Experiment set1S510 for Alteromonas macleodii MIT1002

Compare to:

Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2

200 most detrimental genes:

  gene name fitness t score description  
MIT1002_03509 +3.2 26.5 Aerobic respiration control sensor protein ArcB compare
MIT1002_03515 +3.1 14.2 Protease production enhancer protein compare
MIT1002_03508 +2.6 8.7 putative solute:sodium symporter small subunit compare
MIT1002_03505 +2.5 13.8 DNA polymerase III PolC-type compare
MIT1002_03507 +2.1 10.1 Acetate transporter ActP compare
MIT1002_03230 +1.2 2.9 hypothetical protein compare
MIT1002_02506 +1.0 2.1 hypothetical protein compare
MIT1002_00834 +1.0 2.3 putative ABC transporter ATP-binding protein compare
MIT1002_01238 +1.0 4.6 fec operon regulator FecR compare
MIT1002_03502 +0.9 0.9 Immunogenic protein MPT70 precursor compare
MIT1002_02761 +0.9 1.2 Trigger factor compare
MIT1002_01789 +0.9 2.7 Ubiquinone biosynthesis protein COQ7 compare
MIT1002_01319 +0.9 1.2 Anti-anti-sigma-B factor compare
MIT1002_01602 +0.9 2.7 Fructosamine-3-kinase compare
MIT1002_02058 +0.8 1.8 Mercuric resistance protein MerC compare
MIT1002_03262 +0.7 1.8 Stress responsive A/B Barrel Domain protein compare
MIT1002_02244 +0.7 1.0 Putative addiction module component compare
MIT1002_03347 +0.7 1.2 Methyl-accepting chemotaxis protein 3 compare
MIT1002_03950 +0.7 1.6 High-potential iron-sulfur protein isozyme 2 compare
MIT1002_02372 +0.7 1.1 Biofilm growth-associated repressor compare
MIT1002_02391 +0.7 0.7 putative membrane protein compare
MIT1002_01124 +0.6 3.5 Fatty acid metabolism regulator protein compare
MIT1002_00334 +0.6 2.2 hypothetical protein compare
MIT1002_02471 +0.6 1.8 hypothetical protein compare
MIT1002_03056 +0.6 1.8 hypothetical protein compare
MIT1002_03294 +0.6 1.9 hypothetical protein compare
MIT1002_02626 +0.6 2.1 hypothetical protein compare
MIT1002_02060 +0.6 1.6 putative mercuric transport protein compare
MIT1002_02673 +0.6 4.1 L-lactate permease compare
MIT1002_03583 +0.6 2.0 hypothetical protein compare
MIT1002_03310 +0.6 1.6 L-rhamnose mutarotase compare
MIT1002_02112 +0.6 0.7 anaerobic benzoate catabolism transcriptional regulator compare
MIT1002_03788 +0.6 1.6 Host factor-I protein compare
MIT1002_00184 +0.6 1.6 hypothetical protein compare
MIT1002_01040 +0.6 1.5 Putative proximal rod protein compare
MIT1002_01901 +0.6 2.3 topology modulation protein compare
MIT1002_00836 +0.6 1.4 putative phospholipid ABC transporter-binding protein MlaD compare
MIT1002_01220 +0.6 3.4 Hpt domain protein compare
MIT1002_00674 +0.6 1.9 esterase YqiA compare
MIT1002_02588 +0.6 2.7 Long-chain-fatty-acid--CoA ligase compare
MIT1002_01929 +0.6 0.5 Trm112p-like protein compare
MIT1002_03529 +0.6 2.2 ankyrin repeat protein compare
MIT1002_01241 +0.6 2.3 putative peroxiredoxin compare
MIT1002_01283 +0.5 1.7 hypothetical protein compare
MIT1002_00240 +0.5 2.1 putative Fe(2+)-trafficking protein compare
MIT1002_02552 +0.5 2.3 Putative metal chaperone YciC compare
MIT1002_00171 +0.5 1.7 hypothetical protein compare
