -2.1 -7.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
QEN71_RS26855 -2.1 -2.0 dihydroorotase compare
QEN71_RS35790 -2.1 -9.3 LacI family DNA-binding transcriptional regulator compare
QEN71_RS35645 -2.0 -7.7 TetR/AcrR family transcriptional regulator compare
QEN71_RS06150 -2.0 -1.9 aspartate kinase compare
QEN71_RS26445 -2.0 -11.9 phosphoribosylformylglycinamidine cyclo-ligase compare
QEN71_RS17850 -2.0 -5.5 homoserine kinase compare
QEN71_RS25630 -2.0 -4.5 NAD-dependent epimerase/dehydratase family protein compare
QEN71_RS27830 -2.0 -4.5 phosphoribosyl-AMP cyclohydrolase compare
QEN71_RS17600 -2.0 -12.7 citrate synthase compare
QEN71_RS41430 -1.9 -14.3 GntR family transcriptional regulator compare
QEN71_RS01465 -1.9 -15.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
QEN71_RS01820 -1.9 -11.5 AI-2E family transporter compare
QEN71_RS25235 -1.9 -10.0 sulfate adenylyltransferase subunit 1 compare
QEN71_RS25695 -1.9 -7.7 glycosyltransferase family 4 protein compare
QEN71_RS16170 -1.9 -2.0 periplasmic heavy metal sensor compare
QEN71_RS29475 -1.9 -12.5 YbdK family carboxylate-amine ligase compare
QEN71_RS01460 -1.9 -10.1 protein-export chaperone SecB compare
QEN71_RS25710 -1.9 -6.5 GNAT family N-acetyltransferase compare
QEN71_RS05750 -1.9 -11.6 IclR family transcriptional regulator compare
QEN71_RS04575 -1.9 -5.9 RNA polymerase sigma factor RpoE compare
QEN71_RS02450 -1.9 -3.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
QEN71_RS25240 -1.9 -6.2 sulfate adenylyltransferase subunit CysD compare
QEN71_RS27845 -1.8 -10.5 imidazole glycerol phosphate synthase subunit HisH compare
QEN71_RS25220 -1.8 -2.1 CbiX/SirB N-terminal domain-containing protein compare
QEN71_RS25700 -1.8 -4.7 DegT/DnrJ/EryC1/StrS family aminotransferase compare
QEN71_RS24005 -1.8 -1.8 putative toxin-antitoxin system toxin component, PIN family compare
QEN71_RS25690 -1.8 -4.4 glycosyltransferase family 4 protein compare
QEN71_RS26545 -1.8 -13.8 AsmA-like C-terminal region-containing protein compare
QEN71_RS25260 -1.8 -9.7 CysB family HTH-type transcriptional regulator compare
QEN71_RS24400 -1.8 -7.6 phosphoribosylamine--glycine ligase compare
QEN71_RS24945 -1.8 -5.5 fused uroporphyrinogen-III synthase HemD/membrane protein HemX compare
QEN71_RS23765 -1.8 -13.5 acetate--CoA ligase conserved
QEN71_RS25245 -1.8 -4.2 phosphoadenylyl-sulfate reductase compare
QEN71_RS38370 -1.8 -3.8 helix-turn-helix domain-containing protein compare
QEN71_RS25730 -1.7 -5.4 ABC transporter permease compare
QEN71_RS21065 -1.7 -1.6 sigma factor-like helix-turn-helix DNA-binding protein compare
QEN71_RS17880 -1.7 -12.0 TIGR00730 family Rossman fold protein compare
QEN71_RS34660 -1.7 -2.2 sterol desaturase family protein compare
QEN71_RS25705 -1.7 -3.0 FdtA/QdtA family cupin domain-containing protein compare
QEN71_RS22190 -1.7 -9.5 polyhydroxyalkanoate synthesis repressor PhaR compare
QEN71_RS27785 -1.7 -2.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
QEN71_RS15400 -1.7 -2.6 ABC transporter ATP-binding protein compare
QEN71_RS02440 -1.7 -4.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
QEN71_RS35095 -1.7 -1.7 HU family DNA-binding protein compare
QEN71_RS01545 -1.6 -4.4 heme o synthase compare
QEN71_RS34305 -1.6 -2.9 GntR family transcriptional regulator compare
QEN71_RS18635 -1.6 -1.4 hypothetical protein compare
QEN71_RS04080 -1.6 -6.4 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
QEN71_RS01420 -1.6 -5.4 PTS sugar transporter subunit IIB compare
QEN71_RS37480 -1.6 -2.3 (2Fe-2S)-binding protein compare
QEN71_RS11760 -1.6 -1.6 tautomerase family protein compare
QEN71_RS24220 -1.6 -3.8 acetolactate synthase small subunit compare
QEN71_RS35260 -1.5 -1.4 M15 family metallopeptidase compare
QEN71_RS24940 -1.5 -8.7 heme biosynthesis protein HemY compare
QEN71_RS30945 -1.5 -2.4 hypothetical protein compare
QEN71_RS36410 -1.5 -1.5 HutD family protein compare
QEN71_RS21530 -1.5 -1.2 aspartate aminotransferase family protein compare