MIT1002_03117 +0.5 1.8 DnaA initiator-associating protein DiaA compare
MIT1002_03212 +0.5 3.2 putative type I restriction enzymeP M protein compare
MIT1002_01065 +0.5 0.9 Transposase compare
MIT1002_00283 +0.5 1.8 Mercuric resistance operon regulatory protein compare
MIT1002_00985 +0.5 0.9 hypothetical protein compare
MIT1002_02481 +0.5 2.7 hypothetical protein compare
MIT1002_02198 +0.5 1.7 putative oxidoreductase compare
MIT1002_02410 +0.5 0.7 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase compare
MIT1002_00938 +0.5 1.9 hypothetical protein compare
MIT1002_01134 +0.5 2.0 oxaloacetate decarboxylase subunit gamma compare
MIT1002_00891 +0.5 1.9 peroxiredoxin compare
MIT1002_03952 +0.5 2.7 hypothetical protein compare
MIT1002_01756 +0.5 0.9 Transcriptional regulator LsrR compare
MIT1002_02313 +0.5 2.2 SEC-C motif compare
MIT1002_03893 +0.5 3.2 Autoinducer 2 sensor kinase/phosphatase LuxQ compare
MIT1002_01207 +0.5 1.1 hypothetical protein compare
MIT1002_03926 +0.5 1.9 Cytochrome o ubiquinol oxidase protein CyoD compare
MIT1002_02877 +0.5 2.0 GIY-YIG nuclease superfamily protein compare
MIT1002_01081 +0.5 3.2 Nitrogen assimilation regulatory protein compare
MIT1002_04015 +0.5 1.3 hypothetical protein compare
MIT1002_01998 +0.5 2.4 hypothetical protein compare
MIT1002_03206 +0.5 2.7 hypothetical protein compare
MIT1002_02622 +0.5 1.4 hypothetical protein compare
MIT1002_00730 +0.5 1.6 phosphate binding protein compare
MIT1002_02103 +0.5 1.4 Transposase compare
MIT1002_02674 +0.5 2.6 D-malate degradation protein R compare
MIT1002_04223 +0.5 1.1 Transcriptional regulatory protein YycF compare
MIT1002_02562 +0.5 1.9 hypothetical protein compare
MIT1002_04005 +0.5 1.6 phi X174 lysis protein compare
MIT1002_01173 +0.5 1.9 hypothetical protein compare
MIT1002_01910 +0.5 1.2 hypothetical protein compare
MIT1002_01306 +0.5 1.7 Protein-disulfide isomerase compare
MIT1002_02505 +0.5 1.6 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MIT1002_03506 +0.5 2.4 Arabinose 5-phosphate isomerase KdsD compare
MIT1002_04090 +0.5 2.2 hypothetical protein compare
MIT1002_01578 +0.5 0.8 hypothetical protein compare
MIT1002_03953 +0.5 2.2 hypothetical protein compare
MIT1002_01226 +0.5 0.7 hypothetical protein compare
MIT1002_01195 +0.5 2.3 type IV pilus biogenesis/stability protein PilW compare
MIT1002_00537 +0.5 2.0 NYN domain protein compare
MIT1002_01597 +0.5 2.5 putative DNA-binding transcriptional regulator compare
MIT1002_00372 +0.5 1.4 16S ribosomal RNA compare
MIT1002_00799 +0.4 1.9 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MIT1002_04142 +0.4 2.0 hypothetical protein compare
MIT1002_03041 +0.4 1.8 hypothetical protein compare
MIT1002_03104 +0.4 2.7 Fatty acid hydroxylase superfamily protein compare
MIT1002_01023 +0.4 0.8 hypothetical protein compare
MIT1002_00588 +0.4 0.9 hypothetical protein compare
MIT1002_00381 +0.4 1.6 hypothetical protein compare
MIT1002_00915 +0.4 2.5 Small-conductance mechanosensitive channel compare
MIT1002_00005 +0.4 1.5 hypothetical protein compare
MIT1002_02432 +0.4 2.5 Mannitol 2-dehydrogenase compare
MIT1002_04153 +0.4 1.2 hypothetical protein compare
MIT1002_02483 +0.4 1.8 hypothetical protein compare
MIT1002_03078 +0.4 1.1 hypothetical protein compare
MIT1002_03575 +0.4 2.2 Transposase compare
MIT1002_02045 +0.4 2.1 Deoxyribodipyrimidine photo-lyase compare
MIT1002_02248 +0.4 1.0 hypothetical protein compare
MIT1002_03463 +0.4 1.4 FMN reductase (NADH) RutF compare
MIT1002_03016 +0.4 1.7 8-oxo-dGTP diphosphatase compare
MIT1002_02080 +0.4 1.5 Prephenate dehydratase compare
MIT1002_02438 +0.4 0.8 hypothetical protein compare
MIT1002_00073 +0.4 0.7 Cytochrome c5 compare
MIT1002_00846 +0.4 2.1 Major NAD(P)H-flavin oxidoreductase compare
MIT1002_04095 +0.4 1.6 hypothetical protein compare
MIT1002_03940 +0.4 1.3 Glycyl-glycine endopeptidase ALE-1 precursor compare
MIT1002_03522 +0.4 2.8 hypothetical protein compare
MIT1002_00488 +0.4 1.1 Thiosulfate sulfurtransferase GlpE compare
MIT1002_01918 +0.4 0.9 Cytidine deaminase compare
MIT1002_01714 +0.4 1.9 pyridoxamine 5'-phosphate oxidase, FMN-binding family compare
MIT1002_02420 +0.4 1.8 urea carboxylase-associated protein 1 compare
MIT1002_02452 +0.4 1.9 hypothetical protein compare
MIT1002_03231 +0.4 1.2 Transposase compare
MIT1002_00129 +0.4 1.8 OriC replication inhibitor compare
MIT1002_01413 +0.4 1.2 hypothetical protein compare
MIT1002_00402 +0.4 1.4 Bacterial inner membrane protein compare
MIT1002_00989 +0.4 2.1 SecY interacting protein Syd compare
MIT1002_02823 +0.4 2.0 rhombosortase compare
MIT1002_00255 +0.4 1.8 Putative copper export protein compare
MIT1002_01894 +0.4 1.3 hypothetical protein compare
MIT1002_04083 +0.4 1.2 hypothetical protein compare
MIT1002_00120 +0.4 1.9 hypothetical protein compare
MIT1002_00510 +0.4 2.3 Deoxyribonuclease TatD compare
MIT1002_03578 +0.4 1.5 Glycosyl transferase family 2 compare
MIT1002_00773 +0.4 1.8 DNA ligase compare
MIT1002_03654 +0.4 1.7 Protease production enhancer protein compare
MIT1002_00669 +0.4 0.9 hypothetical protein compare
MIT1002_01248 +0.4 1.5 Cold shock-like protein CspG compare
MIT1002_00887 +0.4 0.5 hypothetical protein compare
MIT1002_01725 +0.4 2.1 Ribosomal large subunit pseudouridine synthase C compare
MIT1002_02640 +0.4 2.0 Ferri-bacillibactin esterase BesA compare
MIT1002_01892 +0.4 1.4 hypothetical protein compare
MIT1002_00585 +0.4 2.0 UvsW helicase compare
MIT1002_00198 +0.4 3.1 Glycerol kinase compare
MIT1002_01911 +0.4 1.7 hypothetical protein compare
MIT1002_02901 +0.4 1.2 hypothetical protein compare
MIT1002_03026 +0.4 0.7 Cell division protein FtsW compare
MIT1002_02613 +0.4 1.1 hypothetical protein compare
MIT1002_03915 +0.4 1.9 transaldolase/EF-hand domain-containing protein compare
MIT1002_03861 +0.4 2.0 GTP cyclohydrolase folE2 compare
MIT1002_00394 +0.4 1.3 Glycogen synthase compare
MIT1002_02304 +0.4 0.9 hypothetical protein compare
MIT1002_04162 +0.4 0.7 hypothetical protein compare
MIT1002_04182 +0.4 1.4 hypothetical protein compare
MIT1002_01483 +0.4 1.6 hypothetical protein compare
MIT1002_04094 +0.4 1.5 hypothetical protein compare
MIT1002_00625 +0.4 2.7 RNA polymerase sigma factor RpoS compare