QEN71_RS01430 -1.5 -3.3 phosphoenolpyruvate--protein phosphotransferase compare
QEN71_RS27915 -1.5 -2.9 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
QEN71_RS32800 -1.5 -1.5 dihydroneopterin aldolase compare
QEN71_RS03220 -1.5 -7.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
QEN71_RS21980 -1.5 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
QEN71_RS24890 -1.5 -4.1 P-II family nitrogen regulator compare
QEN71_RS33045 -1.5 -1.3 carbamate kinase compare
QEN71_RS39060 -1.4 -1.3 helix-turn-helix domain-containing protein compare
QEN71_RS30900 -1.4 -1.3 histidine kinase compare
QEN71_RS26195 -1.4 -3.0 phage holin family protein compare
QEN71_RS02105 -1.4 -10.7 nucleotidyltransferase family protein compare
QEN71_RS27920 -1.4 -4.0 ABC transporter ATP-binding protein compare
QEN71_RS25885 -1.4 -5.4 aldose epimerase family protein compare
QEN71_RS34705 -1.4 -1.1 hypothetical protein compare
QEN71_RS40320 -1.4 -7.3 GntR family transcriptional regulator compare
QEN71_RS24160 -1.4 -2.4 preprotein translocase subunit SecG compare
QEN71_RS27555 -1.4 -2.6 aminodeoxychorismate/anthranilate synthase component II compare
QEN71_RS08645 -1.3 -2.0 GTP cyclohydrolase II compare
QEN71_RS05480 -1.3 -10.9 phosphomethylpyrimidine synthase ThiC compare
QEN71_RS24545 -1.3 -10.5 polyhydroxyalkanoate depolymerase compare
QEN71_RS25420 -1.3 -4.5 oligosaccharide flippase family protein compare
QEN71_RS05080 -1.3 -5.9 MurR/RpiR family transcriptional regulator compare
QEN71_RS31585 -1.3 -2.2 hypothetical protein compare
QEN71_RS00185 -1.3 -5.6 PAS domain-containing sensor histidine kinase compare
QEN71_RS22330 -1.3 -2.4 glycosyltransferase family 39 protein compare
QEN71_RS32995 -1.3 -2.1 hypothetical protein compare
QEN71_RS25725 -1.3 -7.1 ABC transporter ATP-binding protein compare
QEN71_RS26950 -1.2 -2.0 LPS assembly lipoprotein LptE compare
QEN71_RS29450 -1.2 -4.1 SET domain-containing protein-lysine N-methyltransferase compare
QEN71_RS04890 -1.2 -2.3 hypothetical protein compare
QEN71_RS25715 -1.2 -3.8 acetyltransferase compare
QEN71_RS05205 -1.2 -6.0 CBS domain-containing protein compare
QEN71_RS31390 -1.2 -2.7 FadR/GntR family transcriptional regulator compare
QEN71_RS29100 -1.2 -1.0 flagellar protein FliT compare
QEN71_RS25675 -1.2 -8.3 hypothetical protein compare
QEN71_RS22510 -1.2 -3.0 anti-sigma factor compare
QEN71_RS08115 -1.2 -1.2 DUF2164 domain-containing protein compare
QEN71_RS06455 -1.2 -5.5 RIP metalloprotease RseP compare
QEN71_RS16440 -1.2 -2.0 presqualene diphosphate synthase HpnD compare
QEN71_RS24235 -1.2 -3.4 DUF3619 family protein compare
QEN71_RS44225 -1.2 -2.5 hypothetical protein compare
QEN71_RS00235 -1.2 -1.1 rod shape-determining protein MreD compare
QEN71_RS14015 -1.2 -4.3 substrate-binding domain-containing protein compare
QEN71_RS32200 -1.2 -6.0 MarR family transcriptional regulator compare
QEN71_RS43465 -1.2 -2.3 hypothetical protein compare
QEN71_RS14855 -1.2 -1.5 hypothetical protein compare
QEN71_RS09715 -1.2 -3.4 2-dehydropantoate 2-reductase compare
QEN71_RS19420 -1.2 -4.2 p-hydroxycinnamoyl CoA hydratase/lyase compare
QEN71_RS01440 -1.1 -3.3 S41 family peptidase compare
QEN71_RS28105 -1.1 -1.7 c-type cytochrome compare
QEN71_RS01200 -1.1 -7.1 DUF3567 domain-containing protein compare
QEN71_RS41030 -1.1 -2.2 XRE family transcriptional regulator compare
QEN71_RS41540 -1.1 -1.3 aminotransferase class V-fold PLP-dependent enzyme compare
QEN71_RS05740 -1.1 -3.3 phasin family protein compare
QEN71_RS24830 -1.1 -3.9 ABC transporter permease subunit compare
QEN71_RS33900 -1.1 -1.2 hypothetical protein compare
QEN71_RS22595 -1.1 -6.7 transcriptional repressor LexA compare
QEN71_RS18850 -1.1 -1.3 hemerythrin domain-containing protein compare
QEN71_RS27650 -1.1 -2.7 hypothetical protein compare
QEN71_RS41145 -1.1 -1.5 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source 2-Deoxy-D-Ribose in Paraburkholderia sabiae LMG 24235

For carbon source 2-Deoxy-D-Ribose across organisms