MIT1002_00621 +0.4 1.1 Superoxide dismutase [Ni] precursor compare
MIT1002_00679 +0.4 0.9 hypothetical protein compare
MIT1002_00256 +0.4 1.3 hypothetical protein compare
MIT1002_02625 +0.4 1.3 hypothetical protein compare
MIT1002_00324 +0.4 2.0 Putative copper export protein compare
MIT1002_03045 +0.4 1.1 hypothetical protein compare
MIT1002_02968 +0.4 2.3 Ferri-bacillibactin esterase BesA compare
MIT1002_02559 +0.4 1.1 YfcL protein compare
MIT1002_02338 +0.4 0.7 Toxin RelE2 compare
MIT1002_03076 +0.4 1.2 polyadenylate binding protein, human types 1, 2, 3, 4 family compare
MIT1002_01994 +0.4 1.2 Ribosomal S4P (gammaproteobacterial) compare
MIT1002_00009 +0.4 1.5 hypothetical protein compare
MIT1002_01334 +0.4 1.6 Acyl-CoA thioester hydrolase YbgC compare
MIT1002_03894 +0.4 2.3 ABC-type uncharacterized transport system, periplasmic component compare
MIT1002_03526 +0.4 1.7 Nitrogen regulation protein C compare
MIT1002_00501 +0.4 1.1 hypothetical protein compare
MIT1002_04146 +0.4 1.5 Putative transposon Tn552 DNA-invertase bin3 compare
MIT1002_00411 +0.4 0.8 hypothetical protein compare
MIT1002_01559 +0.4 1.8 Cyclic di-GMP phosphodiesterase YfgF compare
MIT1002_02689 +0.4 1.2 Chemotaxis protein MotB compare
MIT1002_02603 +0.4 2.0 Endonuclease/Exonuclease/phosphatase family protein compare
MIT1002_04228 +0.4 2.6 Excalibur calcium-binding domain protein compare
MIT1002_01444 +0.4 1.4 DNA protection during starvation protein compare
MIT1002_03782 +0.4 1.1 hypothetical protein compare
MIT1002_02594 +0.4 0.7 hypothetical protein compare
MIT1002_03428 +0.4 1.3 hypothetical protein compare
MIT1002_03277 +0.4 1.8 putative transporter YfdV compare
MIT1002_02451 +0.4 1.9 hypothetical protein compare
MIT1002_00856 +0.4 2.8 Autoinducer 2 sensor kinase/phosphatase LuxQ compare
MIT1002_00959 +0.4 2.6 Flagellar hook-length control protein FliK compare
MIT1002_00870 +0.4 2.2 Prolyl tripeptidyl peptidase precursor compare
MIT1002_00608 +0.3 1.7 heat shock protein HtpX compare
MIT1002_00123 +0.3 1.4 hypothetical protein compare
MIT1002_04163 +0.3 1.2 hypothetical protein compare
MIT1002_02101 +0.3 1.0 2-hydroxymuconate tautomerase compare
MIT1002_01177 +0.3 1.5 hypothetical protein compare
MIT1002_03354 +0.3 1.1 Stage 0 sporulation protein A compare
MIT1002_03920 +0.3 1.6 putative RNA polymerase sigma factor FecI compare
MIT1002_01389 +0.3 1.7 KDP operon transcriptional regulatory protein KdpE compare
MIT1002_02975 +0.3 1.6 putative phosphohydrolase (DHH superfamily) compare
MIT1002_02904 +0.3 0.5 hypothetical protein compare
MIT1002_04048 +0.3 1.6 Autotransporter assembly factor TamA compare
MIT1002_02078 +0.3 1.9 hypothetical protein compare
MIT1002_03191 +0.3 1.2 hypothetical protein compare
MIT1002_03608 +0.3 0.6 addiction module toxin, RelE/StbE family compare
MIT1002_01680 +0.3 2.4 3-phytase precursor compare


Specific Phenotypes

None in this experiment

For Alteromonas macleodii MIT1002 in mixed community experiments

For mixed community Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 across organisms